LOC110496448 (LOC106588712)


Basic Information

Item Value
gene id LOC110496448
gene name LOC106588712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50997523 ~ 51012139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572364.2
ccaacttccCTGGAACCACCTTCTCCCTGGAACCACTCTGGCCTCAGccgtctctcttctcctccgtctctcctctcctccgtctctcctctccgtctACCATCTCAGCATAGTCAGTGTTTACCAGCGCTGCGCCTGGCAACAAGCTGCATGCTCAGGATTACAGGAGGCCTTACCTTTCAACACTGTGAGCTCTGCCTTCCTGCTTCGATCTCTCTCCTTGGGAACTAACGCGGGGCACACGGAGGTGCGAGGTGAGAGAGCCGTGGAGGAGAGCCCTGATTTGAGGCGCCGTGTCCGCACACCTCCCTCAACTGGCTTCagtcctctctactctctctctgtcttgtggTCTCGATTAGTGTCTGGTTGTTCCTGGAGGTtttggtggttgtgtgtgtggtggactTAGGGGAGTTCGTCTCACGGGTGGATCTCGTGGAGCACCGTGATGGATCACTCCCTGTTTGGGTGCCTCCGGAGCCCCCACGCCCCGGCCCAGGGCCTGCACCCCCACCCTGCCTTTACCCAGTCCCCGCTGGTGCTGCACGGACGCTCCGACCACATCTCCTACTCCAACCTGCCCGACTCCTCGTCCCCCTGTGGGGGGTACCCTGGACCTGGGGGGGAGGAGGCGTACGGAGGGCAGCAACACCACCATCGTGGAGGACACCTCCATCAGCATCAGCAGCATCCCCACCACTCACAGCACCAGGCCCACCAGACCCCCTGGCATGTCCCCCAGATTCCCTCACCCAACACCAGGCATGGCCTCTGCCTGCCTCCTCCGGACAGGCAAGTCTCAGAACTGTGTGGTGGAGGGACCGTGAATCTGTGTGGATTCCAGACTAACCCCGGTCTAGGAGGTAGTAGTGACCCTACAGGTGTGTCGTGTGTTCCTGGGGACGTTGGACGACAGACGATGTCCCCGGACGAGACGGAACAGAGACGGAACAGTAAAGGAAAAGATGACTTGCACAGCTCAGaTTCCCAGGACGGGAGCTATAAGTCTGACGTGAACAGCAAGCCCAGGAAGGAGAGGACAGCGTTCACCAAGGAACAGATCCGGGAACTGGAGTCAGAGTTTGCGCACCACAACTACCTGACGAGACTTAGGCGATATGAGATAGCAGTCAACCTCGACCTCACAGAAAGACAAgtgaaGGTGTGGTTCCAGAACAGAAGGATGAAGTGGAAGCGTGTTAAAGGAGGTCAACAGGGGGCAGCAGCCCGGGAAAAAGAACTTGTCAACGCGAAGAAGGGAACGCTGTTGCCGTCAGAGTACTGTGGCATGGTGGGAGGATTACACCACTCCTCCAGTTCCCCTGGTAATGAGGACAGTCACGACAGCGACCAGAGCTCAGAGCACGCTCAGTTATGACCCTGACCCGCCACATAGGCCACGCAGTGGTCAAAGGTAAATTTTGTAGCCATTTGGACAAACGTCTAAAATTGCAGTGAGTTGATGTGATCATGTTGCATTTGTAGGTACAGAATTACATACATAGGCCTACATACTCACTATGCTCTCATGAGTAGAAAGAAGACATGGGCTTATACTCTCTCAAGAAACAGCAGCGGGTGTTCTGACTAAAGGTGTTTGTTGACTGGCTAAGGAGTGGAGGAAGAAAGATAAAGTAAAGGTAAGCAAGAAGAGGAAGGAATGGAACGAGGATGGAATGATCAACTGGATGTGTaagatcaaataaaaaaatatatgcttGTGAGCAAAGCCTCAAGCTCCTGAGACTGTAAATTGGGAATATAACAGGATATTATTGTGAACATTCCACAAGTGCCTTGCATTGATAAAATGGCTTGGATTTTTGCACTGTCAAATACTAAATTCTACTGTATTTTCTCGGTTTGGAATACGACAATCATGCAATGAGCTTTAAGTAAAAATgtggaattgaattgaatagtaGGCTATTACCGTGAGTCCTATTATTCTGCTTTACTCACAACATAACTGAATGATGCATATTCATCTCCCGACTGTTGATCCATTGGTTTTACATTGTTCTCCCACTAAGTCTTAAAAGTTTACCTTtgagtgaaatatatatatatatatatcattttattACATATAAATCTGGGACATAATGGTTTCTTAAGTGAATAAAACTGA
>XM_021572365.2
ccaacttccCTGGAACCACCTTCTCCCTGGAACCACTCTGGCCTCAGccgtctctcttctcctccgtctctcctctcctccgtctctcctctccgtctACCATCTCAGCATAGTCAGTGTTTACCAGCGCTGCGCCTGGCAACAAGCTGCATGCTCAGGATTACAGGAGGCCTTACCTTTCAACACTGTGAGCTCTGCCTTCCTGCTTCGATCTCTCTCCTTGGGAACTAACGCGGGGCACACGGAGGTGCGAGGTGAGAGAGCCGTGGAGGAGAGCCCTGATTTGAGGCGCCGTGTCCGCACACCTCCCTCAACTGGCTTCagtcctctctactctctctctgtcttgtggTCTCGATTAGTGTCTGGTTGTTCCTGGAGGTtttggtggttgtgtgtgtggtggactTAGGGGAGTTCGTCTCACGGGTGGATCTCGTGGAGCACCGTGATGGATCACTCCCTGTTTGGGTGCCTCCGGAGCCCCCACGCCCCGGCCCAGGGCCTGCACCCCCACCCTGCCTTTACCCAGTCCCCGCTGGTGCTGCACGGACGCTCCGACCACATCTCCTACTCCAACCTGCCCGACTCCTCGTCCCCCTGTGGGGGGTACCCTGGACCTGGGGGGGAGGAGGCGTACGGAGGGCAGCAACACCACCATCGTGGAGGACACCTCCATCAGCATCAGCAGCATCCCCACCACTCACAGCACCAGGCCCACCAGACCCCCTGGCATGTCCCCCAGATTCCCTCACCCAACACCAGGCATGGCCTCTGCCTGCCTCCTCCGGACAGGCAAGTCTCAGAACTGTGTGGTGGAGGGACCGTGAATCTGTGTGGATTCCAGACTAACCCCGGTCTAGGAGGTAGTAGTGACCCTACAGGTGTGTCGTGTGTTCCTGGGGACGTTGGACGACAGACGATGTCCCCGGACGAGACGGAACAGAGACGGAACAGTAAAGGAAAAGATGACTTGCACAGCTCAGaTTCCCAGGACGGGAGCTATAAGTCTGACGTGAACAGCAAGCCCAGGAAGGAGAGGACAGCGTTCACCAAGGAACAGATCCGGGAACTGGAGTCAGAGTTTGCGCACCACAACTACCTGACGAGACTTAGGCGATATGAGATAGCAGTCAACCTCGACCTCACAGAAAGACAAgtgaaGGTGTGGTTCCAGAACAGAAGGATGAAGTGGAAGCGTGTTAAAGGAGGTCAACAGGGGGCAGCAGCCCGGGAAAAAGAACTTGTCAACGCGAAGAAGGGAACGCTGTTGCCGTCAGAGTACTGTGGCATGGTGGGAGGATTACACCACTCCTCCAGTTCCCCTGGTAATGAGGACAGTCACGACAGCGACCAGAGCTCAGAGCACGCTCAGTTATGACCCTGACCCGCCACATAGGCCACGCAGTGGTCAAAGAAAGAAGACATGGGCTTATACTCTCTCAAGAAACAGCAGCGGGTGTTCTGACTAAAGGTGTTTGTTGACTGGCTAAGGAGTGGAGGAAGAAAGATAAAGTAAAGGTAAGCAAGAAGAGGAAGGAATGGAACGAGGATGGAATGATCAACTGGATGTGTaagatcaaataaaaaaatatatgcttGTGAGCAAAGCCTCAAGCTCCTGAGACTGTAAATTGGGAATATAACAGGATATTATTGTGAACATTCCACAAGTGCCTTGCATTGATAAAATGGCTTGGATTTTTGCACTGTCAAATACTAAATTCTACTGTATTTTCTCGGTTTGGAATACGACAATCATGCAATGAGCTTTAAGTAAAAATgtggaattgaattgaatagtaGGCTATTACCGTGAGTCCTATTATTCTGCTTTACTCACAACATAACTGAATGATGCATATTCATCTCCCGACTGTTGATCCATTGGTTTTACATTGTTCTCCCACTAAGTCTTAAAAGTTTACCTTtgagtgaaatatatatatatatatatcattttattACATATAAATCTGGGACATAATGGTTTCTTAAGTGAATAAAACTGA

Function

NR:

description
homeobox protein MOX-2-like

GO: NA

KEGG:

id description
K09322 MEOX, MOX; homeobox protein MOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572364.2 False 2134 mRNA 0.51 3 50997523 51012139
XM_021572365.2 True 2012 mRNA 0.51 4 50997523 51012139

Neighbor

gene id symbol gene type direction distance location
thsd7aa LOC106588717 coding downstream 241531 50599944 ~ 50755992 (-)
LOC110496443 LOC106588718 coding downstream 405112 50543379 ~ 50592411 (-)
LOC110496438 LOC106588686 coding downstream 638391 50256021 ~ 50359132 (-)
LOC118941183 NA coding downstream 800309 50152023 ~ 50197214 (-)
rfa3 rfa3 coding downstream 847918 50148304 ~ 50149605 (-)
LOC110496450 LOC106588689 coding upstream 34263 51046402 ~ 51049503 (-)
LOC110496449 LOC106588710 coding upstream 40628 51052767 ~ 51067584 (-)
agr2 agr2 coding upstream 81953 51094092 ~ 51096890 (-)
LOC110496457 LOC106588707 coding upstream 89740 51101879 ~ 51114958 (-)
LOC110496456 abcf1 coding upstream 105522 51117661 ~ 51149891 (-)
G1560118 NA non-coding downstream 43816 50946532 ~ 50953707 (-)
G1560085 NA non-coding downstream 45078 50945216 ~ 50952445 (-)
G1560082 NA non-coding downstream 114469 50882804 ~ 50883054 (-)
G1560073 NA non-coding downstream 114791 50870293 ~ 50882732 (-)
G1560064 LOC106588714 non-coding downstream 130883 50865256 ~ 50866640 (-)
G1560165 NA non-coding upstream 9358 51021497 ~ 51021912 (-)
G1560205 LOC106588711 non-coding upstream 71775 51083914 ~ 51084398 (-)
G1560208 NA non-coding upstream 73748 51085887 ~ 51086600 (-)
G1560214 NA non-coding upstream 79062 51091201 ~ 51100402 (-)
G1559205 NA other downstream 373540 50623091 ~ 50623983 (-)
G1558916 NA other downstream 560064 50436997 ~ 50437459 (-)
LOC110496434 LOC106588680 other downstream 963382 50023087 ~ 50034167 (-)
LOC110496463 LOC106588703 other upstream 201016 51213151 ~ 51214398 (-)
G1560339 NA other upstream 370533 51381731 ~ 51455285 (-)
trak1b LOC106588779 other upstream 1167181 52179320 ~ 52240648 (-)
G1561167 NA other upstream 1237215 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 1344613 52352725 ~ 52396978 (-)

Expression


Co-expression Network