LOC110496401 (LOC106588640)


Basic Information

Item Value
gene id LOC110496401
gene name LOC106588640
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47982726 ~ 47986560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572278.2
TACAGCACCAAGCAcctgttgcctctctctctctcgctctctctagctgcATCACTCGGGACTGTAAAGCTGTAGCTActattactgtgtgtgtactctactgtcctgtggaCTCTTGGATATTATTGCAGACTACGTCTTCAGAGATACTCTACCAGAGAATAACTATGGCTCTATCACTGAACTCTCTCACCATCATAACACTCTGTGTGCTCCTGCAGGAGGGTTTTGGGCTCCCTGTATCCAGCCAGCCTGAGCTCCCTGCCCAGTCCCCGTCCCAGAACAGCCCACACCACACCAGGGTTAAACGATGCTCCTGCAGTAACTGGCTGGACAACGAATGCATCTACTTCTGTCACCTGGACATCATTTGGGTCAACACTCCCAATAAGGTCATCCCCTACGGTCTTGGCAGCCCCCTGTCCCGACGTCGCCGCTCCACCGGGCGATGTGAATGTGCCCACCCAGCCGACAGGACCTGCTCCGGATTCTGCCACAACAGCTCAGAGAACCCCAGATTCGTAGTGGTAAGCCCCTCAGACCAGACCCTGGAACAGGCTGTTAGCAGTCCAGACACAACCAGCAGCGACCTACTGACCTCTCTCAGAAACACGGTCCGatccaacatggctgccatagagcAGGCTGCTCCCTCTAGGAAGAAGAATGTGTCCAGAGCCAACAGACTGAACATCgggtagatgaggaggagggaggaagaggagctgAAAGAGGAGCTTTAAGAGCTCCAGAGCATCCGAACAAAGACCCCCTGGAGGAAACTTAGGGAGTCCTCCCCGGGGAAGACATAGAAGAGAGGTCCTAAGAGAGACCCTGAGAAGAGGGCAAATATGGAACACTGGCTGCCCACTGTTGTATAACACCTAGTAGACTGGATATGGACATTATCTGGATATGAGTCTTGGACTAATCTGGCAAAGAGTCCGATTCGGAAGACTAGGGAGGACCAAGTGTGTCCTCTGTGAACTGTGACAGTCTGGACTAGGATGGTTGCTGACTGTGTGCTGGTCATGGGTTGTCATCATGTCCCAAACATAAATACACTTTCTGTGTCTGAGCACCTGAAATGGGTGGATGCAAGACAAGGCATTCTGGAGTGATGTTAGTCTATGTTTACTTTACAGGCTTACTTCATTAGTGCCTTGAAAATATTGACCACTATTCTCATTTGGATTTGGATCCTTCACCTGTCACACGACATCTACTATATCATAGAATAAAAGATAAAAAAGGATTGTTCCTCTGTATCAGAGATGTATTGCCAGTTTATAGTGATTGCCATGCATGCATTTAAACTACTTGAAATACTTTTGGCACATGAAGGACATTACTTTAAGGGACAGGGaattactacacacacacaccttccggTAGCAGCAGATAAAAGCAGGTCTATTGTGATGGCGGAAGTATTTATTGCGCAGCCACTGTTAAATGTTTTGATTGTAGACAGAGCCAAGGCAGCAGACTTCAATGGGTCTGCTCCTTGCCAAATATGCAGTGACTGTTTTTCTGCTTTCAACAAATATCCATTAATGTCCATGTTATTACACATTGGGAAATTAGGACACTGCACTTCTGTTCTAATGCCTTCAAGGGAATGTGTTTTTATGTCCAGTAGACTTTAGATGGGTTAGGCTGACCACAAGGCATTGACTGGAAACGCTACCGTCTTCCACTGATGTTCAAGTCCAATGTCACAATGCTGTGTATTTATgatatgattatttatttatttgtttgtgttttgttGAGGAATTTGTGTATCAAAATGCTGGCCTGCGCTTTTGTTTGGCGTACTGTTGCTATCCCTAGAAGGACAATTCACCCACAATAGTCTATTTAGTAGTCAAATACGCTCTGGGAGGTTGAaagaaatgtttacttacgaaTTGTTCTATTCCAAGCTATTCATATGATCTATTATCAgcaattatttatttaacttatttTTTGGCATATACTTATATATTTGTGTTGTGTGAGCTTATCACTTTTAatgtgtgatgaaataaata
>TU1780583
TTAGTGCCTTGAAAATATTGACCACTATTCTCATTTGGATTTGGATCCTTCACCTGTCACACGACATCTACTATATCATAGAATAAAAGATAAAAAAGGATTGTTCCTCTGTATCAGAGATGTATTGCCAGTTTATAGTGATTGCCATGCATGCATTTAAACTACTTGAAATACTTTTGGCACATGAAGGACATTACTTTAAGGGACAGGGaattactacacacacacaccttccggTAGCAGCAGATAAAAGCAGGTCTATTGTGATGGCGGAAGTATTTATTGCGCAGCCACTGTTAAATGTTTTGATTGTAGACAGAGCCAAGGCAGCAGACTTCAATGGGTCTGCTCCTTGCCAAATATGCAGTGACTGTTTTTCTGCTTTCAACAAATATCCATTAATGTCCATGTTATTACACATTGGGAAATTAGGACACTGCACTTCTGTTCTAATGCCTTCAAGGGAATGTGTTTTTATGTCCAGTAGACTTTAGATGGGTTAGGCTGACCACAAGGCATTGACTGGAAACGCTACCGTCTTCCACTGATGTTCAAGTCCAATGTCACAATGCTGTGTATTTATgatatgattatttatttatttgtttgtgttttgttGAGGAATTTGTGTATCAAAATGCTGGCCTGCGCTTTTGTTTGGCGTACTGTTGCTATCCCTAGAAGGACAATTCACCCACAATAGTCTATTTAGTAGTCAAATACGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572278.2 False 2039 mRNA 0.45 4 47982726 47986560
TU1780583 True 727 TUCP 0.39 1 47982883 47983609

Neighbor

gene id symbol gene type direction distance location
LOC110496837 LOC106588626 coding downstream 55711 47890580 ~ 47945574 (-)
LOC110496399 NA coding downstream 174365 47807079 ~ 47808361 (-)
LOC110496398 LOC106588638 coding downstream 335315 47636521 ~ 47647411 (-)
LOC110496393 LOC106588612 coding downstream 654367 47326949 ~ 47328359 (-)
LOC118941176 NA coding downstream 690518 47258150 ~ 47292208 (-)
LOC110496402 LOC106588641 coding upstream 15326 48001886 ~ 48022110 (-)
LOC110496403 LOC106570256 coding upstream 51298 48037858 ~ 48049720 (-)
LOC118941177 LOC106588644 coding upstream 70462 48057022 ~ 48062162 (-)
LOC110496838 LOC106570261 coding upstream 405355 48391915 ~ 48661347 (-)
LOC110496839 LOC106588648 coding upstream 742665 48729225 ~ 48730477 (-)
G1556287 NA non-coding downstream 35492 47947033 ~ 47947234 (-)
G1556286 NA non-coding downstream 35959 47946528 ~ 47946767 (-)
G1556283 NA non-coding downstream 79010 47903449 ~ 47903716 (-)
G1556277 NA non-coding downstream 98288 47884074 ~ 47884438 (-)
G1556276 NA non-coding downstream 99553 47882878 ~ 47883173 (-)
G1556310 NA non-coding upstream 3442 47990002 ~ 47990207 (-)
G1556311 NA non-coding upstream 4393 47990953 ~ 47991203 (-)
G1556318 NA non-coding upstream 16618 48003178 ~ 48003497 (-)
G1556319 NA non-coding upstream 18109 48004669 ~ 48004899 (-)
G1556323 NA non-coding upstream 21340 48007900 ~ 48008100 (-)
G1555543 NA other downstream 436155 47543208 ~ 47546614 (-)
G1555168 NA other downstream 1069811 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1874624 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 2179678 45788099 ~ 45803048 (-)
G1556577 NA other upstream 370053 48356613 ~ 48356847 (-)
G1558535 NA other upstream 1981336 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 2036531 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 2369709 50256021 ~ 50359132 (-)
G1558916 NA other upstream 2450437 50436997 ~ 50437459 (-)

Expression


Co-expression Network