LOC110496450 (LOC106588689)


Basic Information

Item Value
gene id LOC110496450
gene name LOC106588689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51046402 ~ 51049503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572367.2
TAAGCGACTGAACGACAAGTAACATCATAACGACacaactacctacctacctacctacctacctacctacctacctgtctatcTGTACTGCGGAGTGCCTACGGAGAGTTGCAGGGATGCTTCTTACCACGAGTGTGTTCCAGCTCGCGCTCTTCTGCCTTCTTATAAGTAACTGTCCAGCTGCCAAGAACAGCGATACGGAAAAGTTAAACGCTCAGTTGATCAGTACCGTCCAGGATACACCGAGTAGTAATGTATCAATGAATCAAGCACGCAACGGAGGAAGGCGTTTGACCAGCGCTGCGCGGAAAGAGCAGGGTCAGGCACAGAGCCAGGTGGGCTGCAGAGAGCTGCGTTCCACCAAGTACATCTCAGATGGTCAGTGCACCAGCTTGAACCCGGTCAAGGAGCTGGTGTGTGCCGGGGAGTGTCTTCCCTCCCACCTACTGCCCAACTGGATCGGCTCCGGTCCCGGCTACACCGGAAAGTTCTGGAGCCGCAGGGAGGCCCAGGAGTGGCGCTGCGTCATCGACCGGACCCGGACCCAGCGCATCAGCCTGCAGTGTCAGGACGGAAGGTCCAGGACCTATAAGATCACTGTGGTTACTTCCTGCAAGTGTAAACGCTACTCCAGGCAGAACAATGACTCAGGGAATGGGAAGTCAGAGCTGGAGGTCAGGCAGGCCCAGGGCCAGGGCTCCACACTCCAGGGGCccaagaggaggaagggaaaggaagggaagAATGGACGTTCTGGGCAGGAGGACTGGGCAGAAGAACAGCCTAAAAAATACTGAACTGAGCCCCCTGGTCAGGAGGGGGCTCTGTACACCTCTGAGGGGTTGGAAGGTCTCTGTGCCTCCACTTCAGAAACAACACCAACAGACACTAGTTTTGTTTAGAAGGCAACAATGTGTTTGCTGTATTTAATGCAGCTATATTGAGAAGGCTATGGAATGATTCCTCAGACAGTGCAACTGGTTTGCCAAATATTGACCACTGtggatgtgtttgtgtatgtatgcatTTTTGTATGATAGAATGAGACTAGTTCAAATCGCACAAGAACCGCATTTGACAGCTAAGATGAGGAGTTCTCTCAACAGATGAATATGTTGTCCACATCATAATGTTTAGATTAACAGAAAAAGCCAGAGTATGTATATAAATAGTGATTCTATACTCTGGGTTACTTTTTAATGTATGTCAAAGATGACTATGACAATGTAATATATTTTTGTATGGGGATAGCTGAACTAAATATAAATAAGttcatgtttttatatatttgctAGATTCTATGTAATCACTTTCAGGACAAATTGTGTCTCAAATTATTTGCCTTGGATAATGAAATAAATCATGTCTACTATGATTAGATCACTGATTGAATATAAAGAATGACTTTTCTTTAATAATTAGTATAATATGTTTTTGACTTGTCAATAAATTGTGCTTTAATCATTAGTAATTAAATGCTTTGAGCACAAGGCCACAGACAGAGGAGCTATAACTTCACAGGAAACAGGAAGTCAGTAACAACAGATGTATTAGCCAGTAATAAAATGTTATATTGAGTCTAATACAAGCTCTACTCTCTGCCGGAATCCCCTCTCCTCCAGGCTATTGGGTCTGTTCCAGTCAGCGGCTACATGTTAACATAATACCAAAATGAGCTGTCATTAAAATTGTGGTGCAAGTACCATGGGGAAGTTATGCTTTCCTCAAAGAGCATTGGGAACGCTTGATATTTGTAGTTTGGGGATGACAGCTCATTTTGGTATTAGGACAGAGTGGTTCTAAACCTGACAGTACCAGAGTAGTACAGAGTGGTGCATTCCATGAGGGAGAAGCATAGGGAAATCATGTCTGTGAATCTCAGAACGGAGCTTGCGTCATTGACACAATAATACAAGGCTTGTAAAACTTCCTCTCTGTAATTATCCCTGATTACATATTCTCCTCTGAGTAGCAGTGATGCTGTAAGACCACCTAGCTTTATTTATTACCGTAACTACCACAAACACGCTGTAAGAAACGCCCTTACAAGAAACAGAAAGTGATCCACAGGTCATGGGCCACGTTTCAACTCGTATTTGCATAGTCAATCTGCAAT

Function

NR:

description
sclerostin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572367.2 True 2116 mRNA 0.45 2 51046402 51049503

Neighbor

gene id symbol gene type direction distance location
LOC110496448 LOC106588712 coding downstream 34263 50997523 ~ 51012139 (-)
thsd7aa LOC106588717 coding downstream 290410 50599944 ~ 50755992 (-)
LOC110496443 LOC106588718 coding downstream 453991 50543379 ~ 50592411 (-)
LOC110496438 LOC106588686 coding downstream 687270 50256021 ~ 50359132 (-)
LOC118941183 NA coding downstream 849188 50152023 ~ 50197214 (-)
LOC110496449 LOC106588710 coding upstream 3264 51052767 ~ 51067584 (-)
agr2 agr2 coding upstream 44589 51094092 ~ 51096890 (-)
LOC110496457 LOC106588707 coding upstream 52376 51101879 ~ 51114958 (-)
LOC110496456 abcf1 coding upstream 68158 51117661 ~ 51149891 (-)
LOC110496455 LOC106588704 coding upstream 105911 51155414 ~ 51168138 (-)
G1560165 NA non-coding downstream 24490 51021497 ~ 51021912 (-)
G1560118 NA non-coding downstream 92695 50946532 ~ 50953707 (-)
G1560085 NA non-coding downstream 93957 50945216 ~ 50952445 (-)
G1560082 NA non-coding downstream 163348 50882804 ~ 50883054 (-)
G1560073 NA non-coding downstream 163670 50870293 ~ 50882732 (-)
G1560205 LOC106588711 non-coding upstream 34411 51083914 ~ 51084398 (-)
G1560208 NA non-coding upstream 36384 51085887 ~ 51086600 (-)
G1560214 NA non-coding upstream 41698 51091201 ~ 51100402 (-)
G1560222 NA non-coding upstream 83249 51132752 ~ 51138114 (-)
G1559205 NA other downstream 422419 50623091 ~ 50623983 (-)
G1558916 NA other downstream 608943 50436997 ~ 50437459 (-)
LOC110496434 LOC106588680 other downstream 1012261 50023087 ~ 50034167 (-)
LOC110496463 LOC106588703 other upstream 163652 51213151 ~ 51214398 (-)
G1560339 NA other upstream 333169 51381731 ~ 51455285 (-)
trak1b LOC106588779 other upstream 1129817 52179320 ~ 52240648 (-)
G1561167 NA other upstream 1199851 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 1307249 52352725 ~ 52396978 (-)

Expression


Co-expression Network