LOC110496421 (LOC106588664)


Basic Information

Item Value
gene id LOC110496421
gene name LOC106588664
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49203985 ~ 49209483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572308.2
ATCCAAGCAAAGTATTATggagttgtactccagtctagtagatggcggtaatgcaacatttattggatgccaaccgctgtTAAATCTCATCGAAGAAGAATTGGGATAGAAATTAAAGCTTGACCTGGCAACCCTGCTGTGGAACTAGTTCCTCTCAGTCCCAACATGCGCCATTGAATATAAACGTAACTGAAGTTTCACGGCATTCATTGTTCAAGTCCTTCTTATTTCTGTAATTTGTTGGTCAGAAAATAACAATGGAGACGATTTTAGAACAACAACGTCGCTACCATGAGGAGAAGGAAAGGCTGTTGGATGCCAAAACTAAGGAAATGATGCATAAGAAAACCACGTTACGCGAACAAATAAACTCAGACCATCGAACAAGAGCAATGTTGGATAGATACATGGACGTGAGTTCAACTGTCAGGGAAGCATATGAAGACAAAGATGGTATGAGGAAGGATGAACTGAACGCCATCTCAGGACCAAATGAGTTTGCAgagttctacaacagactaaaaCAGATCAAGGAGTTCCACAGGAAGCATCCTAATGAGATCTGTGTGCCCATGTCTGTGGAGTTTGATGAGCTGGTCAAGGCTAGAGAGAACCCAACTGAAGAAACACAGAACATGGTGGAGTTCAGTGATGAGGAGGCGTACGGACGCTACCTGGATCTTCATGACTGCTATCGGAAGTTCATCAACCTGAAAGGGGCAGAGAAACTGGAGTACATCAGCTACCTTTCCTCATTTGACCAGCTGTTTGATGTCTCCAAGGACAGAAAGAATGCTGAATACAAAAAGTACTTAGAGATGCTACTGGAGTACCTTCAGGACTACACAGAGAGAGTCAAACCTCTGCTGGACCAGAATGATCTCTACGGCAAGATCCTGGGAGAGTTTGAGAAGAAGTGGGAGATGGGGACCTTCCCTGGCTGGCCAAAAGAGACGAGCAGTGCTCTGACACACGCCGGAGCTCATCTAGACCTTTCTGCTTTCTCCTCTTGGGAGGAGTTGGCTTCCTTGGGTCTGGACAGGTTGAAGTCTGCCCTTATGGCCCTGGGCCTGAAATGTGGAGGAACCCTGGAAGAGAGAGCTCAGAGGCTGTTTAGCACCAAAGGAAAATCCCTGGAATCTCTGGATCCCTCCTTGTTCGCCAAGAACCCTAAGTCCAAGGGACCCAAGAAAGACACAGAGCGTAACAAAGAAGTCGCCTTCCTGGAGTCTCAGGTTTATGAGTATGTGGAAATCCTGGGGGAGCAGAGGCAGCTGACCCATGAGAACGTGCAGAGGAAGCAGgccaggacaggagaggagagagaggaggaagaggaggagcagctcagtgagagtgagagtgaagaTGAGGACAACGAGATAATCTACAACCCCAAGAACCTGCCTCTCGGCTGGGATGGAAAGCCCATTCCATACTGGCTGTACAAACTCCATGGCCTGAACATCAATTATAACTGTGAGATCTGTGGAAACTACACGTACAGAGGACCCAAGGCCTTCCAGAGGCACTTTGCAgagTGGCGTCACGCCCATGGCATGCGCTGCCTGGGAATCCCCAACACGGCTCACTTTGCCAACGTTACCCAGATCGAGGACGCTGTCTCTCTATGGTCAAAGCTGAAGTCACAGAAGGCATCAGAGCGCTGGCAACCAGATACAGAGGAGGAGTACGAGGACTCCAGTGGAAACGTGGTCAACAAGAAGACCTACGAGGACCTGAAGAGACAGGGTCTGCTGTAGAGAGGAGACCGACAAAGACTTGGAAACCTTGAAGCGCAACGTGATgcccaattattatttttttatttggcgtTTGACCCTTGACCTTTTCATTTACACTTTTCATTTAGAAGTTGTGATGTTGTTTTTATTAATTCCTTCCTTTGAcaaccatttagaaatgaaacaGCCATTGATTCTAATAATAAATGAGTAATATTTGTCACCA

Function

NR:

description
PREDICTED: splicing factor 3A subunit 3

GO:

id name namespace
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12827 SF3A3, SAP61, PRP9; splicing factor 3A subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572308.2 True 1971 mRNA 0.47 15 49203985 49209483

Neighbor

gene id symbol gene type direction distance location
LOC110496422 LOC106588665 coding downstream 97 49201226 ~ 49203888 (-)
LOC110496418 LOC106588662 coding downstream 3411 49186672 ~ 49200574 (-)
LOC110496840 LOC106588661 coding downstream 21103 49150285 ~ 49182882 (-)
LOC110496415 LOC106588660 coding downstream 57838 49134674 ~ 49146147 (-)
LOC110496416 LOC106588659 coding downstream 69605 49130928 ~ 49134380 (-)
LOC110496424 LOC106588667 coding upstream 86089 49295572 ~ 49297343 (-)
LOC100135978 LOC106588669 coding upstream 123198 49332681 ~ 49473129 (-)
LOC118940996 NA coding upstream 171373 49380856 ~ 49397467 (-)
LOC110496426 LOC106588671 coding upstream 557657 49767140 ~ 49796975 (-)
LOC110496431 LOC106588678 coding upstream 763971 49973454 ~ 49982570 (-)
G1557879 NA non-coding downstream 117964 49084672 ~ 49086021 (-)
G1557376 NA non-coding downstream 163533 49040180 ~ 49040452 (-)
G1557360 NA non-coding downstream 173969 49029769 ~ 49030016 (-)
G1557202 NA non-coding downstream 469197 48734557 ~ 48734788 (-)
G1557993 NA non-coding upstream 53174 49262657 ~ 49319527 (-)
G1558076 NA non-coding upstream 267869 49477352 ~ 49477569 (-)
G1558118 LOC106582599 non-coding upstream 334830 49544313 ~ 49544584 (-)
G1558134 NA non-coding upstream 371491 49580974 ~ 49581482 (-)
G1558139 NA non-coding upstream 376860 49586343 ~ 49586880 (-)
G1556577 NA other downstream 847138 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 1220376 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 1258411 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1657414 47543208 ~ 47546614 (-)
G1555168 NA other downstream 2291070 46911977 ~ 46912915 (-)
G1558535 NA other upstream 758413 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 813608 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1146786 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1227514 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1413608 50623091 ~ 50623983 (-)

Expression


Co-expression Network