LOC118941176


Basic Information

Item Value
gene id LOC118941176
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47258150 ~ 47292208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952963.1
ACTAAGCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGAACACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGAAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA
>XM_036952962.1
ACCAAGCTGGTACGTCAACTAAGCATGGCAGTAAGGCACTGAGCTACTAATTGCGGAGTTTTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGGATTGTGTTCCTTTGCTCATTGTTTGCAGAACACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGAAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGCTACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGCGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGCTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGCTGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA
>XM_036952961.1
GTTCAGGCAATAAATACACACCAAGCTGGTACGTCAACTAAGCATGGCAGTAAGGCACTGAGCTACTAattgcTTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGGATTGTGTTCCTTTGCTCATTGTTTGCAGAACACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGATTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGTGAAGCTACTTACCGCGGGACTGGATACAACACACTCGGAGGCTTTGCTCCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGATCTATCCCGAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGCTCTATAGCCAGTGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGAGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGTGAATTCAAGTTCTCCAACTCCAGACAACCCAACCAAGGCCTTGTCCAGACTCTGAGTAGAGGAGCCCCCAGCCTCTATGGTCAAACTGCCACCCACACCACCTCCCTCACCCACTATGTCCAGGACTTGAAGCAAGGGAGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCAAGGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTGAAGTTCCCTCAAGTGGTTCTTCACAAACTTCATTTAGACCAGGTCCGCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCAACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCGCTGGCCAGAGAATAGATGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAACACCAAGCCAAAGCCTGTTTACCTCTAACCAAGGTAGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCAAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA

Function

NR:

description
nuclear pore complex protein Nup214-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952963.1 False 1877 mRNA 0.52 4 47258150 47260418
XM_036952962.1 False 1923 mRNA 0.51 4 47258150 47260435
XM_036952961.1 True 1986 mRNA 0.51 6 47258150 47292208

Neighbor

gene id symbol gene type direction distance location
LOC118941174 NA coding downstream 7183 47248660 ~ 47250967 (-)
LOC118941173 NA coding downstream 16712 47239132 ~ 47241438 (-)
LOC118940995 NA coding downstream 29407 47224996 ~ 47228743 (-)
LOC110496387 LOC106588616 coding downstream 95323 47157965 ~ 47162827 (-)
LOC110496386 LOC106588618 coding downstream 104373 47148292 ~ 47153777 (-)
LOC110496393 LOC106588612 coding upstream 34741 47326949 ~ 47328359 (-)
LOC110496398 LOC106588638 coding upstream 344313 47636521 ~ 47647411 (-)
LOC110496399 NA coding upstream 514871 47807079 ~ 47808361 (-)
LOC110496837 LOC106588626 coding upstream 598372 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 coding upstream 690518 47982726 ~ 47986560 (-)
G1555331 NA non-coding downstream 37194 47220732 ~ 47220956 (-)
G1555314 NA non-coding downstream 62644 47190003 ~ 47195506 (-)
G1555306 NA non-coding downstream 83638 47174235 ~ 47174512 (-)
G1555305 NA non-coding downstream 84429 47173512 ~ 47173721 (-)
G1555301 NA non-coding downstream 92153 47165782 ~ 47165997 (-)
G1555454 NA non-coding upstream 7073 47299281 ~ 47299510 (-)
G1555456 NA non-coding upstream 8974 47301182 ~ 47301528 (-)
G1555458 NA non-coding upstream 11635 47303843 ~ 47304298 (-)
G1555467 NA non-coding upstream 28938 47321146 ~ 47326023 (-)
G1555469 LOC106588611 non-coding upstream 40380 47332588 ~ 47410478 (-)
G1555168 NA other downstream 345235 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1150048 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1455102 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1590410 45667361 ~ 45667740 (-)
G1552875 LOC106588536 other downstream 2184810 45065134 ~ 45073340 (-)
G1555543 NA other upstream 251352 47543208 ~ 47546614 (-)
G1556577 NA other upstream 1064405 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2675688 49967896 ~ 49968608 (-)

Expression


Co-expression Network