LOC110496443 (LOC106588718)


Basic Information

Item Value
gene id LOC110496443
gene name LOC106588718
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50543379 ~ 50592411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953027.1
ACCGCACGTCAGTAAATGAAAAGCTTTTCTGTCGAGCTTTAGTGGCTGTTTAAAGACTGCACTCTGTGATTCTTTCGTCTCGGACCGATCTCGCCCCGTTTTTTAATatttccctcgctcctctcctcccctccttcctcttctctctctctcatgttctgtgtggacagAGCGACGGAGTTTCTCTCAACCCAGATGTGTAATAGGCGCGCGTTTTCCAGAGGCTCGGTTATAAAGCGTCCGTTATTTATCCGACTACTTTCAACTGTTCTCCTTTTCGACAAAGAGCCAGCGAAGGGAAACTAGTGGAAGTTTGAGACCAGGAAGAATGCAGGCGACGTGTTGGTGTGCGGTGTTACTCCTGACGCCAGCGTTTTACTTGgtGACAAGTGTTCATGCTTCCAAGGCGGACCTCCTCAAGTCGGGCAGCCCCAAGTCGACGTTAAAACACATATGGACAGAAAGCAGCAAGGACCTGTCAATCAGCAGGTTGTTGTCACAGACTCTCCATGGCAAAGAGAACACCACAGCCCTGGACCTGCGCTACGACACCCCGGAGCCCTACTCCGAGCAGGACCTCTGGGACTGGCTGAGGAACTCTACCGACCTCCAGGATTCTAGAGCAAGAGCTAAGCGGCGGCCTATGGTCAAGACGGGCAAGTTCAAGAAGATGTTCGGTTGGGGAGACTTCCACTCCAACATTAAGACGGTCAAGCTCAACCTCCTCATCACCGGGAAGATCGTGGATCACGGCAACGGAACCTTCAGCGTCTACTTCAGACACAACTCCACAGGCCAGGGCAACGTGTCTGTGAGTCTCGTCCCACCAACCAAGGTCGTGGAGTTCGACGTGGCGGCCCAGCAGTCCGTGATTGACGCCAAGGACTCCAAGTCCTTCAACTGCCGCATAGAGTACGAGAAGGTGGAGAAGGGCGCCAGGAACACGCTGTGTAACTTCGACCCGTCCAAGACGTGTTACCAGGAGCAGACTCAGAGCCACGTCTCCTGGCTCTGTTCCAAGCCCTTTAAAGTCATCTGCATCTACATCTCCTTCTACAGCACTGACTACAAGTTGGTGCAGAAAGTCTGTCCGGACTACAACTACCACAGTGACACTCCTTACTTCCCCTCTGGCTGACCACTCCCACAACAACAATCCCAATGTGAAGGACCAGTAAGTTACAAAGCGgggcttcttcttctttttccccGCCCAGAGAAATATATGTTAGCTGTACTGTTCTGAAAATAAAAGAATGTGTAAAATGAATTGATTATCTATTTATGAAATTAAGACAATAGAGAAAGTAAAGACTTATGGGGCATTATTATTTTGTCTTTCAAGTGTTGTGCAAAAccattattattataaatataataattattatattaatattattagtATACAAATACTATGACTAAACAAATAATATTGATTATAATTCATTTGTTTTATAGATTTCATACCTTTTTTCATCAGTGATTTCATAGATGCATCATGTGTACATATTTGGGGTTGATAGTTCCATTTGTAACTAAGTAAAATCAGAATTTCAAATAAGTCTTATTAGTTTGTAACAACTTGTTAATGTTATCAATATGTTATATTCATTTTCTTGGTCCAGTTTGATTCTAGGTGCTTTAATTTTCTCCTTTTAGTATTTCTTACTTTGCTCCTTAGGGCCACCATACTTTCTGTATGAAAGTTCAGTTCTGTGAGCTACCAATTGGATGGCAGCATACATGATCCTATGTTTAGTTTGCACCTGCAATACTCTTCATTCATAGCAGCTCAATTCCGCTCTCTCAGAAATAACAGTCCAGACTCCTACCCTTGAAGGTCTACAAGATCCCCACACATTTCCAAATTCTTTGACCCCACAGTCGAGAGagctgaggaagaggagagtgtCAGTGTGCAATCCAAGTAGGTGGTCTTACCTAGCACTGACAGGATTCTCCCGCAGGCatgttttataaaaaaaataaaaataaacgcaTTTTACATGTTCAGGAATGATGCTGTTCAATCTTCAGCTTGTCCCTGTATAAGTCCTGGCTCAGATTATTATTAGCAAATCACAGCCTTATTAGGTTTATTGTTAATATTCAGTTGTGATTGATTGGGGGGCTTTGCTCATTGTCATTGACTTAATAAAAATTGTAATGTAATGAATTCTATATCTTAGAGAGCCTAATTTGTATGAATGGTTTGTATTGTACATAGTTTATCCTGAATTGAGCTGCGTCTGTATATGCCCACATAAAGCTGTCTCCCCCTtcccacaatctctctctctctctctctctctctctctcgctctctctctctctctctcttgtgaaTCCGTGAAAACAGCAACCCTGTACATACGCTGTAGAACTGTCTAAATATATTACAAGTATTCATCAAATGTATGACTTTTATTTCTGGGAGAAGGATGGGATGGAGGTGTACATATGAATAAAAATACTGTATGTTTTATCAGTTGAATGTT

Function

NR:

description
PREDICTED: neurexophilin-1-like

GO: NA

KEGG:

id description
K16656 NXPH1; neurexophilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953027.1 True 2498 mRNA 0.43 3 50543379 50592411

Neighbor

gene id symbol gene type direction distance location
LOC110496438 LOC106588686 coding downstream 184247 50256021 ~ 50359132 (-)
LOC118941183 NA coding downstream 346165 50152023 ~ 50197214 (-)
rfa3 rfa3 coding downstream 393774 50148304 ~ 50149605 (-)
LOC110496842 LOC106588681 coding downstream 400011 50105282 ~ 50143368 (-)
LOC110496434 LOC106588680 coding downstream 509212 50023087 ~ 50034167 (-)
thsd7aa LOC106588717 coding upstream 7544 50599944 ~ 50755992 (-)
LOC110496448 LOC106588712 coding upstream 405112 50997523 ~ 51012139 (-)
LOC110496450 LOC106588689 coding upstream 453991 51046402 ~ 51049503 (-)
LOC110496449 LOC106588710 coding upstream 460356 51052767 ~ 51067584 (-)
agr2 agr2 coding upstream 501681 51094092 ~ 51096890 (-)
G1559159 NA non-coding downstream 11281 50531852 ~ 50532098 (-)
G1559152 NA non-coding downstream 19481 50523655 ~ 50523898 (-)
G1559148 NA non-coding downstream 25635 50517541 ~ 50517744 (-)
G1559116 NA non-coding downstream 58230 50463966 ~ 50485149 (-)
G1558940 NA non-coding downstream 88642 50454510 ~ 50454737 (-)
G1559190 NA non-coding upstream 2997 50595408 ~ 50595621 (-)
G1559195 NA non-coding upstream 17446 50609857 ~ 50610085 (-)
G1559196 NA non-coding upstream 18173 50610584 ~ 50610810 (-)
G1559212 NA non-coding upstream 39040 50631451 ~ 50631668 (-)
G1558916 NA other downstream 105920 50436997 ~ 50437459 (-)
G1558535 NA other downstream 574771 49967896 ~ 49968608 (-)
G1556577 NA other downstream 2186532 48356613 ~ 48356847 (-)
G1559205 NA other upstream 30680 50623091 ~ 50623983 (-)
LOC110496463 LOC106588703 other upstream 620744 51213151 ~ 51214398 (-)
G1560339 NA other upstream 790261 51381731 ~ 51455285 (-)
trak1b LOC106588779 other upstream 1586909 52179320 ~ 52240648 (-)

Expression


Co-expression Network