Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110496411 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 48835667 ~ 48838643 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002469553.2 | False | 760 | mRNA | 0.43 | 9 | 48835667 | 48838642 |
| XR_002469550.2 | False | 754 | mRNA | 0.43 | 9 | 48835669 | 48838642 |
| XR_002469551.2 | False | 661 | mRNA | 0.43 | 8 | 48835697 | 48838642 |
| TU1781060 | True | 706 | lncRNA | 0.44 | 9 | 48835718 | 48838643 |
48,835,000
48,836,000
48,837,000
48,838,000
48,839,000
48,840,000
48,841,000
48,842,000
48,843,000
48,844,000
NC_048582.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496406 | LOC106588634 | coding | upstream | 32676 | 48801544 ~ 48802991 (+) |
| LOC110496405 | LOC106588646 | coding | upstream | 695022 | 48132310 ~ 48140645 (+) |
| LOC110496404 | LOC106588645 | coding | upstream | 726650 | 48073893 ~ 48109017 (+) |
| LOC110496400 | LOC106588639 | coding | upstream | 1008862 | 47800813 ~ 47826805 (+) |
| LOC110496397 | LOC106588637 | coding | upstream | 1290321 | 47533777 ~ 47545346 (+) |
| LOC118941179 | NA | coding | downstream | 12285 | 48850927 ~ 48864548 (+) |
| LOC110496412 | LOC106588653 | coding | downstream | 95576 | 48934218 ~ 48940502 (+) |
| LOC110496419 | LOC106588663 | coding | downstream | 336215 | 49174857 ~ 49184882 (+) |
| LOC110496423 | ub2e2 | coding | downstream | 378175 | 49216817 ~ 49268460 (+) |
| LOC118941180 | ube2e1 | coding | downstream | 441701 | 49280343 ~ 49293375 (+) |
| G1556888 | NA | non-coding | upstream | 9008 | 48826450 ~ 48826659 (+) |
| G1556861 | NA | non-coding | upstream | 10769 | 48798042 ~ 48824898 (+) |
| G1556832 | NA | non-coding | upstream | 11990 | 48736016 ~ 48823677 (+) |
| G1556850 | NA | non-coding | upstream | 49307 | 48760461 ~ 48786360 (+) |
| G1556831 | NA | non-coding | upstream | 101160 | 48734274 ~ 48734507 (+) |
| G1557340 | NA | non-coding | downstream | 166083 | 49004725 ~ 49005000 (+) |
| G1557356 | NA | non-coding | downstream | 188642 | 49027284 ~ 49027505 (+) |
| G1557399 | NA | non-coding | downstream | 245969 | 49084611 ~ 49085990 (+) |
| G1557419 | LOC106588667 | non-coding | downstream | 457690 | 49296332 ~ 49297344 (+) |
| G1557516 | NA | non-coding | downstream | 489261 | 49327903 ~ 49333635 (+) |
| G1556127 | NA | other | upstream | 723015 | 48074636 ~ 48112652 (+) |
| G1556003 | LOC106588626 | other | upstream | 930280 | 47903849 ~ 47905387 (+) |
| G1556006 | LOC106588626 | other | upstream | 932296 | 47902855 ~ 47903371 (+) |
| G1556007 | NA | other | upstream | 934039 | 47900469 ~ 47901628 (+) |
| G1555433 | NA | other | upstream | 1307628 | 47527745 ~ 47528039 (+) |
| G1557717 | NA | other | downstream | 706907 | 49545549 ~ 49545809 (+) |
| G1557814 | NA | other | downstream | 921786 | 49760428 ~ 49760966 (+) |
| G1558443 | NA | other | downstream | 1381112 | 50219754 ~ 50220127 (+) |
| G1559041 | thsd7a | other | downstream | 1795101 | 50633743 ~ 50635566 (+) |
| LOC110496482 | LOC106588780 | other | downstream | 3228200 | 52036488 ~ 52083470 (+) |
