LOC110496408 (rb39b)


Basic Information

Item Value
gene id LOC110496408
gene name rb39b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48829188 ~ 48834648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572290.2
TACAATAAGGCTGTAGAGTTGTCATAACATAAATGTGACGCTGTATTCTTTTTATGGTGATGTTCTGAAGCAATAGGCCCTATAATAAAGCCCGTGCATGGACCTGGGTAGGTAGCCTATCACATGACTGCAGCACTATCGCTCTTTGCTCGCTGGCGCTCCCATCCTTGTCTGACCAGAAGGCAGTAGTAGGCAGCAGCAGTCACTGGCTTTGTAAACACAACGTGCTGCGCAGCTTTGTTTCGGAACCACCACCATTGTGGGTCTCTCTCTAGCCATGTCATGGATATTTTGTGGCAATATCAGTTCAGGATAATTTTGCTCGGAGACTCGACGGTAGGGAAATCGTCTTTGCTGAAACGGTTTACAGATGGAATTTACAGCGATGTAGCGGATCCAACGGTCGGTGTGGATTTTTATGCCCGTTCGCTAGACATTGAGCAAGGGATTAAAATCAAGCTTCAACTGTGGGACACGGCTGGACAGGAACGATTCAGGTCCATTACTACTTCCTACTACCGTAACTCAGTGGGCGGGCTCCTCGTGTTCGACCTGACCAATCGCAAGACCTTCGACCACGTGAGGGAGTGGCACAAGGAAGTGAGCGAGCATATTCTGCCTCACCACATGGTCTACATTCTGATTGGCCACAAAAGCGACCTAAACAAGGACCGGAAGGTGACGCGGGACGAGGCTGAGCAGCTGGCGGCGGAGATGGGGATCCGCTATGTGGAGACATCGGCTAAGTGCAACAGCAACGTGGACCGGGCCTTCCAGCTGCTCAGCAGGGACATCTATGAGCTGATGAAGATGGGGGAGATCACCACGAGGGACGGATGGGATGGGGTGAAGAGCGGCCTCACCACCGGGGTCCTGTACCCGGGCGAAGAGGACATTGAGGTGGAGCCAAGGGAGAAGAGCTGCAACTGCTGAGAGACTGAGCCTCGatctctgacccctgacctcatccatggtcatgttcattaggcaccaaatggaagaaaacggactgaaaAAGAGAGGGACTACTTGgaattgtccaataagaaacgcacatttttattttccattgcGAAACGTTTTAGAAAACGTGTTCCAATATGTGCCCTAATAAACACGACTCATGTCTCCACTGTTGTTCCCCCTCTCTTATCTCCACAAGTATCTCCCATCGTCTCACAGTTTAGTCAGTTTCCCATCGAAATTAAGCCACAGTCTAAAGTGAGGCCCTTGTCCTATGACATCATCATCACGCGTCCACGTGTTATCTTATGCTTAGTGTAGATAGGATGCCAGTCCCCTCTGTATCAGTTCCTACAGAGGTCAGGATGGGGCTGTTTTCTGATAGGAGTGCACAATACCCATCCTGTAGTATACATCTTGATGTGACAAAAGCTTCTCTACAAACACAAAAGTCTGAGTCTTTAGGCCAAACACTAGTGTAAATCCTTGCAGTGGAAAAGCATCATACATGTACATGCTAAACGTACAAAAATTAACAGACACAGAGGCTGCATTTTCACAGGCagacaattctgatattttgcccaattattgttCATTTGGCCAATGAGAAAAGGCCTTTTGCCAATAagtgggcaaaagatcagaattgggctgcagCCAGAGACACCTGTATGAGAGCGATCAGGCCTTGAGTTATTCCAGTACATACCCTATTCATTCCTGGATGCCCTTTGCTTACTGGAGTTACTGGAGTCTCAAGCAAGCGAGGTCAGGACTTGCGGACAATGCATTATTGCGGTCTGGCATCACTCCCATTACGTTGTTGTTGGTTGGCTCCTGTTTggctctgcgtgtgtgtgtgtgtgtgtgtgtgtgcatatgtcgTTGCTCTGTATGCAGTCCCCTGAGACTGTACATCATGTTCGGTATGGTTAGCTCTGGTGTTAAAAGGTCACTGATAATAGGCAGTGAGAATAAACTGTACTCTATATGTGTCACCACGACCCCCCATCCCCTGCTAATCAATATGGTCCTGTAGACTACTAATCTATGTAAGCCAAATCATTTTCAtgttgcatcatgttgtggaCTTCCTACTTCAGAGCAGACGAGTAATGTTttcaacattttttaaaacatatcTACCATTTGTAGTACATTGCTGAAGCCACAAACAATTTGGTAGTCACTCTTTGTATTTGAATACTATATGGcatattaaaaacaaaacaaaccttcCAAGGTGGGTCTTCAAGGGGGAAAACCACACCAAGCCATTTTCCTTTAATTGGAGAGAGGTATTGGCTGACTTTAAGACTGCTCACATGGGGCTTTTGTAGCCATAATAACAATTTATTGGCATTATTACATTATCTGGTTGAGAACATGACATTTTGGCCCTAATGGCTTCCATGCTCCATCAGAATGGTTCCGATATCAAGACAGACAGAATTTTGCACTGCTCTGTTTATAGTCCCTTTCTGCTTGCAGAGAGGCACAGGAAGATAACTGTAGTTTCCTTTGTATATACTACCTCTATACAGCAAACCCCAGTGCAGATAACAGTTGCGCTGAGACTTGGCTGTAGATTCTGGTGTTACCATAGGAGTGTACAGCCATGGCTCAGGGCCTAGATAACAGCTCACTTTGCCTGGttcctcctacctccctccttccttcccctcaGCTCATCTTGTCCACCTCTCACCAGCACCACACCTCACCAGACACTTTACACACTGTAGATGACAGGAGAGACATTGTGCATTCAGCAACAGTGACTTTATAGGATATTGTGTTCTATGTTGGTTTTGTgtttcagtggtcattgggcaagGTCCAGGAGCATCCGGGCTGTATCATGGCCATGCGACTTGACTTGTTGAAAGGAATGTCTAACTAACTAACTTTTGTAAGCCTTTACATACATTCTGGCAAACAACTTACAAAGCCTCAGCAAACAATGTTTGTCTACATACAGTCCTTATGTTTTGCCTCTTGCTTTACAAAGTCTGATGCAAACATAGTTTAGTTGTTCCCACACTCATGGGTTTAACCAGGTTTATAGATATGCCGTGGTCAGTTTTTCAGCTCCAGTGAACATTCACAGACTTTGATTAAACCTCTGTTATCACAGGTCATAACCCATGTCTCATTTCTTTCAAAGTTAAATCAGTTGGCTAACTAATATCTATGACACTCTGTATTGATCCATGTTCTTGTTACGGTAAGGAAGGACACATCTACAAAGAGAAGGCAATACCGAGGCCTAGGGAGAAGAGACATACCCTTTAAATGAACAAAAACAGTCTTGCCTGGGAATGTATAGAAATGGAGAATTATATTTTTCAGACATGGTTTCAGAGGTATGATcatgtaggctgctgtctgtttGGTCATCGCAATTCAACTCCTTTTGAAAAGCAGCAAATGTTTCCATTCTAATCCACAAAGGAAGTTAAAGTCAAATCATGTTCCTTATAGTACGTACCTCTTTCATTTTTCAGCTTTGTGTGTAATTTATAACAGTTTTTTTTGTACAGCTGTATTTTTAATGcttataataatgataatatgtGCTGTAATACAGCTGCTTGTCAGTGAATGCAACATATTCCTGATCACTGAATTTGATAAGGATTCTTATTGTATTGTTACATGAGATATGAAGAAAACAGGAAATAGCAAGCTGTGGTGATGATGATGCCGATGACGGTCTATGAAAAAGGTGTATCTGGAGAAAGGCCCATGTCACTGAGATGGAGCACCAGCTATATTCAACAGCCTAATCAGGCTCAAGGACTTGAAAGAAGAGATTGAGCTTGGTTCTTGGATCTTGACACATTGCCAGTCGAACTAGAAAagtttagattttagattttaatAATTTATATTTTAGAAAGTGTTGATTATAAGTAATAAGTGGCAATTTTCATTGTGATGATAGTTATATCATAATACTGTAACTCGAATATCAATTGACAAAACAATCTATTTAGGTCCATGATAGTACAACGACATATGACAAATCACTAATGCATTTTTCTTGCAAATTCTGTTTTTTGGCAAGCTTAGAACTAGACAAAGCATCACAGCAGTGCAGTTGATACCTCTATTTTGCCTCTGACTAAGTCTGATCACAGTTCACAGCTTGATGGaataaatgttatttattttctatTCTAAATGTTCTGGGCAAGGTACTCTACTGTTAAAGGGTTATTCAGTCAATAAACAACATTATGTCCATGGTGCCATATTATGATTGACCAGCTCCATGCCAGGGTTGTGGCGTCCTCTTTTGGTAACAACAGAACTGCATACCTGACCCACTTAGCTAAATCACAGTGCAAATAAAATACTAAACTTCAACTAATAAACATAAAACTGTGTATGGTAA

Function

NR:

description
ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572290.2 True 4366 mRNA 0.43 2 48829188 48834648

Neighbor

gene id symbol gene type direction distance location
LOC118941242 NA coding downstream 1084 48827969 ~ 48828104 (-)
LOC110496407 LOC106588649 coding downstream 1106 48818937 ~ 48828082 (-)
LOC118941178 NA coding downstream 73319 48754530 ~ 48755869 (-)
LOC110496839 LOC106588648 coding downstream 98711 48729225 ~ 48730477 (-)
LOC110496838 LOC106570261 coding downstream 167841 48391915 ~ 48661347 (-)
LOC110496409 LOC106588651 coding upstream 2765 48837413 ~ 48851235 (-)
LOC110496413 LOC106588657 coding upstream 228083 49062731 ~ 49117216 (-)
LOC110496414 LOC106570277 coding upstream 289101 49123749 ~ 49131358 (-)
LOC110496416 LOC106588659 coding upstream 296280 49130928 ~ 49134380 (-)
LOC110496415 LOC106588660 coding upstream 302094 49134674 ~ 49146147 (-)
G1557202 NA non-coding downstream 94400 48734557 ~ 48734788 (-)
G1557188 NA non-coding downstream 113421 48715563 ~ 48715767 (-)
G1557184 NA non-coding downstream 123177 48705790 ~ 48706011 (-)
G1557178 NA non-coding downstream 130575 48698360 ~ 48698613 (-)
G1557175 NA non-coding downstream 132473 48696495 ~ 48696715 (-)
G1557360 NA non-coding upstream 195121 49029769 ~ 49030016 (-)
G1557376 NA non-coding upstream 205532 49040180 ~ 49040452 (-)
G1557879 NA non-coding upstream 250024 49084672 ~ 49086021 (-)
G1557993 NA non-coding upstream 428009 49262657 ~ 49319527 (-)
G1556577 NA other downstream 472341 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 845579 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 883614 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1282617 47543208 ~ 47546614 (-)
G1555168 NA other downstream 1916273 46911977 ~ 46912915 (-)
G1558535 NA other upstream 1133248 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 1188443 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1521621 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1602349 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1788443 50623091 ~ 50623983 (-)

Expression


Co-expression Network