LOC118941175


Basic Information

Item Value
gene id LOC118941175
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47270121 ~ 47272480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952958.1
GATGGCAACTGCAGGTTCAGGCAATAAATACACACCAAGCTGGTACGTCAACTAAGCATGGCAGTAAGGCACTGAGCTACAAATTGCGGAGTATTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGGATTGTGTTCCTTTGCTCATTGTTTGCAGAGCACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGATACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGCTCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGCGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGAGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTGCCACCCACACCACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCCATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTAAAGTTCCCTCAAGTGGTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGATGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGACCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCCAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACTAGCTCTGCCAGACGTCCCACCCAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA
>XM_036952959.1
TAAGCATGGCAGTAAGGCACTGAGCTACAAATTGCGGAGTATTGCGTTGTCTGGGCTGTTGGTGGTTTAAGGCTTTGATATGGCTTTTGGAATTAATTTGGGAGCACTCCAGTTTTACATGGGCTCCACGTGATGCCCAGAGAGTAAGAGGCTATGGGTTTTCTGGCTCTTCCAGAATGGAAGTTGAGCAGAGGCAAACAGGTGGCAGCTATCCCCAGGATCAATTCAGACCAGCCTCTCACACTTCTGGTTCGGTCCAGAGAGAAGCTACTTACCGCGGGACTGGATACAACACACTCGGAGGCTTTGCTTCAAGCTCCCTCCAGCCAGCCCCAAGGGGCTCTGGCTCTATCCCCAGCAGCTTTACCTCCGCCCAGACAAAGGGTAAGAGGACCCGTGCCAAGAATACTGACATTAGCCTCTCTGGTTCTATAGCCAGCGGATCCTCTGTCACCCACAACAAGCATCAAACCAAGGCCAGCAGAACCTATGGTCAAAGTGTCACTGACCCCAGTGCATTAAGGCCAGTTTCAAGTTGGGAGGTAAAGAGAATCCAGGCCAACACTCTTCGTACTGTACAGCCTCACTCCGGCAGCTCTGGACTAGTCCAGAATCCTGATGTTGTGTTTAATGTCCAGAGTAGAACTGCCTCTAACCTGAAACCATCTACTCCTAACTATGGCTCTACCCAGAGCGAATTTGTCCAGACTCTGAGTAGAGGAGCTCCCAGGCTCTATGGTCAAACTGCCACCCACACCACCTCCCTCACCCACTATgtccaggacctgaagcaagggaGCAGCTTCCCTTCCCTGGCTTTCAAGGGACCCATGGAGATCTCTGCCCGGTCAATTTCCACTCCTGACCGTAAAGTTCCCTCAAGTGGTTCTTCACAAACTTCATTTAGACCAGGTCCTCTGAGTTTTGGTTCTACTGAAGGTGGGAGTGCAACAAACAGCTACAAGCCTAGCTTCTCCCAAGATGTCATGCAATACCAGAGCAACTCTGCCAGTAGAAGTGTTTCAACTTCCAATCAATATGCCCAAACCTCTGGCCAGAGAATAGATGGAGCCTCTACCTCAAGTCGCGGCATGCCCACTTCTAGCCTGGCCTCTCGCTCCAGTCTTTTTCGCCCCAGCTCTACAGCTAGTGGAAACTCCTATGGCGCCTACAAGCCTGGCTCTGACCTTGGTGCAAGACCAAGCCCAAGCCTGTTTGCCTCTAACCAAGGTGGAAGGGGTTCAACATACAGCCAGAATCTCCTTGCCAAACCTGCCCAAGGGAAGTACGGACAAATGTCTGCTCAGTGGGGGAGCTACCAGCCCAGCTATGCTGCCAGTAGTGGGCCAGTCTCCAGCCTCTTCAGTTCTACCCAGGCTGCCAGTTCTTCAACATTCATCCAGAATGCTCCTGCCACAGCCCAGAAGCCAAGTGGCTCTAAACCTGTCCCCAGTCAACGCTATCAGCCCAGCTATTTGTTCAATGCAGTGAAGTCCAACACTAGCTCTGCCAGACGTCCCACCCAGAGCCTCTTGTCTAGCAGCTATGGCCCTACCCAGAGCAGGACCGGCAGTGCCAGCTCGATCAACCCTCGCCGCTTTGCCCTGACCATCATGCACAGCATCCCAGAATTGTACGGCGGATCTACAATCCACCGGCTCAAAGACCCTACTCGGTAGGAGTAGTGCCTCCCCTAGCCACTCAACCCAGCTCTTCAAGTGTCAGCAAGCCACAGCCAAACCACTATCTGCCAAGCAGAAAGGCCCTAGCACAACCTAAATTGAGTCCAGAGCTTTAGGGGAGTCCAGAACATGACGAAGTGGGATCTGTAGCCACCAGTTGAGGTGCTGTGACCTGGAAGTGTTGTCAGGACTTCTCTACTTCAATTGTTTTAAATAAAATGTACTAATACATAA

Function

NR:

description
nuclear pore complex protein Nup214-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952958.1 False 1997 mRNA 0.52 4 47270121 47272480
XM_036952959.1 True 1916 mRNA 0.52 4 47270173 47272480
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496389 LOC106588614 coding upstream 67215 47200301 ~ 47202906 (+)
LOC110496388 LOC106588615 coding upstream 77572 47177068 ~ 47192549 (+)
LOC110496835 LOC106588621 coding upstream 599051 46644587 ~ 46671070 (+)
khdrbs3 LOC106588624 coding upstream 825556 46301213 ~ 46444565 (+)
LOC110496942 LOC106588574 coding upstream 1022977 46230877 ~ 46247144 (+)
LOC110496390 NA coding downstream 7173 47279653 ~ 47282013 (+)
LOC110496391 LOC106588613 coding downstream 45347 47317827 ~ 47321272 (+)
LOC110496392 nudc coding downstream 57123 47329603 ~ 47339846 (+)
LOC110496394 LOC106588610 coding downstream 89478 47361958 ~ 47366493 (+)
LOC110496395 LOC106588635 coding downstream 133057 47405537 ~ 47517686 (+)
G1555341 NA non-coding upstream 8883 47251337 ~ 47261238 (+)
G1555054 NA non-coding upstream 95912 47173920 ~ 47174209 (+)
G1555049 NA non-coding upstream 103573 47166337 ~ 47166548 (+)
G1555044 NA non-coding upstream 112832 47156851 ~ 47157289 (+)
G1555001 NA non-coding upstream 201647 47068204 ~ 47068474 (+)
G1555366 NA non-coding downstream 29806 47302286 ~ 47302500 (+)
G1555367 NA non-coding downstream 37956 47310436 ~ 47310665 (+)
G1555369 NA non-coding downstream 56308 47328788 ~ 47329120 (+)
G1555420 NA non-coding downstream 210876 47483356 ~ 47485192 (+)
G1555436 NA non-coding downstream 265835 47538315 ~ 47538642 (+)
G1554912 NA other upstream 353161 46911533 ~ 46916960 (+)
G1554852 LOC106588605 other upstream 447637 46822126 ~ 46822484 (+)
G1554410 NA other upstream 630012 46577330 ~ 46640109 (+)
G1555433 NA other downstream 255265 47527745 ~ 47528039 (+)
G1556007 NA other downstream 627989 47900469 ~ 47901628 (+)
G1556006 LOC106588626 other downstream 630375 47902855 ~ 47903371 (+)
G1556003 LOC106588626 other downstream 631369 47903849 ~ 47905387 (+)

Expression

LOC118941175 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
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LOC118941175 Expression in each Bioproject

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LOC118941175 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network