LOC110496398 (LOC106588638)


Basic Information

Item Value
gene id LOC110496398
gene name LOC106588638
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47636521 ~ 47647411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572276.2
GAACAGCCAATCAGGACGTTTATGTTAATCCCATATTCTTAAAACCCGTCAATATGCCTCTAGCTGGATTACAGCTAGAAGTGTGTCACAGCGCAGGAGAATATTGGAGATGCCACACCGTTCAGTTTACGGGTCTATGATTTGCATGTGCAGAACTCTCTCGGATCTTCAGCCTAGATTGTTTAGAAACTTCTGTTCTAAGCGAATCTGAGAAGCGCAACAGGAGCGATTTTGTTTGATTTCTCGTCGATTTCAAGTTTCATTCCAACTTCAAAATAAACACTTATTTGGGGAATTGCTTTGGTACTGTCCATAATAGCCTACATCAACTAAACTACCAAAGAATTGACTACTTTTCCAAATCCCATCGTCATGTCCTCCGGGGATGAGTCGGAGCAGAGTCGGCGGTTCTGTGTGTTGTCTTGGGAGCAGGTGCAGAGGTTGGACTCTATTCTCGGAGAGAGCGTCCCTATTCACGGACGCGGAAACTTCCCGACGCTCTCTGTACAGCCTCGGCAGATAGTGCAGGTGGTTCGGGCACGTCTGCAGGAGCGTGGTGTGGTGGTCCGGGATGTGAAGCTGAACGGTTCAGCAGCCAGCTATGTGCTCCACCAGGACACCGGCCTGGGCTACAAGGACCTGGACCTTATCTTTGGCCTAAACCTGACTGATGACAAGACCTTTCGTGTGGTCAAAGATGTGGTCCTGGACAGCCTGGTGGACTTCCTACCTCCGGGGCTCAGCCGTGTCTCGCCTATGACCCTCAAAGAGGCCTACGTCCAGAAGCTGGTGAAGGTGTGCAACGACACAGACCGCTGGAGCCTGATCTCCCTCTCCAACAACACAGGGAAGAACGTGGAGCTGAAGTTTGTGGACTCTCTGCGGAGGCAGTTTGAGTTCAGCGTGGACTCGTTCCAGATCGGTCTGGACTCACTGCTGCTGTTCGACCGCTGCTCAGAGACGGCCATGTCCATGTCTGAGAGCTTCCACCCCACCGTGGTCGGAGAGAGCATGTACGGGGACTTCCAGGAGGCCCTGGGACACCTCCGCACCAGGACCATAGCCACGCACAGCCCTGAGGAGATCCGGGGCGGAGGACTGCTGAAGTACTGCCACCTGCTAGTGCGGGGGTTTAAACCGGACTCAGAGGCTCATATGAAGCTGCTGCAACGCTACATGTGCTCTCGTTTCTTCATCGACTTCCCGGACATTGGCGAGCAGCAGCGTAAGCTGGAAGCGTATCTCCAGAACCACTTCAACGGCATGGAGGACAAGCGCTATGACTGCCTGGTGACGCTGCGGCATGTGGTGGACGAGAGCACCGTGTGCCTGATGGGCCATGAGCGCCGCCAGACGCTGGCACTGATCTCGGCGCTGGCGCTACGGGCCATGGCAGAGCAGAACGCCATCCCGGCCCTGGCTAACATCACCTGTTACTACCAGCCGGCGCCTTACGTCAGGGACGTCAACTTCAGTAACTACTACATAGCGCGGGTCCAGTCGCCCATGAGTAACTCTTATAGTAACTCTTACCACAGAACATGGCTCCCTTGCAGCTGAGTGATGTGGATCTGTGTAAGAGGACTGTGTTGTATGTTGTGTTTTTTACGCTTCTAGTTTCTCTGTTTTagtctcaaatggtaccctattccctatatagtgcagtactttacaTGACCAGgaaactatatagggaatagggtgccatttgagacacacctCTGTCTCATGGTAACGTGAGCTGAGCAGTTTGATAGAGTGCTTTGCTCAGTCCACCTGTAGCAAAATGGCTTCTTGTGGGAGACTTGAGGACAACGTCCACTGAGGACCAAAAAAAAGGAAACATTTGTATTGAATTGTATCTTTTTGCCAAATCTTCAACTGCAACCATTCCCACTAAGTTATATCAATGAATACTGCTGTAAATCTGATTTGAGACGTTGTTATGATGTTTTGTTAGCTTTTTTTCTGAAGCGTTGGCTTCTTTGTTATAGGTATGGTGAAGACTGGTGGTCTATTTTGATGTGTGGAAAACGGTTGAAATGTGATGGAATAACTTTTCAGCATCCCAGTCGCGATGAGGGACTTTAAGTGTATTTGGATCCATAAAAGGAAATATAAGAAACCAGAAATCTGAATTCTGTTCTGACTGTGGTTTCAACTGATCTTTTCATTTGAAGATGTAAGGACCGAATAATAAAAATGTTGTGTAGCGTGAAGAAAACAAAACAGACTTTTGTGATTCTAAGTGCCTGAAATACCAACCGACATCTTAAAGTAGTTTACTTTGTAAATGAAATAACTGTTTTTGGATCTTTTTCACCCAGGTTACTGTACATTTCTCAATCCAGGGTCAGGGTACTTCATTTTCAAATAATAAAAAAAGATACAAAATGGAAA

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572276.2 True 2400 mRNA 0.48 2 47636521 47647411

Neighbor

gene id symbol gene type direction distance location
LOC110496393 LOC106588612 coding downstream 308162 47326949 ~ 47328359 (-)
LOC118941176 NA coding downstream 344313 47258150 ~ 47292208 (-)
LOC118941174 NA coding downstream 385554 47248660 ~ 47250967 (-)
LOC118941173 NA coding downstream 395083 47239132 ~ 47241438 (-)
LOC118940995 NA coding downstream 407778 47224996 ~ 47228743 (-)
LOC110496399 NA coding upstream 159668 47807079 ~ 47808361 (-)
LOC110496837 LOC106588626 coding upstream 243169 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 coding upstream 335315 47982726 ~ 47986560 (-)
LOC110496402 LOC106588641 coding upstream 354475 48001886 ~ 48022110 (-)
LOC110496403 LOC106570256 coding upstream 390447 48037858 ~ 48049720 (-)
G1555682 NA non-coding downstream 9473 47626820 ~ 47627048 (-)
G1555585 NA non-coding downstream 72262 47563995 ~ 47564259 (-)
G1555581 NA non-coding downstream 73671 47562594 ~ 47562850 (-)
G1555575 NA non-coding downstream 75698 47560607 ~ 47560823 (-)
G1555567 NA non-coding downstream 88412 47547894 ~ 47548109 (-)
G1555731 NA non-coding upstream 22630 47670041 ~ 47670560 (-)
G1555758 NA non-coding upstream 39561 47686972 ~ 47687283 (-)
G1555868 NA non-coding upstream 45527 47692938 ~ 47722383 (-)
G1555883 NA non-coding upstream 68970 47716381 ~ 47724569 (-)
G1555910 NA non-coding upstream 110090 47757501 ~ 47759406 (-)
G1555543 NA other downstream 89950 47543208 ~ 47546614 (-)
G1555168 NA other downstream 723606 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1528419 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1833473 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1968781 45667361 ~ 45667740 (-)
G1556577 NA other upstream 709202 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2320485 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 2375680 50023087 ~ 50034167 (-)

Expression


Co-expression Network