LOC110496415 (LOC106588660)


Basic Information

Item Value
gene id LOC110496415
gene name LOC106588660
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49134674 ~ 49146147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572301.2
GCTGTAGAGCACCCTGGCTGTGTTGTTTTGGGAACGAGCAATCGGGCGCGCGCTGTTGACGGGGTACTTGAGCTGCAGGTTTGCGATCTCTCACCACGGACCTTGTCTTGTCTGCCAGAGAAAGTCAACAACAAATGAATCGTTGAGGGAAGAGGAAAACAGtgaggaaGAGGATGGTGAGCAGCCAGCCGAAGTATGAGCTGATCCAGGAGGTAGGGCGTGGCAGCTACGGCGTGGTGTACGAGGCGCTGGTGAAACGCACCGGGGCCCGGATGGCCGTGAAGAAGATCCGCTGCCACAGCCCAGAGAATGTAGAGCTGGCCCTCAGGGAATTCTGGGCCCTGAGCAGTATCCAGAGCCAGCACCCCAACGTCATTCACCTGGAGGAGTGTGTCCTGCAGAGAGATGACCTGGCTCAGAGGATGAGCCATGGGTCCAGTTCCCCACTGTACCTAGAGCTGGTGGAGACATCTCTGAAGGGAGAGATAACCTTTGACCCGTGCTGTGCCTACTATCTGTGGTTCGTCATGGACTTCTGTGACGGAGGAGATATGAACGCTTACTTGCTGTCCCGTAAACCCAGCCGCAAGACCAACACCAGCTTCATGCTGCAGTTAGGAAGTGCCCTGGCCTTCCTGCACCGAAACCAGATCATCCACCGAGATCTGAAGCCTGACAACATCCTCATCTCCCAGGGAAGGACCTTTGCGGGAACCCCCGAGCCCACACTGAAGGTGGCAGACTTCGGGCTGTCAAAGGTCTGCTCCACGTCGGGCCTCAACCCTGAGGAACCAGCCTCCGTCAACAAGTGTTTCCTCTCCACAGCGTGCGGCACGGACTTCTACATGGCTCCAGAGGTGTGGGAGGGCCACTACACGGCTAAAGCAGACATCTTTGCCCTGGGTATCATCATCTGGGCCATGGTGGAGCGGATCACGTTCGTTGATGTGGAGACCCAGAAGGAGCTCCTGGGAAGCTACGTGCAGCAGGGGGAGGAGATCGTGCCCCTCGGGGAGGCGCTCCTGGAGAACCCCAAGATGGAGCTGCTGATCCCGGCCAGGATGAAGAGCATGAACGCGGGCATGAAACAGCTGATCCGGGAGATGCTGTCGTTCAAccctcaggagagacctgacgcCTTTGAACTGGAGCTCCGACTGGTCAGGATTGCCTGCAGAGAGCTCGACTGGGACACGTGATAATTGATGTGGATAGGAGGAGAGCGGACCATGGGACTTGTAGTCACAACATCAAGCACTTGTATCTAGTCCTAATTCACCACTGTTAGCTCTGGTGGTCGAGGCCACACAATGGGAGTTTGTTTTTCTTGTAAGGGAACAATTCAAACGTCAGATTTTGGCTTTGCAGTTGGATATTGGTTTAGATGTAGGACTACTGGTAAACCTAGCTCAACGGGTTGATAGCCAGGCtgtaatttttttttgttttgaatgtTAACAGAGCAAGGCTGTCCATAAGCACATTCAGCTGTTTGTCTCTCAGAAGGAGAGGTGTTTGCTAGCCACCCCAGTGGTTTAGGCTAACCTGTTAACTTTAACTCTCTTCAGTTGTTTGCCTACAAATTTCACCCCAGTCTCGGTGCTAATAATCGTACTTCGGATGCAATTTATGAAACAGGGAGACCGCATCCCGTGTAGATATGATGCAATTAAATTCCAATTTAGACACGCCTCAGTGATCGTAAACTGTGCACGGCTGGTTTTACCAGTATTCTGTGACCAAACCCTGCTCCtccccatcaacacacacacacacacacacttcccactGCTCAGGTAAAATCGAAGATATACTGTTGGTTGGGATTTGTAGACAACCAGCTGTTTGAAGAGACATATCACACAGGACAGTATTCTGAGCTGGCCCTGAGCCAACTATGGGATCAGGCTAAGTCTTGGTATGCCAGCCCAGCCCAGACATAATCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCTCAGTCAGCCATTGTCATAATTGTCCTGGAATGTGTCATGATTGCCCCATAATGAAAATAATTTTGAGGAATGGAGTGTTTGGAATGTAATTAACTTGAGTCACCATAATTTAAAGTCCAGAGATAGCAAGCTGCTTATTCAAAACACATAAAGGAATGTGTTGTGGCCCCAAACAAACATTGATGTATTTAACTGAAGAGCCAATGTTCTGCTTGTATTATTAAAATATAGTGCTTTAATTTAGACTTGAATTCTCACAACTGAAGGCCAATGGAGTTCCAAATGAAACCTGTGTGAACGGAATGGTTAGGGGTATGACTTCACTGGCAATCACTTGATGAAAAAATGCActtttatttagttattttccTTTTCATAACTTACCATGCTATTATCTATCACCTTGAGAAACAGTGTTTACTTGGGGCCTGGGAAGATATATTGTCAAACAGCAAACAAGAagtctcttacacacacacaccggtataTTGTCAGCACACAGAACGTCTACTTATGCATGCAATGCCTCTCCCCttcagagaggagatggaggcagcACAGCACACAGTTGTCCCTGAGCCCAGAGGatctatttaaaaaatacaattttgtgTTTTAACCTGATCTCCTCTCACTGTCAGTTTTCACCTCGGTTTCCCCAGAACAGACACACACCTCTGGGTCCCGCTGGATTTAACGGTAATCCCTTTCTCCACGTTTCCTTCCGACAGACTCCTACTAAGCCTATTACGTTTGGTGTAGGTGGCAGAGGTAAAGGAAGGCACGCTCTGGGGACCCAGGCCTATTGCCTTGCAGGTCATAATTTGTGCGCTTCTAACAGTTGTGAAAATGAAAACGTTATCAATATCTGAAAAAATGTAGTTTTAGTGTGTCATTCAAACAGTGGCATAagttttaaaatatatttcatacGAGCAGACTGTCGCCAACATGAACCTGCATTATTGCCTTTTTTAAATGTCTTCCATTGACAAAATCCTCTTGTCTTTCATGATATTAACATACTTTATGCCTTATTTTAATATCTCCACACACTAGCACCTAGCACTACATTGTGTGATTGTTGTGGTGGCCAGGCACATTTTGTTCAGAGTTTTGGCTATTGGGTTTTTATCTCTGCTGTTTTACCCCTTCAATATTAGcactgattgcccctttaataaaATGGCTAAAGCACAA
>XM_021572302.2
GCTGCTGTAGAGCACCCTGGCTGTGTTGTTTTGGGAACGAGCAATCGGGCGCGCGCTGTTGACGGGGTACTTGAGCTGCAGGTTTGCGATCTCTCACCACGGACCTTGTCTTGTCTGCCAGAGAAAGTCAACAACAAATGAATCGTTGAGGGAAGAGGAAAACAGGGCAAAAAATCTGCAGCTAGCGGGCGGGggacccaggaccgagtttggggaaACCCTGACATAAGtgaggaaGAGGATGGTGAGCAGCCAGCCGAAGTATGAGCTGATCCAGGAGGTAGGGCGTGGCAGCTACGGCGTGGTGTACGAGGCGCTGGTGAAACGCACCGGGGCCCGGATGGCCGTGAAGAAGATCCGCTGCCACAGCCCAGAGAATGTAGAGCTGGCCCTCAGGGAATTCTGGGCCCTGAGCAGTATCCAGAGCCAGCACCCCAACGTCATTCACCTGGAGGAGTGTGTCCTGCAGAGAGATGACCTGGCTCAGAGGATGAGCCATGGGTCCAGTTCCCCACTGTACCTAGAGCTGGTGGAGACATCTCTGAAGGGAGAGATAACCTTTGACCCGTGCTGTGCCTACTATCTGTGGTTCGTCATGGACTTCTGTGACGGAGGAGATATGAACGCTTACTTGCTGTCCCGTAAACCCAGCCGCAAGACCAACACCAGCTTCATGCTGCAGTTAGGAAGTGCCCTGGCCTTCCTGCACCGAAACCAGATCATCCACCGAGATCTGAAGCCTGACAACATCCTCATCTCCCAGGGAAGGACCTTTGCGGGAACCCCCGAGCCCACACTGAAGGTGGCAGACTTCGGGCTGTCAAAGGTCTGCTCCACGTCGGGCCTCAACCCTGAGGAACCAGCCTCCGTCAACAAGTGTTTCCTCTCCACAGCGTGCGGCACGGACTTCTACATGGCTCCAGAGGTGTGGGAGGGCCACTACACGGCTAAAGCAGACATCTTTGCCCTGGGTATCATCATCTGGGCCATGGTGGAGCGGATCACGTTCGTTGATGTGGAGACCCAGAAGGAGCTCCTGGGAAGCTACGTGCAGCAGGGGGAGGAGATCGTGCCCCTCGGGGAGGCGCTCCTGGAGAACCCCAAGATGGAGCTGCTGATCCCGGCCAGGATGAAGAGCATGAACGCGGGCATGAAACAGCTGATCCGGGAGATGCTGTCGTTCAAccctcaggagagacctgacgcCTTTGAACTGGAGCTCCGACTGGTCAGGATTGCCTGCAGAGAGCTCGACTGGGACACGTGATAATTGATGTGGATAGGAGGAGAGCGGACCATGGGACTTGTAGTCACAACATCAAGCACTTGTATCTAGTCCTAATTCACCACTGTTAGCTCTGGTGGTCGAGGCCACACAATGGGAGTTTGTTTTTCTTGTAAGGGAACAATTCAAACGTCAGATTTTGGCTTTGCAGTTGGATATTGGTTTAGATGTAGGACTACTGGTAAACCTAGCTCAACGGGTTGATAGCCAGGCtgtaatttttttttgttttgaatgtTAACAGAGCAAGGCTGTCCATAAGCACATTCAGCTGTTTGTCTCTCAGAAGGAGAGGTGTTTGCTAGCCACCCCAGTGGTTTAGGCTAACCTGTTAACTTTAACTCTCTTCAGTTGTTTGCCTACAAATTTCACCCCAGTCTCGGTGCTAATAATCGTACTTCGGATGCAATTTATGAAACAGGGAGACCGCATCCCGTGTAGATATGATGCAATTAAATTCCAATTTAGACACGCCTCAGTGATCGTAAACTGTGCACGGCTGGTTTTACCAGTATTCTGTGACCAAACCCTGCTCCtccccatcaacacacacacacacacacacttcccactGCTCAGGTAAAATCGAAGATATACTGTTGGTTGGGATTTGTAGACAACCAGCTGTTTGAAGAGACATATCACACAGGACAGTATTCTGAGCTGGCCCTGAGCCAACTATGGGATCAGGCTAAGTCTTGGTATGCCAGCCCAGCCCAGACATAATCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCCCCAGCCCAGACATAACCTAGCATAACCTCAGTCAGCCATTGTCATAATTGTCCTGGAATGTGTCATGATTGCCCCATAATGAAAATAATTTTGAGGAATGGAGTGTTTGGAATGTAATTAACTTGAGTCACCATAATTTAAAGTCCAGAGATAGCAAGCTGCTTATTCAAAACACATAAAGGAATGTGTTGTGGCCCCAAACAAACATTGATGTATTTAACTGAAGAGCCAATGTTCTGCTTGTATTATTAAAATATAGTGCTTTAATTTAGACTTGAATTCTCACAACTGAAGGCCAATGGAGTTCCAAATGAAACCTGTGTGAACGGAATGGTTAGGGGTATGACTTCACTGGCAATCACTTGATGAAAAAATGCActtttatttagttattttccTTTTCATAACTTACCATGCTATTATCTATCACCTTGAGAAACAGTGTTTACTTGGGGCCTGGGAAGATATATTGTCAAACAGCAAACAAGAagtctcttacacacacacaccggtataTTGTCAGCACACAGAACGTCTACTTATGCATGCAATGCCTCTCCCCttcagagaggagatggaggcagcACAGCACACAGTTGTCCCTGAGCCCAGAGGatctatttaaaaaatacaattttgtgTTTTAACCTGATCTCCTCTCACTGTCAGTTTTCACCTCGGTTTCCCCAGAACAGACACACACCTCTGGGTCCCGCTGGATTTAACGGTAATCCCTTTCTCCACGTTTCCTTCCGACAGACTCCTACTAAGCCTATTACGTTTGGTGTAGGTGGCAGAGGTAAAGGAAGGCACGCTCTGGGGACCCAGGCCTATTGCCTTGCAGGTCATAATTTGTGCGCTTCTAACAGTTGTGAAAATGAAAACGTTATCAATATCTGAAAAAATGTAGTTTTAGTGTGTCATTCAAACAGTGGCATAagttttaaaatatatttcatacGAGCAGACTGTCGCCAACATGAACCTGCATTATTGCCTTTTTTAAATGTCTTCCATTGACAAAATCCTCTTGTCTTTCATGATATTAACATACTTTATGCCTTATTTTAATATCTCCACACACTAGCACCTAGCACTACATTGTGTGATTGTTGTGGTGGCCAGGCACATTTTGTTCAGAGTTTTGGCTATTGGGTTTTTATCTCTGCTGTTTTACCCCTTCAATATTAGcactgattgcccctttaataaaATGGCTAAAGCACAA
>TU1782352
CCCCAGCCCAGACATAACCTAGCATAACCTCAGTCAGCCATTGTCATAATTGTCCTGGAATGTGTCATGATTGCCCCATAATGAAAATAATTTTGAGGAATGGAGTGTTTGGAATGTAATTAACTTGAGTCACCATAATTTAAAGTCCAGAGATAGCAAGCTGCTTATTCAAAACACATAAAGGAATGTGTTGTGGCCCCAAACAAACATTGATGTATTTAACTGAAGAGCCAATGTTCTGCTTGTATTATTAAAATATAGTGCTTTAATTTAGACTTGAATTCTCACAACTGAAGGCCAATGGAGTTCCAAATGAAACCTGTGTGAACGGAATGGTTAGGGGTATGACTTCACTGGCAATCACTTGATGAAAAAATGCActtttatttagttattttccTTTTCATAACTTACCATGCTATTATCTATCACCTTGAGAAACAGTGTTTACTTGGGGCCTGGGAAGATATATTGTCAAACAGCAAACAAGAagtctcttacacacacacaccggtataTTGTCAGCACACAGAACGTCTACTTATGCATGCAATGCCTCTCCCCttcagagaggagatggaggcagcACAGCACACAGTTGTCCCTGAGCCCAGAGGatctatttaaaaaatacaattttgtgTTTTAACCTGATCTCCTCTCACTGTCAGTTTTCACCTCGGTTTCCCCAGAACAGACACACACCTCTGGGTCCCGCTGGATTTAACGGTAATCCCTTTCTCCACGTTTCCTTCCGACAGACTCCTACTAAGCCTATTACGTTTGGTGTAGGTGGCAGAGGTAAAGGAAGGCACGCTCTGGGGACCCAGGCCTATTGCCTTGCAGGTCATAATTTGTGCGCTTCTAACAGTTGTGAAAATGAAAACGTTATCAATATCTGAAAAAATGTAGTTTTAGTGTGTCATTCAAACAGTGGCATAagttttaaaatatatttcatacGAGCAGACTGTCGCCAACATGAACCTGCATTATTGCCTTTTTTAAATGTCTTCCATTGACAAAATCCTCTTGTCTTTCATGATATTAACATACTTTATGCCTTATTTTAATATCTCCACACACTAGCACCTAGCACTACATTGTGTGATTGTTGTGGTGGCCAGGCACATTTTGTTCAGAGTTTTGGCTATTGGGTTTTTATCTCTGCTGTTTTACCCCTTCAATATTAGcactgattgcccctttaataaaATGGCTAAAGCACAATCAGCAGTTGCTAtatttaacaaaaatataaacttaaccatttcaatgattttactgagataCAGTTCATAAAAAAAGAAAATCCAGTCAATTAAAATACATTGATTAGGCCCTAGtttatgaatttcacatgactgggcaggggtgcagccataggCTTGGGAGCCAGGCCgaaccaatcagaatgagtttttgcCCCACAAAAGGGcatcattacagacagaaatccttctcagtttcatcagctggtggctgtctcagatgatcccgcaggtgaagaagccagacgTGGAGGTTcttggctggcatggttacacgtggtctgcagttgtgaggtcggttggaggcggcttatggtagaaaaattaacattcaattctctggcaacagctctggtggcattcctgcagtcagcatgtcaattgcacactccctcaaaattgAGACAactgtggcactgtgttgtgacaactgcacattttagtggccttttattgtccccagcacaaggtgcatctgtgcacttaaatatttagtcttgcctattcaccctctgagtggcacacataaaccagtggaggctgctgaggggaggacggctcataatatcTGGAAAGGAGCGaacggaatggcatcaaacacatggaacccaagtgtttgatgtatttgatactattccactccagccatgaCCATGAtgctgtcctccccaattaaggtatgAACCTCCTGTGATAttctcaattgtcttaaatccttctttaacctgtctccccttcatctacactgattgaagtggatttaacaagtgacatcaataacagatcatagctttcacctggtcagtctgtcgtggaaagagcagatgttcctaatgttttgtacaccttGTGCATATGAGCTACTACAGAGGCTGAAGGAGGAGTTTATGGACATGTGACTGTGAATTATTACGAGCGCCTTGACATTGTTTGAGTTGTATGTTTGCTGTGATGGTTGATCCTTTTTCAACAGTTACTTCAGCTTCCCATATGTTCTGTCATTGATACAGAAGTGGTTTTAGAGTTGGATACTGTGTTGGTGTGCTAGTGGTGATAATTATGTCTTCATTGGCCCAACTTTGGTTGGTCattgatgtgtttgtgtgtgtattgattGTGTACACACACAACTGGGGTCACCTACTCAAAAACGTCTTTGCTGCTTCTGATGAACTTGATAAGGAGATAAAAATAGCTCGTTGCCTGAAGTATAATCCTACCAGACTCAGATGTGTCACCTTTGGTGAAatctgcatccaaaatggcaccctattgcccaTAAATGCATTACTTTGGACCAgaggccctggtccaaagtagtgatgTGATATATATATGGTGCCATTGGGAACACAAATCGTAAGTGCCCTATTCAGAACAGGACCCATTGCAACGACAAACCTCACCATTTGAAGATAAACACCAAGCATCATCAGTGTACATTATAACCAGGTGTATGAGGGGCTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108436206

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572301.2 False 3268 mRNA 0.48 3 49136742 49146144
XM_021572302.2 False 3336 mRNA 0.48 4 49136742 49146147
TU1782352 True 2738 lncRNA 0.41 3 49134674 49137971
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496416 LOC106588659 coding downstream 2362 49130928 ~ 49134380 (-)
LOC110496414 LOC106570277 coding downstream 5384 49123749 ~ 49131358 (-)
LOC110496413 LOC106588657 coding downstream 19526 49062731 ~ 49117216 (-)
LOC110496409 LOC106588651 coding downstream 285507 48837413 ~ 48851235 (-)
LOC110496408 rb39b coding downstream 302094 48829188 ~ 48834648 (-)
LOC110496840 LOC106588661 coding upstream 4138 49150285 ~ 49182882 (-)
LOC110496418 LOC106588662 coding upstream 40525 49186672 ~ 49200574 (-)
LOC110496422 LOC106588665 coding upstream 55079 49201226 ~ 49203888 (-)
LOC110496421 LOC106588664 coding upstream 57838 49203985 ~ 49209483 (-)
LOC110496424 LOC106588667 coding upstream 149425 49295572 ~ 49297343 (-)
G1557879 NA non-coding downstream 50721 49084672 ~ 49086021 (-)
G1557376 NA non-coding downstream 96290 49040180 ~ 49040452 (-)
G1557360 NA non-coding downstream 106726 49029769 ~ 49030016 (-)
G1557202 NA non-coding downstream 401954 48734557 ~ 48734788 (-)
G1557188 NA non-coding downstream 420975 48715563 ~ 48715767 (-)
G1557993 NA non-coding upstream 116510 49262657 ~ 49319527 (-)
G1558076 NA non-coding upstream 331205 49477352 ~ 49477569 (-)
G1558118 LOC106582599 non-coding upstream 398166 49544313 ~ 49544584 (-)
G1558134 NA non-coding upstream 434827 49580974 ~ 49581482 (-)
G1558139 NA non-coding upstream 440196 49586343 ~ 49586880 (-)
G1556577 NA other downstream 779895 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 1153133 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 1191168 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1590171 47543208 ~ 47546614 (-)
G1555168 NA other downstream 2223827 46911977 ~ 46912915 (-)
G1558535 NA other upstream 821749 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 876944 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1210122 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1290850 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1476944 50623091 ~ 50623983 (-)

Expression

LOC110496415(LOC106588660) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110496415(LOC106588660) Expression in each Bioproject

Bar chart with 21 bars.
LOC110496415(LOC106588660) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network