LOC118941173


Basic Information

Item Value
gene id LOC118941173
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47239132 ~ 47241438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952955.1
GCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGAGCACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA
>XM_036952954.1
AGGTTCAGGCAATAAATACACACCAAGCTGGTACGTCAACTAAGCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGGATTATGTTCCTTTGCTCATTGTTTGCAGAGCACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA

Function

NR:

description
nuclear pore complex protein Nup214-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952955.1 False 1872 mRNA 0.52 4 47239132 47241395
XM_036952954.1 True 1944 mRNA 0.51 4 47239132 47241438

Neighbor

gene id symbol gene type direction distance location
LOC118940995 NA coding downstream 10389 47224996 ~ 47228743 (-)
LOC110496387 LOC106588616 coding downstream 76305 47157965 ~ 47162827 (-)
LOC110496386 LOC106588618 coding downstream 85355 47148292 ~ 47153777 (-)
trappc9 trappc9 coding downstream 98117 46857461 ~ 47141015 (-)
LOC110496384 LOC106588605 coding downstream 416284 46779095 ~ 46822848 (-)
LOC118941174 NA coding upstream 7222 47248660 ~ 47250967 (-)
LOC118941176 NA coding upstream 16712 47258150 ~ 47292208 (-)
LOC110496393 LOC106588612 coding upstream 85511 47326949 ~ 47328359 (-)
LOC110496398 LOC106588638 coding upstream 395083 47636521 ~ 47647411 (-)
LOC110496399 NA coding upstream 565641 47807079 ~ 47808361 (-)
G1555331 NA non-coding downstream 18176 47220732 ~ 47220956 (-)
G1555314 NA non-coding downstream 43626 47190003 ~ 47195506 (-)
G1555306 NA non-coding downstream 64620 47174235 ~ 47174512 (-)
G1555305 NA non-coding downstream 65411 47173512 ~ 47173721 (-)
G1555301 NA non-coding downstream 73135 47165782 ~ 47165997 (-)
G1555454 NA non-coding upstream 57843 47299281 ~ 47299510 (-)
G1555456 NA non-coding upstream 59744 47301182 ~ 47301528 (-)
G1555458 NA non-coding upstream 62405 47303843 ~ 47304298 (-)
G1555467 NA non-coding upstream 79708 47321146 ~ 47326023 (-)
G1555469 LOC106588611 non-coding upstream 91150 47332588 ~ 47410478 (-)
G1555168 NA other downstream 326217 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1131030 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1436084 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1571392 45667361 ~ 45667740 (-)
G1552875 LOC106588536 other downstream 2165792 45065134 ~ 45073340 (-)
G1555543 NA other upstream 302122 47543208 ~ 47546614 (-)
LOC110496837 LOC106588626 other upstream 663401 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 other upstream 741445 47982726 ~ 47986560 (-)
G1556577 NA other upstream 1115175 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2726458 49967896 ~ 49968608 (-)

Expression


Co-expression Network