XLOC_003430


Basic Information

Item Value
gene id XLOC_003430
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23594349 ~ 23597671 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008603
gtttttttCCAGTTTCTCTGTGCATTTATTAagtgcaaataaacattaaaaacatgatCTGAAATTAGAAGGAACAGTCTAGAAAGGAATACAATGGGATAAAGCCCATTTACAATCCATACATCACATCAAATTCATTTTCTCAGCATTTACAGTATGCCAACCCTACTGATCTTACTCGCATTCTctttagttattaaaataagcATCACAGATGTTATAAAAGTTCTATACCTTTAAATCCAAACTCTTCACATTCACAACAAAAAAGATAGCTCAAAATTGAGCCGCAATAGGGAAACATCTTAAAAAGAAAATAACTTAAATTTCCATGAACAGTCTCAAGATAACAAAAATGGGGCTTTAAGGTTTCATGGACAGGAATTTTGCAGAACCTCCCCCCAAAAAATATGGCATATGGAAGttcttaaatagtttttttctgcCAATCCTTGTGCCACCAAATGGTTTTTGTCCCATAGTGTTACCAAGAACCGCTTTCTTTAATTCAAGGTCTGGCTCACATGGTGCACGGTACCCCACCAGAAAAGTTATCAAGTGATGACCCTTCATCACCAAATCTACACGTCTCCTGGGAAGGAGATTCAACAAACACAAACCCCCACTGGGGGAAACAGCCTTCTAAGCAGCTGGGCATCTCCAACTCCCTACCCATAAGCaaagacagacacaaacacatgcacagtgAAAGACAACGGTGAAATCCTTCACTTCCGCTGGGAATCAGCAAATGCTAGCGGTTTGTGTCGGAGCCTCTGGTGCCAAGCTGATGCCAGTCCACCCAACGATGGCCAGGGGTCAGGTCTTTCAAATGAATGATGGTTTCACCCAGAAGCGTGTTCTCCCAGAATGCACCCTCACTCAGTACCCGCAGGTGAACGGTTCTCTGCTGTAAATCGCCACGTGGTATTTTATCATACACCAACTGTGAAAAGAGAGAAAAAGTAGTCAGGaaaactggagaaaaaaaaacagctgagtATTT
>TCONS_00008602
gtttttttCCAGTTTCTCTGTGCATTTATTAagtgcaaataaacattaaaaacatgatCTGAAATTAGAAGGAACAGTCTAGAAAGGAATACAATGGGATAAAGCCCATTTACAATCCATACATCACATCAAATTCATTTTCTCAGCATTTACAGTATGCCAACCCTACTGATCTTACTCGCATTCTctttagttattaaaataagcATCACAGATGTTATAAAAGTTCTATACCTTTAAATCCAAACTCTTCACATTCACAACAAAAAAGATagcttttttaataaatgttcagtttttcatTATGGGTTGGCATGGAAATCATATACAATCATTTCCCTTAAGGGTTAACTTCAAACAGTTGTGCCATTTGGGAGGAAAATAACCATTCGTCATTTGAAAGAAACTTCAATCCTTTAGAAAAATGTCCTTTATATTGGAAATGGAGCTGGTTTTTCTGGTTAGAAAAAGCTACGGAACAGGGACTACTCTGACCTGGATAATCTTACCTAAGTTTGCTTAAGGCTACTGGATTGTTAGAGCACTTCGACAAACAGGGTTGCACTTTGGACTTGAAGATCCTTCATTTTAAGATATTAATTCATGATAATAATCAAGAATGAAAAGGTACTGTTGTGATACATTTCTAATAAAGCCTTTGAATTCCGTTTATTCCGAAATCCGAAttgaatttgttttaatttttacacaataaacaatatcaTTCCTCATTTAAATGGGCAAATTTTATGACCGTCTGATCAAATATGAATTTAAGAATATTTCCAATTAGTTCCTTTTTTCTTCAAGCCTATGAGGTGAGCTAAGTGCAAAGTAAAGCAAACTGCAATGCAAAATCTATAAGCATAAATTTCCAAGAGGGGGAGGGAGCTACTGTGGCATATTCAGCATTTCATTTACATGCAGTTTTACATAAAAAGGAAGAATGGAAATACTTACAAAACTACAGCCTAAAGCTTTAATTTCACTCTCCctttgaaaaacaaaatacaaataaattaaccaataaaaCTTGGAAAGATGTGAGGTCAATGTAATtgacaaacaaatgcaaaaaatgcaatatttatccCAGTAGCAAATTTCACAGCATGCAAATCAACTATTTTCAAATAGAAATGTCCTTGTAGGTTATGCTTACATATTAACAAGGCATAAAAGCACTGACCCTGAAATCAAGTTCCTTCAAAAGCCTTTTTTGCATACAAAGTAGTGTGCCATCATTTAAGAACGAAGGAGGTTTATGAAACTCCTCTGTTTTTTTCTCTGTTGTTCAATATACAGCACATGCAAATCATAATTTAGTTTTTGATGCACCCACCTATTTTTACATGatcaaaaaaaatctacattcaGTTCTGTTTGTGTCATTTCCACTGCTGAATCAAATGATCAAGTGTTCATCCCTTTTCAAGATCAAGTACATGTGAAATTACCCAACTTTACAGTACAAAAAGCGGCCCTCACTATTAATTTCTATGTAAATCTCTGCAAAATCTGATACAAAGAGACATAACTAATGTCACAAGACACAACATAGCTCAAAATTGAGCCGCAATAGGGAAACATCTTAAAAAGAAAATAACTTAAATTTCCATGAACAGTCTCAAGATAACAAAAATGGGGCTTTAAGGTTTCATGGACAGGAATTTTGCAGAACCTCCCCCCAAAAAATATGGCATATGGAAGttcttaaatagtttttttctgcCAATCCTTGTGCCACCAAATGGTTTTTGTCCCATAGTGTTACCAAGAACCGCTTTCTTTAATTCAAGGTCTGGCTCACATGGTGCACGGTACCCCACCAGAAAAGTTATCAAGTGATGACCCTTCATCACCAAATCTACACGTCTCCTGGGAAGGAGATTCAACAAACACAAACCCCCACTGGGGGAAACAGCCTTCTAAGCAGCTGGGCATCTCCAACTCCCTACCCATAAGCaaagacagacacaaacacatgcacagtgAAAGACAACGGTGAAATCCTTCACTTCCGCTGGGAATCAGCAAATGCTAGCGGTTTGTGTCGGAGCCTCTGGTGCCAAGCTGATGCCAGTCCACCCAACGATGGCCAGGGGTCAGGTCTTTCAAATGAATGATGGTTTCACCCAGAAGCGTGTTCTCCCAGAATGCACCCTCACTCAGTACCCGCAGGTGAACGGTTCTCTGCTGTAAATCGCCACGTGGTATTTTATCATACACCAACTGTGAAAAGAGAGAAAAAGTAGTCAGGaaaactggagaaaaaaaaacagctgagtATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008603 False 1006 lncRNA 0.41 3 23594349 23597671
TCONS_00008602 True 2292 lncRNA 0.36 2 23594349 23597671

Neighbor

gene id symbol gene type direction distance location
XLOC_003429 si:ch73-21d24.1 coding upstream 22756 23569869 ~ 23571593 (+)
XLOC_003428 BX571675.1 coding upstream 196964 23397270 ~ 23397385 (+)
XLOC_003427 csf1a coding upstream 297157 23265157 ~ 23297192 (+)
XLOC_003426 NA coding upstream 667161 22920469 ~ 22927188 (+)
XLOC_003425 CU861893.1 coding upstream 880218 22714015 ~ 22714131 (+)
XLOC_003431 nfasca coding downstream 106739 23704410 ~ 23884805 (+)
XLOC_003432 NA coding downstream 297858 23895529 ~ 23913499 (+)
XLOC_003433 cntn2 coding downstream 335345 23933016 ~ 23987682 (+)
XLOC_003434 chia.1 coding downstream 395627 23993298 ~ 24000171 (+)
XLOC_003435 chia.2 coding downstream 404322 24001993 ~ 24008739 (+)
XLOC_003369 CR854846.2 misc upstream 7471267 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 10882353 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 10900086 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 10908750 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 10914321 12679732 ~ 12680028 (+)
XLOC_003423 BX537143.1 non-coding upstream 994756 22596726 ~ 22599593 (+)
XLOC_003419 NA non-coding upstream 1690655 21902677 ~ 21903694 (+)
XLOC_003436 NA non-coding downstream 418164 24015835 ~ 24024576 (+)
XLOC_003440 NA non-coding downstream 463485 24061156 ~ 24083588 (+)
XLOC_003441 FP102969.1 non-coding downstream 518412 24116083 ~ 24151217 (+)
XLOC_003442 NA non-coding downstream 522620 24120291 ~ 24310645 (+)

Expression


Co-expression Network