LOC110496463 (LOC106588703)


Basic Information

Item Value
gene id LOC110496463
gene name LOC106588703
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51213151 ~ 51214398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572390.2
CGATAGCTCTGCTAGAGAAGTCCTTCGGAAGTGTTGTTTTGATTATACGGTGCATTTCAGGGGTTTATTCCCCTATCTAATCCGTTCTTGTAGATGAAAGGTTGGTGCATATTCAGTTACATTCAGAAAGTTATTCTGATCAAGTAATGGTACTTTGCATTTGCCTAATCGGGCAGTTGGAAGGACGATCGTGGCTGGCCTTGAGAATCGAGCATGAATCATGCGCTGTAAAGCTAGCTGGAATCTGCTGCTAGAGCATACAAAAATacaggtGTTGGTGACACCATGGCACCACTCCTGTTATACCGCATCGTCAGCTCCCTAACCTGCCATCTAACCCAGATCACCCTCAGCCGGATCTACCCTAGCACTGCCACCACCATCTCCCGCTGCCTCTCCTCCCTTACATCCTACCCAGCCAGAGTACTCCTGACCCCGGGTAGACCCATCCAGCCCCTGGCCTCTTCTCCTCGATCTTCTCCCCAGGATGGTGGCTCCCTCCTAGGCCAGTGTCAGCACCTGGCCTGCCTCCAGCCCACTTCAGGGATGAAAACCAAGAGCGCTCTGAAACGGCGCTGTAAAGATTGCTTCTTTGTGGTACGGCGGGGTCGTCTATTTGTGTTCTGTAAGGCTCACCCCAGACACAAGCAGCGACAGGGGTGATGAGGAGCAGGGGGTGTATGGTCCTCGAAATTGTTTGTTACTTGAATTGCCACATTAAAGTTTTTGACTGATTGACC
>XR_002469558.2
AAAGAATAGGGAGATTCTCCGCCCTCCAAATACGTCCGCCTGGTCCAAGTGCCGGGAATCCCATTATATTATTCACGAATCGTTTGCAACCAACAGTAACATCATTATCATATTAAGGATTGGATTATTGTAAAGATGTGGTAGTTGATCAATTCAGCAACGCGTTACTGTTGAAATTAAAGCGAGAAAGTATGTGAAGAACCAACACAGAAACTGCTAACGTTCGTGTGACCGTTCTCAAAGTCACTTACGTCACAGCCAGGAAGAAGCGATAGCTCTGCTAGAGAAGTCCTTCGGAAGTGTTGTTTTGATTATACGGTGCATTTCAGGGGTTTATTCCCCTATCTAATCCGTTCTTGTAGATGAAAGacaggtGTTGGTGACACCATGGCACCACTCCTGTTATACCGCATCGTCAGCTCCCTAACCTGCCATCTAACCCAGATCACCCTCAGCCGGATCTACCCTAGCACTGCCACCACCATCTCCCGCTGCCTCTCCTCCCTTACATCCTACCCAGCCAGAGTACTCCTGACCCCGGGTAGACCCATCCAGCCCCTGGCCTCTTCTCCTCGATCTTCTCCCCAGGATGGTGGCTCCCTCCTAGGCCAGTGTCAGCACCTGGCCTGCCTCCAGCCCACTTCAGGGATGAAAACCAAGAGCGCTCTGAAACGGCGCTGTAAAGATTGCTTCTTTGTGGTACGGCGGGGTCGTCTATTTGTGTTCTGTAAGGCTCACCCCAGACACAAGCAGCGACAGGGGTGATGAGGAGCAGGGGGTGTATGGTCCTCGAAATTGTTTGTTACTTGAATTGCCACATTAAAGTTTTTGACTGATTGACC
>TU1785000
ACAGCCAGGAAGAAGCGATAGCTCTGCTAGAGAAGTCCTTCGGAAGTGTTGTTTTGATTATACGGTGCATTTCAGGGGTTTATTCCCCTATCTAATCCGTTCTTGTAGATGAAAGacaggtGTTGGTGACACCATGGCACCACTCCTGTTATACCGCATCGTCAGCTCCCTAACCTGCCATCTAACCCAGATCACCCTCAGCCGGATCTACCCTAGCACTGCCACCACCATCTCCCGCTGCCTCTCCTCCCTTACATCCTACCCAGCCAGAGTACTCCTGACCCCGGGTAGACCCATCCAGCCCCTGGCCTCTTCTCCTCGATCTTCTCCCCAGGATGGTGGCTCCCTCCTAGGCCAGTGTCAGCACCTGGCCTGCCTCCAGCCCACTTCAGGGATGAAAACCAAGAGCGCTCTGAAACGGCGCTGTAAAGATTGCTTCTTTGTGGTACGGCGGGGTCGTCTATTTGTGTTCTGTAAGGCTCACCCCAGACACAAGCAGCGACAGGGGTGATGAGGAGCAGGGGGTGTATGGTCCTCGAAATTGTTTGTTACTTGAATTGCCACATTAAAGTTTTTGACTGATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572390.2 False 740 mRNA 0.51 2 51213151 51214129
XR_002469558.2 False 842 mRNA 0.50 2 51213151 51214398
TU1785000 True 584 TUCP 0.53 2 51213155 51214144

Neighbor

gene id symbol gene type direction distance location
LOC110496461 lpcat1 coding downstream 7919 51168766 ~ 51205232 (-)
LOC110496455 LOC106588704 coding downstream 45013 51155414 ~ 51168138 (-)
LOC110496456 abcf1 coding downstream 63260 51117661 ~ 51149891 (-)
LOC110496457 LOC106588707 coding downstream 98193 51101879 ~ 51114958 (-)
agr2 agr2 coding downstream 116261 51094092 ~ 51096890 (-)
LOC110496464 LOC106588701 coding upstream 16080 51230478 ~ 51234928 (-)
LOC110496466 LOC106588698 coding upstream 212342 51426740 ~ 51429376 (-)
LOC110496470 LOC106588694 coding upstream 272214 51486612 ~ 51503794 (-)
trak1b LOC106588779 coding upstream 964922 52179320 ~ 52240648 (-)
zgc:110239 LOC100846955 coding upstream 1038049 52252447 ~ 52259991 (-)
G1560253 NA non-coding downstream 1446 51211296 ~ 51211705 (-)
G1560251 NA non-coding downstream 4937 51208006 ~ 51208214 (-)
G1560249 NA non-coding downstream 6084 51206848 ~ 51207067 (-)
G1560222 NA non-coding downstream 75037 51132752 ~ 51138114 (-)
G1560286 NA non-coding upstream 69834 51284232 ~ 51284547 (-)
G1560299 NA non-coding upstream 89231 51303629 ~ 51303836 (-)
G1560300 NA non-coding upstream 91740 51306138 ~ 51306338 (-)
G1560339 NA non-coding upstream 167333 51381731 ~ 51455285 (-)
G1560406 NA non-coding upstream 269848 51484246 ~ 51485096 (-)
thsd7aa LOC106588717 other downstream 562898 50599944 ~ 50755992 (-)
G1559205 NA other downstream 589168 50623091 ~ 50623983 (-)
G1558916 NA other downstream 775692 50436997 ~ 50437459 (-)
LOC110496438 LOC106588686 other downstream 854121 50256021 ~ 50359132 (-)
LOC110496434 LOC106588680 other downstream 1179010 50023087 ~ 50034167 (-)
G1561167 NA other upstream 1034956 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 1142354 52352725 ~ 52396978 (-)
G1561279 NA other upstream 1430591 52644989 ~ 52647777 (-)

Expression


Co-expression Network