LOC110496470 (LOC106588694)


Basic Information

Item Value
gene id LOC110496470
gene name LOC106588694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51486612 ~ 51503794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572397.2
TCTCACATGTGTGCGTCAGAAGATGAAACAGAACACGAGTGCAGTACCATTCGCATTTCAATCACCCtgttagcaaaatacatttagctaCACCAGAACGTTGCTTCGCAGGTTCATATTTAGAGTAGTGTGTGTTTCCAAAATGGGAAAGAGAAGTCGACTGAGAAAGAAGGAGCATCAAAATAATAGCAAGCCTGGTGGAAGAGATAACCGGGACAATGCTGGTTGGGGTGCAGGCTACGCTGACATCATCAAGGAGAACAAGCTGTTTGAGGCATACTACCAGGAGCTGGGCCTGGTGCCCGAGGGGGAGTTTGACCAGTTCATGGCGGCTATGAGAGAACCGCTGCCCGCCACAATCCGCATCACTGGATACAAGAGcCATGCCAAGGAGATCCTCCACTGTCTGAAGAACAAGTACTTCAAGGAGATCCAGGAGGTAGAGATTGACGGGCAGAAGATAGAGGCTCCTCAGCCTCTGAGCTGgtacccAGATGAGCTAGCATGGCACACCAACATGAGCAGGAAGATCCTGAGGAAGTCTCCTCTCCTGGAGAAGTTCCATCAGTTCCTGGTCAGCGAGACCGAGTCGGGTAACATCAGCAGACAGGAGGCTGTAAGTATGATCCCTCCTCTGCTGATGAAGATTGAGCCCCACCACAAGATTCTGGACATGTGTGCTGCTCCTGGATCTAAGACGGCGCAGTTGATTGAGATGCTCCATTCTGATATGGACGTACCCTTCCCAGagggctttgtgatagccaacGACGTGGACAACAAGCGTTGTTACCTGCTGGTGCACCAGGCTAAGAGACTGAACAGCCCCTGTATCATGGTGGTGAACCACGATGCCTCGTGCATCCCCAGACTACAGATAGACACGGAGGATGGACAGAAGGGCACACTGTTCTACGACCGCATCCTCTGCGACGTCCCCTGCAGtggagatggcaccatgaggaagAACATTGACGTGTGGAAGAAATGGACCACCAGTAACAGCCTGCATCTCCATggtctCCAGATCCGTATAGCAGTGCGTGGTGTGGAGCAGCTAGCTGTAGGAGGgaggatggtctactctacctgtTCACTCAACCCTATAGAGGACGAAGCTGTCATAGCAACGCTACTGGAGAAGAGTGAAGGTGCGTTAGAGTTAGCCGATGCGTCAGTTGATCTCCCAGGGTTAAAATGGATGCCTGGAATCACCAAATGGAAGTTGATGACTAAGGAGGGTCAGTGGTATAAGGACTGGTCCGAGGTGCCAGTCAACCGCCACACACAGATCAGACCCACCATGTTCCCtcccacagacacagagaaacTGGCCAATATGAAGTTGGAGAGATGTATGAGGATCCTGCCCCATCACCAGAACACGGGAGGCTTCTTTGTAGCTGTCCTGGTCAAGAAAGCCCCCATGCCCTGGAACAGAAGATTCCCCAAGTTGAGGAAGGAGCAGTCATCCAGCTCCTTGCCCCAGCCAGAGGACTCTCCAGTGGGCACCCCTCTTCCTGAGACGCCcttggaggatggagagagagatggagggaaggaggcaggagAGGACTCGCCCAAAGAGCCAGAGGCAGGCGATCAGGCCAAGGAACCCAACGTGTGTGGgcCTCCTCCCAATAAAAAGATGAAGAGGCATGGTTTTAAAGAAGACCCCTTTGTCTTCCTCACTGAAGACGACCCTGTCTTCCCCCCAATAGAGTCATTCTATGACCTGTCTCCAGACTTCCCAAAGATAAACGTTCTGACCAGAACCCACGAGGGGAAGAAGAGACATCTGTACATGGTCTCCAAGGAGCTACGCAACGTCATGCTCAACAACAGTGAGCGAATGAAggtgatcaACACAGGGGTAAAGGTGTGGTCTCGCAACAGCGACGGGGAGGAGTTTGGCTGTGCTTTCAGACTAGCCCAGGAGgGTATCTATACTCTGTTCCCCTACATCCGCTCCAGGATGATCACAGTGAGTGTCGAGGACATTAAGATTCTACTGACTCAGGAGAACCCGTACCTCAGCAAACTGGAGGAAGACGCTCACCAACAGGCCAAGAAGATGGGAATGGGCAGCATTGTGTTAAAATACCGGCCTGACAAAAGtaACCCCGATGGTCCTCAGTGTCCTATAGAGCTGTGTGGCTGGAGAGGCAAGACCTCCATCAGAGCCTTCGTGCCCCGCAACGAGAGGTTCCACTACCTCCGCATGCTGGGGGTCGAGGTATTCAGAGACAAACAGGGGCAGGGAcccagggaggaagagaaggaggtgaaggaggaggtgaaagagggggagacagagaatgGGAATAAAGATGTCAGCCCAAAACAGGAATTGAGAGGTGAAAATCGAGGTGACGAGCACctgaaaggagatgagagggagggaggaggggagaattTGACCAGCACCTGAGACGAGTAGAAGGAAATGTGTAACTTAATAGTCTTAACAAGTTTTCCTCTCTTTGGCTGCACTGATGTTAATGAACTGGAGGTCATCCACCATGTTGTCACCCATGTTTTTGCAGATGGAGAAGAGGAGTTGAGAAGCCACTTTAGACTAGTAAGATACACGGAGAAGGGAGGAAGTGGAGCTGTATGAGGTTGAGCAATGCTGGCCAGACAAGAGCTAGACCAAacatgagagagaagaggggtgtTGGGTAGCTCAGTAGTACTTCTAAACCACTGCCATAGCAGAATGGCCACCCCTCCTAGACAGGGCATGTGGACTCTTCCATGCTCCCCCAGACTTGGTGTGCTTCAATGCTTTAGtgacttttattttctattgccGGTTTTATTTTAACAAAACTCAACTCCACTGGCATAACATGGAGAGAGTGTTGTTTTTTTCTTATTGTGCATGTTTGAAAGTTTCTCTTAATGgccatttaatttttttatcattgtaagtaagaagaAAGGTGGAATTGATTAAAAGTATTAAATTCA
>XM_036953048.1
TCCCAGTGGGGCAATGACCCTATCAAAAATACTCACCCATCAACACCGGGGCTGTATTTCCTCGTCTTCCAAGGAGTTCCAGTCCCCGAGCTAACATGGTTGTCATTAGTCCAGTTAGAAAGCAAGTAATTAATCCCATAGGTGCTCGCCTTGTTGTCACTTTTCCTTCGGCCTGGATGGGTTGGGGTGCAGGCTACGCTGACATCATCAAGGAGAACAAGCTGTTTGAGGCATACTACCAGGAGCTGGGCCTGGTGCCCGAGGGGGAGTTTGACCAGTTCATGGCGGCTATGAGAGAACCGCTGCCCGCCACAATCCGCATCACTGGATACAAGAGcCATGCCAAGGAGATCCTCCACTGTCTGAAGAACAAGTACTTCAAGGAGATCCAGGAGGTAGAGATTGACGGGCAGAAGATAGAGGCTCCTCAGCCTCTGAGCTGgtacccAGATGAGCTAGCATGGCACACCAACATGAGCAGGAAGATCCTGAGGAAGTCTCCTCTCCTGGAGAAGTTCCATCAGTTCCTGGTCAGCGAGACCGAGTCGGGTAACATCAGCAGACAGGAGGCTGTAAGTATGATCCCTCCTCTGCTGATGAAGATTGAGCCCCACCACAAGATTCTGGACATGTGTGCTGCTCCTGGATCTAAGACGGCGCAGTTGATTGAGATGCTCCATTCTGATATGGACGTACCCTTCCCAGagggctttgtgatagccaacGACGTGGACAACAAGCGTTGTTACCTGCTGGTGCACCAGGCTAAGAGACTGAACAGCCCCTGTATCATGGTGGTGAACCACGATGCCTCGTGCATCCCCAGACTACAGATAGACACGGAGGATGGACAGAAGGGCACACTGTTCTACGACCGCATCCTCTGCGACGTCCCCTGCAGtggagatggcaccatgaggaagAACATTGACGTGTGGAAGAAATGGACCACCAGTAACAGCCTGCATCTCCATggtctCCAGATCCGTATAGCAGTGCGTGGTGTGGAGCAGCTAGCTGTAGGAGGgaggatggtctactctacctgtTCACTCAACCCTATAGAGGACGAAGCTGTCATAGCAACGCTACTGGAGAAGAGTGAAGGTGCGTTAGAGTTAGCCGATGCGTCAGTTGATCTCCCAGGGTTAAAATGGATGCCTGGAATCACCAAATGGAAGTTGATGACTAAGGAGGGTCAGTGGTATAAGGACTGGTCCGAGGTGCCAGTCAACCGCCACACACAGATCAGACCCACCATGTTCCCtcccacagacacagagaaacTGGCCAATATGAAGTTGGAGAGATGTATGAGGATCCTGCCCCATCACCAGAACACGGGAGGCTTCTTTGTAGCTGTCCTGGTCAAGAAAGCCCCCATGCCCTGGAACAGAAGATTCCCCAAGTTGAGGAAGGAGCAGTCATCCAGCTCCTTGCCCCAGCCAGAGGACTCTCCAGTGGGCACCCCTCTTCCTGAGACGCCcttggaggatggagagagagatggagggaaggaggcaggagAGGACTCGCCCAAAGAGCCAGAGGCAGGCGATCAGGCCAAGGAACCCAACGTGTGTGGgcCTCCTCCCAATAAAAAGATGAAGAGGCATGGTTTTAAAGAAGACCCCTTTGTCTTCCTCACTGAAGACGACCCTGTCTTCCCCCCAATAGAGTCATTCTATGACCTGTCTCCAGACTTCCCAAAGATAAACGTTCTGACCAGAACCCACGAGGGGAAGAAGAGACATCTGTACATGGTCTCCAAGGAGCTACGCAACGTCATGCTCAACAACAGTGAGCGAATGAAggtgatcaACACAGGGGTAAAGGTGTGGTCTCGCAACAGCGACGGGGAGGAGTTTGGCTGTGCTTTCAGACTAGCCCAGGAGgGTATCTATACTCTGTTCCCCTACATCCGCTCCAGGATGATCACAGTGAGTGTCGAGGACATTAAGATTCTACTGACTCAGGAGAACCCGTACCTCAGCAAACTGGAGGAAGACGCTCACCAACAGGCCAAGAAGATGGGAATGGGCAGCATTGTGTTAAAATACCGGCCTGACAAAAGtaACCCCGATGGTCCTCAGTGTCCTATAGAGCTGTGTGGCTGGAGAGGCAAGACCTCCATCAGAGCCTTCGTGCCCCGCAACGAGAGGTTCCACTACCTCCGCATGCTGGGGGTCGAGGTATTCAGAGACAAACAGGGGCAGGGAcccagggaggaagagaaggaggtgaaggaggaggtgaaagagggggagacagagaatgGGAATAAAGATGTCAGCCCAAAACAGGAATTGAGAGGTGAAAATCGAGGTGACGAGCACctgaaaggagatgagagggagggaggaggggagaattTGACCAGCACCTGAGACGAGTAGAAGGAAATGTGTAACTTAATAGTCTTAACAAGTTTTCCTCTCTTTGGCTGCACTGATGTTAATGAACTGGAGGTCATCCACCATGTTGTCACCCATGTTTTTGCAGATGGAGAAGAGGAGTTGAGAAGCCACTTTAGACTAGTAAGATACACGGAGAAGGGAGGAAGTGGAGCTGTATGAGGTTGAGCAATGCTGGCCAGACAAGAGCTAGACCAAacatgagagagaagaggggtgtTGGGTAGCTCAGTAGTACTTCTAAACCACTGCCATAGCAGAATGGCCACCCCTCCTAGACAGGGCATGTGGACTCTTCCATGCTCCCCCAGACTTGGTGTGCTTCAATGCTTTAGtgacttttattttctattgccGGTTTTATTTTAACAAAACTCAACTCCACTGGCATAACATGGAGAGAGTGTTGTTTTTTTCTTATTGTGCATGTTTGAAAGTTTCTCTTAATGgccatttaatttttttatcattgtaagtaagaagaAAGGTGGAATTGATTAAAAGTATTAAATTCA

Function

NR:

description
PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like isoform X1

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity molecular_function

KEGG:

id description
K15335 NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572397.2 False 2973 mRNA 0.50 19 51486612 51494390
XM_036953048.1 True 2929 mRNA 0.51 19 51486612 51503794

Neighbor

gene id symbol gene type direction distance location
LOC110496466 LOC106588698 coding downstream 57236 51426740 ~ 51429376 (-)
LOC110496464 LOC106588701 coding downstream 251684 51230478 ~ 51234928 (-)
LOC110496463 LOC106588703 coding downstream 272214 51213151 ~ 51214398 (-)
LOC110496461 lpcat1 coding downstream 281380 51168766 ~ 51205232 (-)
LOC110496455 LOC106588704 coding downstream 318474 51155414 ~ 51168138 (-)
trak1b LOC106588779 coding upstream 675526 52179320 ~ 52240648 (-)
zgc:110239 LOC100846955 coding upstream 748653 52252447 ~ 52259991 (-)
sytl1 LOC106588777 coding upstream 757573 52261367 ~ 52269318 (-)
LOC110519830 LOC106588776 coding upstream 767477 52271271 ~ 52281875 (-)
LOC110496488 LOC106588772 coding upstream 813343 52317137 ~ 52331561 (-)
G1560406 NA non-coding downstream 1516 51484246 ~ 51485096 (-)
G1560339 NA non-coding downstream 31327 51381731 ~ 51455285 (-)
G1560300 NA non-coding downstream 180274 51306138 ~ 51306338 (-)
G1560299 NA non-coding downstream 182776 51303629 ~ 51303836 (-)
G1560286 NA non-coding downstream 202065 51284232 ~ 51284547 (-)
G1560419 NA non-coding upstream 22092 51525886 ~ 51526519 (-)
G1560418 NA non-coding upstream 22822 51526616 ~ 51527950 (-)
G1560422 NA non-coding upstream 25139 51528933 ~ 51529135 (-)
G1560429 NA non-coding upstream 37268 51541062 ~ 51542056 (-)
G1560340 NA non-coding upstream 44615 51548409 ~ 51548856 (-)
thsd7aa LOC106588717 other downstream 836359 50599944 ~ 50755992 (-)
G1559205 NA other downstream 862629 50623091 ~ 50623983 (-)
G1558916 NA other downstream 1049153 50436997 ~ 50437459 (-)
G1561167 NA other upstream 745560 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 852958 52352725 ~ 52396978 (-)
G1561279 NA other upstream 1141195 52644989 ~ 52647777 (-)
G1562762 NA other upstream 2094856 53598650 ~ 53602694 (-)

Expression


Co-expression Network