LOC110496434 (LOC106588680)


Basic Information

Item Value
gene id LOC110496434
gene name LOC106588680
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50023087 ~ 50034167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953014.1
CTTCACTTGGACATTCCGATTACAACGGGAACAATAAGCAGAGTGCTAAGGAGGGTCATAGGGGAACGTTTGAAAGTAATATCGACCATATGCAAAATACCACTACGGATGTTAGTCATCACACAGCTCCGAGGAAGTACATGTCAAGTAAATGTACTTGATTTAAAGCGAATTAAGATACCTGTCGCACTTCTACCCCTTGCTATATAACCTAGTGCAGTACTACAGTGTGGTCACAAAGACCCAACAGGACCAAGGTGTAGGCGCTGTAGAGCGGCAGAGCGCGCGGACTGGAGCAGAGAGGGAACTGAGCGGAGGTTTCAACCAAGGAAGGAACATTTCATTTTTGCGTACGCTTAAGACACTTATGTGGAGAGGAGACGATACCAATTTCCGCAGGTGTAAACATCGAGCTCTCAAAAGTCAGAGAGGGgttgaaaaacatttaaactcagtgtaCAAGTGCTTTAATAGCCTatttatactttttaaaataGAAACAAACGAAGAAAGAATAGTTTTAGGGCGGAACAGTTGCGCGCAACAGATAGCTGCATCATGAAATTACTTCTACCGCTTGTGATAGCTTTTATTGCTATTGCccaatttttttgtgaagaaattGGTCCAAAAGAAGATCTTGATTATTGGACAAACGATCAAATTACGGACGAGTGGCTGTCGTCTGACCCGTTCAGAGAGATACTGCGGAGGATGACGCGGAAACCGCGGCCTCATCAGTTCTTTGGCCTGATGGGGAAACGCTCCTCCGCGAATGCACAGATAACCCGAAAAAGGCATAAAATTAACTCCTTTGTTGGATTGATGGGCAAGAGGAGCCAAGACGAACCAGATTCATTTGAGTGGAACACACAACAGAACTACAACAAGCGCCGCTAACCAGTTAATCTGTATCCAGTCCTCTGCTATTGGTCCGCTTCTCAACAAGTCATTCCTACAGAAGATCGGAAGGGGTGTCTGATGCGTAGTTTTGTTTCCTCCAAAATATGTGTCGTCAAATTGATTGTAATTCCCGTAATAAAATGTCTGTTTCCACATCGTGTTGATGTAGCTGTACTGTACCTGACTGTGCCAATTTGACTTGTTCAGGAAGAATGCAGGAGTGTGATCTGAATAGGGTTACAAAATTCTGTTAGTTTTCCCAATCATTCCCAGGTTTTCTAGAAATTCCGGTTTGAAGATTGGAATTAGATGGGAAATCATAAAACTGACATTGTCACCCTCGGTGTGAACTGATACTGCTACCGTACCTTACAGAAACATTATGTTATTTAATGTATGTCAAACTATTTTAGTACCATCACCATATCATCGGTTCCAGAGAATACTGTTGTCGTGGACCATCAAAGCAAAGCTCTACCCCAGGGTATGTAGAAAATTGCACTGCCAATCCCACTGTCTAGTGCCTCAACTGTTTTAATCACAACTGATTGTTCTGTAAATAAACTAAATACTCTGGTACACTACAGACATGCTGCTCCATCAGGACATGCTCTCATTTAAATTGACTGTAAATCAAACTGTCATGTTTATGAAACCAAGACGTATGGTATGACAGAATACTTGTATGTAATTGTGGCTTGATATATTAAAACTATTTTCTTTATTGG
>TU1783125
GGGAACAATAAGCAGAGTGCTAAGGAGGGTCATAGGGGAACGTTTGAAAGTAATATCGACCATATGCAAAATACCACTACGGATGTTAGTCATCACACAGCTCCGAGGAAGTACATGTCAAGTAAATGTACTTGATTTAAAGCGAATTAAGATACCTGTCGCACTTCTACCCCTTGCTATATAACCTAGTGCAGTACTACAGTGTGGTCACAAAGACCCAACAGGACCAAGGTGTAGGCGCTGTAGAGCGGCAGAGCGCGCGGACTGGAGCAGAGAGGGAACTGAGCGGAGGTTTCAACCAAGGAAGGAACATTTCATTTTTGCGTACGCTTAAGACACTTATGTGGAGAGGAGACGATACCAATTTCCGCAGGTGTAAACATCGAGCTCTCAAAAGTCAGAGAGGGgttgaaaaacatttaaactcagtgtaCAAGTGCTTTAATAGCCTatttatactttttaaaataGAAACAAACGAAGAAAGAATAGTTTTAGGGCGGAACAGTTGCGCGCAACAGATAGCTGCATCATGAAATTACTTCTACCGCTTGTGATAGCTTTTATTGCTATTGCccaatttttttgtgaagaaattGGTCCAAAAGAAGATCTTGATTATTGGACAAACGATCAAATTACGGACGAGTGGCTGTCGTCTGACCCGTTCAGAGAGATACTGCGGAGGATGACGCGGAAACCGCGGCCTCATCAGTTCTTTGGCCTGATGGGGAAACGCTCCTCCGCGAATGCACAGATAACCCGAAAAAGGCATAAAATTAACTCCTTTGTTGGATTGATGGGCAAGAGGAGCCAAGACGAACCAGATTCATTTGAGTGGAACACACAACAGAACTACAACAAGCGCCGCTAACCAGTTAATCTGTATCCAGTCCTCTGCTATTGGTCCGCTTCTCAACAAGTCATTCCTACAGAAGATCGGAAGGGGTGTCTGATGCGTAGTTTTGTTTCCTCCAAAATATGTGTCGTCAAATTGATTGTAATTCCCGTAATAAAATGTCTGTTTCCACATCGTGTTGATGTAGCTGTACTGTACCTGACTGTGCCAATTTGACTTGTTCAGGAAGAATGCAGGAGTGTGATCTGAATAGGGTTACAAAATTCTGTTAGTTTTCCCAATCATTCCCAGGTTTTCTAGAAATTCCGGTTTGAAGATTGGAATTAGATGGGAAATCATAAAACTGACATTGTCACCCTCGGTGTGAACTGATACTGCTACCGTACCTTACAGAAACATTATGTTATTTAATGTATGTCAAACTATTTTAGTACCATCACCATATCATCGGTTCCAGAGAATACTGTTGTCGTGGACCATCAAAGCAAAGCTCTACCCCAGGGTATGTAGAAAATTGCACTGCCAATCCCACTGTCTAGTGCCTCAACTGTTTTAATCACAACTGATTGTTCTGTAAATAAACTAAATACTCTGGTACACTACAGACATGCTGCTCCATCAGGACATGCTCTCATTTAAATTGACTGTAAATCAAACTGTCATGTTTATGAAACCAAGACGTATGGTATGACAGAATACTTGTATGTAATTGTGGCTTGATATATTAAAACTATTTTCTTTA

Function

NR:

description
protachykinin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953014.1 False 1631 mRNA 0.42 6 50023087 50034167
TU1783125 True 1601 TUCP 0.42 6 50023091 50034141

Neighbor

gene id symbol gene type direction distance location
LOC110496431 LOC106588678 coding downstream 40517 49973454 ~ 49982570 (-)
LOC110496426 LOC106588671 coding downstream 226112 49767140 ~ 49796975 (-)
LOC100135978 LOC106588669 coding downstream 549958 49332681 ~ 49473129 (-)
LOC118940996 NA coding downstream 625620 49380856 ~ 49397467 (-)
LOC110496424 LOC106588667 coding downstream 725744 49295572 ~ 49297343 (-)
LOC110496842 LOC106588681 coding upstream 71115 50105282 ~ 50143368 (-)
rfa3 rfa3 coding upstream 114137 50148304 ~ 50149605 (-)
LOC118941183 NA coding upstream 117856 50152023 ~ 50197214 (-)
LOC110496438 LOC106588686 coding upstream 221854 50256021 ~ 50359132 (-)
LOC110496443 LOC106588718 coding upstream 509212 50543379 ~ 50592411 (-)
G1558557 NA non-coding downstream 16509 50006344 ~ 50006578 (-)
G1558551 NA non-coding downstream 21105 49992109 ~ 50001982 (-)
G1558460 NA non-coding downstream 100396 49921197 ~ 49922691 (-)
G1558459 NA non-coding downstream 138617 49876508 ~ 49884470 (-)
G1558254 NA non-coding downstream 175661 49847163 ~ 49847426 (-)
G1558639 NA non-coding upstream 116731 50150898 ~ 50151114 (-)
G1558649 NA non-coding upstream 123632 50157799 ~ 50158258 (-)
G1558641 LOC106588684 non-coding upstream 125520 50159687 ~ 50164221 (-)
G1558698 NA non-coding upstream 210774 50244941 ~ 50245230 (-)
G1558699 NA non-coding upstream 211387 50245554 ~ 50245787 (-)
G1558535 NA other downstream 54479 49967896 ~ 49968608 (-)
G1556577 NA other downstream 1666240 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 2039478 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 2077513 47890580 ~ 47945574 (-)
G1555543 NA other downstream 2476516 47543208 ~ 47546614 (-)
G1558916 NA other upstream 402830 50436997 ~ 50437459 (-)
G1559205 NA other upstream 588924 50623091 ~ 50623983 (-)
thsd7aa LOC106588717 other upstream 601236 50599944 ~ 50755992 (-)
LOC110496463 LOC106588703 other upstream 1178988 51213151 ~ 51214398 (-)

Expression


Co-expression Network