LOC110496464 (LOC106588701)


Basic Information

Item Value
gene id LOC110496464
gene name LOC106588701
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51230478 ~ 51234928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572391.2
CTGTCGTTCACAGACACCGGCAATAACGGGAAGGAGTCTATGGTTTTAGACAGTTTGGAGAAACTGCCCAGAGTTATATAGTTGTATTTTCTTTCCTGTCTTGTAGTTCAACGAAAGCAGACTCTTATACGTTTATTCTTCAAAATAATTCGGAGGAATTTAGGCCTATACCTTCGTTTTTGTTTTCTCAATGAAAGTAGGCTTTTCTAACTCAATGATGCATTTCGACCACTTTTAATTGATTTAATATATAGTGTATTATTTTACACATTTGTATTTCTCCACGAAACGGGGCTAAATCGAAGGTCCTGAACTAAATATGCTGAAGGAGATGACCAGTAGTTGTACACGCCGGAGTCCATGTGACGTCAGAGAGACAGGCGAGTTAAAAGCAGAGAGCGCATCAGGAGTGGCATGGTTGGTTTGTGGATCATAGATCACAACATCCCTGCCTCTTTGGACTGCAAATAATGTGTTTCACCAGACTGACTGGACGGTAAACATATTCATTAATTCAGCGCGTCACCAACCGTCAACCGACCTGGACACCTGAGCCAtccccaaaaaaacatcccaaGGGAGAATTGCTCTATAGCTGATATTTCTCTAATACCTCAATAGAAGAGCCGAAGAACAGCTGAAGCAGACTGTTCATTACAAACCAAATATTGGGTGCAGGCACGTTACCCGCAGTGGAAAGCAGTGTGTCTTGgtgttgatttgatttagtcaaaGTTACCTTTACGCACAGATCTAGCACACGTGTAACTTACCCAGATTCCTTCTTCggaactgaccttagatcagcgtCTACGGGCTACTTGATCCTGATGCATTGATGAGTGACAGTTGGACATTGTGCCGGTGCTTGATCCTTTAAAGTTTGCCGATATTCACTGATGTTTGATATCATGGCTTACCCGCAGCTAGGATACCCCTATTCACCCACACACCAGTTCCTCATGAGCACGAGCTCTTTGGCCAGCTGCTTCGAGCCTGGCGGAAGGTCTCTCCTGGACTCAGGTGTGACGCATCCCTCTCCCCAGCCTCTTCGGTGCCCAGCGTACGAGAGCAGGCTGCTCGGCTCCCCGGGCCAGGAGATACCAACCCCGGCTATAGGTCTGGGTGTGTATGGAGCTGGCTATGGAAAGAGCCAAGGGTACTATGGCACCTGCGGAGGCGACGCAACAGCTCTGTATGCCAGGGGAACCTTGGAGTCCAAAGATGGAGCGTCTGCACATGTGGGGGCCTCTCAAACCCCTGCATACTATCCATATGATTACGCATTTGGGCAGTATCCATATGACCGATATGGGTATGGGTCATCTGTGGACAGTGCCGCAGCACGGAGGAAGAACGCCACCAGGGAGACCACCAGCACTCTGAAGGCCTGGCTGCAGGAGCACCAGAAGAACCCGTATCCCACCAAGGGAGAGAAGATCATGCTGGCCATCATCACCAAGATGACACTTACACAGGTGTCCACGTGGTTTGCCAATGCACGGCGGAGGTTGAAGAAGGAGAACAAAGTCACATGGTCACCACGAGCCAATAAAAGCTCTGATGAGAGGGGCTGTGAAGATGACAGTGATGGTGTGGAGGGATCGCAAGAGGAGGAGCCAATCAAACGCGAGATAGATGTTGATGACTCTGTAACGGGGAGGTGTGTGGACCTAAAACAGAGTGACCTGGAGGACTTTGATCTGCTGGAGTCAGATGGTTCTGACTGCGACCCTAAACACCCGTTTCACACCAAAGACACCCCAGTACACACACCACCGGACCAGCGCCACCACCCCAAAGACCCTTCCAACAGCCCACTCACACATACCCCAGACACACTCCGACACGGGAATGAACGATTGCCACAGTCAGCAGATTGCCTCAAAAACACACCAGACCACGACCGAACAACCAACTCATTCTACACTCAACGGGACCTGCGAAGTACAGAGAGCAGCAAACCTAACATCTGGTCCATTGCACAAACTGCTGCTATCCAACCTGAGTTCCCTCCATGCATGCACACAGCCACCCCCAGCGAGGCCCTCTCCCCAGGGGGGTATCTGACCGAAGTACCCAACCTGAAGGTGAGAGCGGCTGAGCAGCAGGACTCGCCAGTGGCTACTCTGAGAGATTGGGTGGACGGGGTCTTCCACGACCCCCTGTTCAGACAGAGTTCCTTTAAACCTGTGCTGTCCAAGTCAGCCATGGACAGGGTGTGGATTGGGTTAAATGGATAGGCGATGGAAGGCAGAACTCTGTTGAACATGTTACCTCGTCTTTGCAGTATGTATCGACTTCcttagagagacatacagagactgCTATCCTCTCACCATTTGAATTAACTCAACCTGTGCAGAAGGCTATCTGAACTCCTTATGATACTACATGCTTCCATGCCTTTTTTTGTTTTAGAAAAATGTCAATTCGTGAATGCACATAAACGGCAGTATAATGACGTTATAATGACAAACATCAGAACAATGACGTTTTGCATAAATATCAAATTCAGACTACTTTCActttaaatgcatttttaaaTGAGTGGAAAAAGAGGGATTCAATCCCTTTAGACACTAAGAAAAGCAAAGTAGTAGCCTACCCATTCTCCCAGTAAAATGATCCCCCACATTCAACAGATTAAACAGTTCTGGATTGTtgaatcactaaaacacactgataATATGTTGTTTCATGATCTGGGAAGTGGAGACACAGAGTATCCTAGTGGTGTACACCTTTTCCAGACCTCTTATAATAATAACCTGAAGCATGACAGCACaatgtttcctcttaaaccaAGTAGtgcataatatacagtatgttttgcTTATGATCACATCTGATAGACGTATTTCACACTTCTTGCACTAAAGTCCGATTGCAGTTGATGAGTC

Function

NR:

description
iroquois-class homeodomain protein irx-4-A-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572391.2 True 2903 mRNA 0.47 6 51230478 51234928

Neighbor

gene id symbol gene type direction distance location
LOC110496463 LOC106588703 coding downstream 16080 51213151 ~ 51214398 (-)
LOC110496461 lpcat1 coding downstream 25246 51168766 ~ 51205232 (-)
LOC110496455 LOC106588704 coding downstream 62340 51155414 ~ 51168138 (-)
LOC110496456 abcf1 coding downstream 80587 51117661 ~ 51149891 (-)
LOC110496457 LOC106588707 coding downstream 115520 51101879 ~ 51114958 (-)
LOC110496466 LOC106588698 coding upstream 191812 51426740 ~ 51429376 (-)
LOC110496470 LOC106588694 coding upstream 251684 51486612 ~ 51503794 (-)
trak1b LOC106588779 coding upstream 944392 52179320 ~ 52240648 (-)
zgc:110239 LOC100846955 coding upstream 1017519 52252447 ~ 52259991 (-)
sytl1 LOC106588777 coding upstream 1026439 52261367 ~ 52269318 (-)
G1560253 NA non-coding downstream 18773 51211296 ~ 51211705 (-)
G1560251 NA non-coding downstream 22264 51208006 ~ 51208214 (-)
G1560249 NA non-coding downstream 23411 51206848 ~ 51207067 (-)
G1560222 NA non-coding downstream 92364 51132752 ~ 51138114 (-)
G1560286 NA non-coding upstream 49304 51284232 ~ 51284547 (-)
G1560299 NA non-coding upstream 68701 51303629 ~ 51303836 (-)
G1560300 NA non-coding upstream 71210 51306138 ~ 51306338 (-)
G1560339 NA non-coding upstream 146803 51381731 ~ 51455285 (-)
G1560406 NA non-coding upstream 249318 51484246 ~ 51485096 (-)
thsd7aa LOC106588717 other downstream 580225 50599944 ~ 50755992 (-)
G1559205 NA other downstream 606495 50623091 ~ 50623983 (-)
G1558916 NA other downstream 793019 50436997 ~ 50437459 (-)
LOC110496438 LOC106588686 other downstream 871448 50256021 ~ 50359132 (-)
G1561167 NA other upstream 1014426 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 1121824 52352725 ~ 52396978 (-)
G1561279 NA other upstream 1410061 52644989 ~ 52647777 (-)

Expression


Co-expression Network