LOC110496422 (LOC106588665)


Basic Information

Item Value
gene id LOC110496422
gene name LOC106588665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49201226 ~ 49203888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572309.2
TGATTACACATTTCTGTATATCCAAGAACCCTCCCATTGTCAGGTGATGGACAGTCCCTTTAAAGGGAGTGTACTAGAGGGGAGTCTGCAGATATCTTCACACTTGCTCACCGATTCAGTGTTTGCCCGGTAAGGAAAATTCACCTTTTATTTACTAATTCATACATTTCTTAAAATGTTGATGCTTTCTTAGCTCAGCAGTTTTTTTAGAATTATACAAGACACTTGTGCTGTATTTGAGTGAGCTGTTAATGATTTAAATAGTGTTATTTCATGTAGCATGACTTGCTTGCTATGACATGCAAATTGACTTACAGTATCAGTTTGCCAATATGAGTACAGTTGAGGGAAGAAATGTCTGAATATTGCTAAAATAATGTTGGATTTGGTCTGTTTATCTATAATATACACCATCCAACAGTCATCATAACTGGTCATATATAAACAGGGATATGGGTATGATAGCGTTTAATTGTTTACCACTAATTCACATGACCACATTACCAGTCTCCAGGCTGCACCCATTaaaagtcattgagagaggagaTAATCATTTCCTTAGGTGATGCGTTGAGATGGAAGTTCTGGCTCCTGGTCTTGGCTAAGTGTATCCTGAGGGGATCATAAAGCTACCACGGTGTGTTCTACGAGTACTCCTGGACCCCAGGGTCAACACTAACTACATGGATTTATAACGTGTTTAAATTGATGGAATATTACTCTCATCAACATAACAATGCCCACGCCGTCACATGACTGAGAATCTGAAACCTTCATTAATTAACGCACATGTTTGTACGGGCTATGTTTGTACTGGGACTCAGGCTACACTTTTGCAGGTTAATTATCCACACATCTGCTGCTGGGGGAAGTAAGCTAAGGATGTTTTTGAAACAGGACTGCAGAGGAGTCTTTGGTCTTGCCGGTCCTCAAAGGAGATCTGTTGTATTTGTTCTTGTGCTTTTGAATCTAACCATTAAGAAAACTGTGGGAGACCAACTCCCAACTTCCACAAATGACCCCAAGATGACTGAAGCTCAAACCACCCAACCCACCACAACCATCAGCAAACTGTATCCTATATGCACAACCAGGTCAAAGACTGAAAACAGCCAAACCATTCACACCACCACTGTCCCTCCAGGAAGAGACTACTACAATACAGACCGCAACAAAGAAGTCTTCCCTACATCCCAGACTGGGGGAGAATACACCAGAGCTCAAGATTACATCACAAACATCTCTACAGTCAAGACTGAGAGAAATGACACAGAAGATGATATTAACGTCACCCATTCTTTCAAGAATGAGATGGTGAAGTATAGTGATGTCATACCAACATCTCAGTCCAATGGAAACCATACTCAAGATGGGGGCAAGGACTTTGATGACCAAGGCTCCATTGCCTCCGATATGACCCAAACTGAGAACTATAATATCGCCACAGAGCCTACCACTACAGCTACTGCAAGATCCACAATGGGAGGCATGACTGTAAATGCTGCTTCAACCAGAAAGAAGATGAGGTCTTGTAAAATATTTAGCTGTATCGGCATAACATGCTACAAACATGTGAAGGTCATGGAGGAGTTGTGTGAGGAGGGTATGGACTTCTGTGAGCTCAAGAAAGCCTCAAGCCAGGTCACCTGGAATACATATGTGGCGGTGTGGAGTGCTGGATGCGCCAGAGACTGCAGACAGAGCACTAAGTGTGGTCCCTTCAGCTCGTACCAATGCCACAATGAGTGTTGTGTGGCTgggtctgtctcctgtctcagacTGGATGGTTCTCTCAACATGCCTGTCAACTCTGCCTGCTGTGGCCTGGGGAGTCTCTCCCTCCTGGCTCTGAGTGTAACCTCTCTACTGGACAATCTACTCAACACTCGCTAATCTACTAACCTTCATGTGACATTAGACTCACTTTAGAATGCAGAGGGTTTAGTATGGATCGACTAAATGCAgatttcagttttgtcatatcCACTGCTTGGGCGTCATTAGTTCTTTCATGTTTTCTTCATCTGTGAATGCAAGCTCTCGTGAAAATAAAACTGTTTTCCAGCTTTATGTTGTTCTTAAATAACACATCCCAACCTCTAGTGGATCCAGTCATGGGT
>XM_036952991.1
TGATTACACATTTCTGTATATCCAAGAACCCTCCCATTGTCAGGTGATGGACAGTCCCTTTAAAGGGAGTGTACTAGAGGGGAGTCTGCAGATATCTTCACACTTGCTCACCGATTCAGTGTTTGCCCGGTAAGGAAAATTCACCTTTTATTTACTAATTCATACATTTCTTAAAATGTTGATGCTTTCTTAGCTCAGCAGTTTTTTTAGAATTATACAAGACACTTGTGCTGTATTTGAGTGAGCTGTTAATGATTTAAATAGTGTTATTTCATGTAGCATGACTTGCTTGCTATGACATGCAAATTGACTTACAGTATCAGTTTGCCAATATGAGTACAGTTGAGGGAAGAAATGTCTGAATATTGCTAAAATAATGTTGGATTTGGTCTGTTTATCTATAATATACACCATCCAACAGTCATCATAACTGGTCATATATAAACAGGGATATGGGTATGATAGCGTTTAATTGTTTACCACTAATTCACATGACCACATTACCAGTCTCCAGGCTGCACCCATTaaaagtcattgagagaggagaTAATCATTTCCTTAGGTGATGCGTTGAGATGGAAGTTCTGGCTCCTGGTCTTGGCTAAGTGTATCCTGAGGGGATCATAAAGCTACCACGGTGTGTTCTACGAGTACTCCTGGACCCCAGGGTCAACACTAACTACATGGATTTATAACGTGTTTAAATTGATGGAATATTACTCTCATCAACATAACAATGCCCACGCCGTCACATGACTGAGAATCTGAAACCTTCATTAATTAACGCACATGTTTGTACGGGCTATGTTTGTACTGGGACTCAGGCTACACTTTTGCAGGTTAATTATCCACACATCTGCTGCTGGGGGAAGTAAGCTAAGGATGTTTTTGAAACAGGACTGCAGAGGTATCCTCATCACCTTACCTAATCAATATCAGTAGTCCAGTAAATATCAGCTGGTTGTATACAACAAAAATGACAGAGCTGACCTTGATTAGCATTTTTATTTTACCATTTCAATGCAGGAGTCTTTGGTCTTGCCGGTCCTCAAAGGAGATCTGTTGTATTTGTTCTTGTGCTTTTGAATCTAACCATTAAGAAAACTGTGGGAGACCAACTCCCAACTTCCACAAATGACCCCAAGATGACTGAAGCTCAAACCACCCAACCCACCACAACCATCAGCAAACTGTATCCTATATGCACAACCAGGTCAAAGACTGAAAACAGCCAAACCATTCACACCACCACTGTCCCTCCAGGAAGAGACTACTACAATACAGACCGCAACAAAGAAGTCTTCCCTACATCCCAGACTGGGGGAGAATACACCAGAGCTCAAGATTACATCACAAACATCTCTACAGTCAAGACTGAGAGAAATGACACAGAAGATGATATTAACGTCACCCATTCTTTCAAGAATGAGATGGTGAAGTATAGTGATGTCATACCAACATCTCAGTCCAATGGAAACCATACTCAAGATGGGGGCAAGGACTTTGATGACCAAGGCTCCATTGCCTCCGATATGACCCAAACTGAGAACTATAATATCGCCACAGAGCCTACCACTACAGCTACTGCAAGATCCACAATGGGAGGCATGACTGTAAATGCTGCTTCAACCAGAAAGAAGATGAGGTCTTGTAAAATATTTAGCTGTATCGGCATAACATGCTACAAACATGTGAAGGTCATGGAGGAGTTGTGTGAGGAGGGTATGGACTTCTGTGAGCTCAAGAAAGCCTCAAGCCAGGTCACCTGGAATACATATGTGGCGGTGTGGAGTGCTGGATGCGCCAGAGACTGCAGACAGAGCACTAAGTGTGGTCCCTTCAGCTCGTACCAATGCCACAATGAGTGTTGTGTGGCTgggtctgtctcctgtctcagacTGGATGGTTCTCTCAACATGCCTGTCAACTCTGCCTGCTGTGGCCTGGGGAGTCTCTCCCTCCTGGCTCTGAGTGTAACCTCTCTACTGGACAATCTACTCAACACTCGCTAATCTACTAACCTTCATGTGACATTAGACTCACTTTAGAATGCAGAGGGTTTAGTATGGATCGACTAAATGCAgatttcagttttgtcatatcCACTGCTTGGGCGTCATTAGTTCTTTCATGTTTTCTTCATCTGTGAATGCAAGCTCTCGTGAAAATAAAACTGTTTTCCAGCTTTATGTTGTTCTTAAATAACACATCCCAACCTCTAGTGGATCCAGTCATGGGT

Function

NR:

description
uncharacterized protein LOC110496422 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572309.2 False 2120 mRNA 0.43 5 49201226 49203888
XM_036952991.1 True 2239 mRNA 0.42 4 49201226 49203888

Neighbor

gene id symbol gene type direction distance location
LOC110496418 LOC106588662 coding downstream 652 49186672 ~ 49200574 (-)
LOC110496840 LOC106588661 coding downstream 18344 49150285 ~ 49182882 (-)
LOC110496415 LOC106588660 coding downstream 55079 49134674 ~ 49146147 (-)
LOC110496416 LOC106588659 coding downstream 66846 49130928 ~ 49134380 (-)
LOC110496414 LOC106570277 coding downstream 69868 49123749 ~ 49131358 (-)
LOC110496421 LOC106588664 coding upstream 97 49203985 ~ 49209483 (-)
LOC110496424 LOC106588667 coding upstream 91684 49295572 ~ 49297343 (-)
LOC100135978 LOC106588669 coding upstream 128793 49332681 ~ 49473129 (-)
LOC118940996 NA coding upstream 176968 49380856 ~ 49397467 (-)
LOC110496426 LOC106588671 coding upstream 563252 49767140 ~ 49796975 (-)
G1557879 NA non-coding downstream 115205 49084672 ~ 49086021 (-)
G1557376 NA non-coding downstream 160774 49040180 ~ 49040452 (-)
G1557360 NA non-coding downstream 171210 49029769 ~ 49030016 (-)
G1557202 NA non-coding downstream 466438 48734557 ~ 48734788 (-)
G1557993 NA non-coding upstream 58769 49262657 ~ 49319527 (-)
G1558076 NA non-coding upstream 273464 49477352 ~ 49477569 (-)
G1558118 LOC106582599 non-coding upstream 340425 49544313 ~ 49544584 (-)
G1558134 NA non-coding upstream 377086 49580974 ~ 49581482 (-)
G1558139 NA non-coding upstream 382455 49586343 ~ 49586880 (-)
G1556577 NA other downstream 844379 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 1217617 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 1255652 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1654655 47543208 ~ 47546614 (-)
G1555168 NA other downstream 2288311 46911977 ~ 46912915 (-)
G1558535 NA other upstream 764008 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 819203 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1152381 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1233109 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1419203 50623091 ~ 50623983 (-)

Expression


Co-expression Network