LOC110496479


Basic Information

Item Value
gene id LOC110496479
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51951343 ~ 51955973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037497.1
GGCATTATAACTAGTACGAACAACCGATAATACTCTGGTTagaacacactcacacatcatTTCTTGCGATTCCAAGGGTTACGAAGACGTCACCGGTCTCCATGGCTTTGCTGTTGCCAAGATACGGCTCTCTAGGATGGGATGTTGTGGCAGGTGAGGTGAGGCGATAGGGACAGAGGTGACATAAGAGTGTCAGTGTTACATATTAAGGCGGGGTTGGCTCCACTTTAGACTATAAGAGAAGAATGTAGGCATCAGGGTTGAGGTCAAGTCCATTTCAAATGAGTCAGTTCAGCAAGTGAATTGCCAAAGTTTCTGCAACAAGATGCCTTTCTTTAGTAAAACACTGGTGCCAGCCTATTTGCAGTGCCagcctgtgtgtgttgtgtcagtgATTTGCATTGCTCATCATCCCTTACAGTAGCATAATTTGCATGGTGATACTTCAGCACCACCTTCAGGAATAGTTccgtcagtgtgtgtttgtgtgtgtgtggtaactaGACAAAATGGTTTGACTATGAttggaacagaaacacacacacacactgactgaactGGTGGTTACGATCAGAGACACTTTACACGTACGTGGTGGATtgagacgagagaggagagaattatAGATCTAGACTAGATCTGATTACAATTTCAATTTCTCAGaGGTcttaggagagaggaggggaccacTGCCTCTAAAATGAATCTCACTGGGGAACATGCATCCCCAATGTTGAGAGCCTAATCCAGCAGGAGAGACCAGACTCAACTGTACCGAGCTGTGCGTCCATGAAGAGTAACCAGTCTATGGATCCACTTactgtgtccagagagagaaccTCTTCTACTAAACTAAAGGCACATCAGAAGAGACCAGTCTCACCTGCACACAGCTGTGTGTCCGTGAAGAGTGACCAGTCTATAAATCATCCAATCATGTTCAAAGGTGGAGACTCTTCTACTAAACTACAAGTTCATCAGGAGAGATCAGAGTCACCTGTTCCCAGCTATGTGTCCATGAAGAGTCACCAGTCTATGGATCCACCTGTAATTTTCAGAGAAAGAGACTACTAAAACAAAGATGGGGCATGAAAATGTCTCAATTCAGTCATTGTCACTTGTTGCTTTTTTTCAACAGACAAGTGACTCTGGTCTATGGATCATCCAATCCTCTGAGTTGGAAACATTACTACTGGACAAAGGGTCGACCAGGAGAGACCAGACTTGGATGTTCTTCATGGGCAAGGAGAGGAGACCTGTCAAATCTTCCATGCACTACAGTCACAGAGAGCCAACACTGAGTCTGAGTCTATGGTGGCAGCTAACTCACCTAAGGGCTCTGAACCCAGCAGCAGTGGCTCTGGTCCAAACAGCATGCAGGAGCACTTAAGGAAGAATAAGGACATATTAGGGAAGCAGCACAGTCCCATTGATTACCTTAGTATTAGCTCAGAGAGTGGTGATAACCCTGGTTCCTTTATGGATGTCACACTGTCCAAGCGTGAGGGCTACACTGTTCCCCTGCAGTGCCACCAGCATGAGGCAGCCATGATCGGAGACGCCTTCCGGAGCCATGGCCAGGTCTGTAACTTTATAGTTGTCTACCAGAGTCAGCCGTCTGTTCCAGGAGAGGACGTGATTCTACTGACAGGGGTGGCCGGCAGTGGGAAGACCACTTTAGTGAGACGACTGCTGGTTCATGTCTGGATCAGGGCCTCAGACTCCCAGAAGCTAGAAGCTCTATCCTTCAGAGAGCTCAATCTACTCAGTGAGCCTCAGAGCCTGCTGGAGCTTCTCCTAACGCACTTCAGGCACCTGTTCTGGACAAATTTGTCAACTCCCAACATGGCCAGATCCTGCTCATCTTGGACGGGCTCAATGAGCTTCCCCCTTGACTTTGAGGGTCGCCTCGGCCGGcacctagcagctgacttagaactggtgtgGACCAGGGGAATctgactgtttaattaaaacaaagcatcgcgaaggcgcAAGGTGGGTGTTGATGCGATATGATTTCTGCCCAGTgttctgaatgtcaaagtgaagaaatatGGGTCTTTCAGTCAAGCATGAACATGTGAGGGTGGTTACACCAGACTCAATGATTTGCTGCGGGGCTATTGTAAACAAATCCTGaccttgacaggaagccaattTGAGAGTGATGGCTCAAACGCATCCTTGGCTTTGGCTGGGAGGGGGGGGAGTTAAGTCCTGTGAGACGGCTGATGAAAGTGTACTGCTGGCATCAGTTTGATCACAGAGCGGCTGTGGTGAAGCGTTTAAACACGCGTATCCCATATACTTAGCTAACTCTAAAACCGCAAAGGTTTGAATCGAACGCTGGCTTCGGCTGGACCCGCTAACAGTGGAGCACTAAATGGAGATGGAATGTGCTTAGCGGTTATGGACACTGCCAGGTCTCAGGTCCGCCAGGGTGCGAGACTCTACACATTCTATGTGTGAGCTGTCCTCCACACTCCTTGGTGCATGTAGTGGAGATGGCATGTGCCTTACCATTAACTGACACTACCAGGCCTCAGGCTTGCCTGAGTGTGGGACACCACATATTGTAGGTGAGGAGGTCTCCTCTACGCTCACTATACTCGAGGAGGAGACTAAACCCATTGGCCCCGCAGTGATAGGGCTTTGCATGAATCTGGCTCATGGCCTACGAAGTGTGGAGAGGTATCTCCAGATGTCTGGGGAGAGAGGCCTATATCTGATGTGGGTAGTACCATCCACGCCCATTGATTTGCTGTGGAACCATAAAATGGACGGAAGAAGCCCAGGTTCTCACTGGGCACGGATCACTGAATGTCAACTTGATGAAATTCAAGAGGAGCGTACCCACCtgtagtaatcctgctcagtacgacaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacccctctaagtcagaatcccccctaaacgtaacgATACCGTAGCGCCGCA
>XR_005037498.1
GGCATTATAACTAGTACGAACAACCGATAATACTCTGGTTagaacacactcacacatcatTTCTTGCGATTCCAAGGGTTACGAAGACGTCACCGGTCTCCATGGCTTTGCTGTTGCCAAGATACGGCTCTCTAGGATGGGATGTTGTGGCAGGTGAGGTGAGGCGATAGGGACAGAGGTGACATAAGAGTGTCAGTGTTACATATTAAGGCGGGGTTGGCTCCACTTTAGACTATAAGAGAAGAATGTAGGCATCAGGGTTGAGGTCAAGTCCATTTCAAATGAGTCAGTTCAGCAAGTGAATTGCCAAAGTTTCTGCAACAAGATGCCTTTCTTTAGTAAAACACTGGTGCCAGCCTATTTGCAGTGCCagcctgtgtgtgttgtgtcagtgATTTGCATTGCTCATCATCCCTTACAGTAGCATAATTTGCATGGTGATACTTCAGCACCACCTTCAGGAATAGTTccgtcagtgtgtgtttgtgtgtgtgtggtaactaGACAAAATGGTTTGACTATGAttggaacagaaacacacacacacactgactgaactGGTGGTTACGATCAGAGACACTTTACACGTACGTGGTGGATtgagacgagagaggagagaattatAGATCTAGACTAGATCTGATTACAATTTCAATTTCTCAGaGGTcttaggagagaggaggggaccacTGCCTCTAAAATGAATCTCACTGGGGAACATGCATCCCCAATGTTGAGAGCCTAATCCAGCAGGAGAGACCAGACTCAACTGTACCGAGCTGTGCGTCCATGAAGAGTAACCAGTCTATGGATCCACTTactgtgtccagagagagaaccTCTTCTACTAAACTAAAGGCACATCAGAAGAGACCAGTCTCACCTGCACACAGCTGTGTGTCCGTGAAGAGTGACCAGTCTATAAATCATCCAATCATGTTCAAAGGTGGAGACTCTTCTACTAAACTACAACAAGTGACTCTGGTCTATGGATCATCCAATCCTCTGAGTTGGAAACATTACTACTGGACAAAGGGTCGACCAGGAGAGACCAGACTTGGATGTTCTTCATGGGCAAGGAGAGGAGACCTGTCAAATCTTCCATGCACTACAGTCACAGAGAGCCAACACTGAGTCTGAGTCTATGGTGGCAGCTAACTCACCTAAGGGCTCTGAACCCAGCAGCAGTGGCTCTGGTCCAAACAGCATGCAGGAGCACTTAAGGAAGAATAAGGACATATTAGGGAAGCAGCACAGTCCCATTGATTACCTTAGTATTAGCTCAGAGAGTGGTGATAACCCTGGTTCCTTTATGGATGTCACACTGTCCAAGCGTGAGGGCTACACTGTTCCCCTGCAGTGCCACCAGCATGAGGCAGCCATGATCGGAGACGCCTTCCGGAGCCATGGCCAGGTCTGTAACTTTATAGTTGTCTACCAGAGTCAGCCGTCTGTTCCAGGAGAGGACGTGATTCTACTGACAGGGGTGGCCGGCAGTGGGAAGACCACTTTAGTGAGACGACTGCTGGTTCATGTCTGGATCAGGGCCTCAGACTCCCAGAAGCTAGAAGCTCTATCCTTCAGAGAGCTCAATCTACTCAGTGAGCCTCAGAGCCTGCTGGAGCTTCTCCTAACGCACTTCAGGCACCTGTTCTGGACAAATTTGTCAACTCCCAACATGGCCAGATCCTGCTCATCTTGGACGGGCTCAATGAGCTTCCCCCTTGACTTTGAGGGTCGCCTCGGCCGGcacctagcagctgacttagaactggtgtgGACCAGGGGAATctgactgtttaattaaaacaaagcatcgcgaaggcgcAAGGTGGGTGTTGATGCGATATGATTTCTGCCCAGTgttctgaatgtcaaagtgaagaaatatGGGTCTTTCAGTCAAGCATGAACATGTGAGGGTGGTTACACCAGACTCAATGATTTGCTGCGGGGCTATTGTAAACAAATCCTGaccttgacaggaagccaattTGAGAGTGATGGCTCAAACGCATCCTTGGCTTTGGCTGGGAGGGGGGGGAGTTAAGTCCTGTGAGACGGCTGATGAAAGTGTACTGCTGGCATCAGTTTGATCACAGAGCGGCTGTGGTGAAGCGTTTAAACACGCGTATCCCATATACTTAGCTAACTCTAAAACCGCAAAGGTTTGAATCGAACGCTGGCTTCGGCTGGACCCGCTAACAGTGGAGCACTAAATGGAGATGGAATGTGCTTAGCGGTTATGGACACTGCCAGGTCTCAGGTCCGCCAGGGTGCGAGACTCTACACATTCTATGTGTGAGCTGTCCTCCACACTCCTTGGTGCATGTAGTGGAGATGGCATGTGCCTTACCATTAACTGACACTACCAGGCCTCAGGCTTGCCTGAGTGTGGGACACCACATATTGTAGGTGAGGAGGTCTCCTCTACGCTCACTATACTCGAGGAGGAGACTAAACCCATTGGCCCCGCAGTGATAGGGCTTTGCATGAATCTGGCTCATGGCCTACGAAGTGTGGAGAGGTATCTCCAGATGTCTGGGGAGAGAGGCCTATATCTGATGTGGGTAGTACCATCCACGCCCATTGATTTGCTGTGGAACCATAAAATGGACGGAAGAAGCCCAGGTTCTCACTGGGCACGGATCACTGAATGTCAACTTGATGAAATTCAAGAGGAGCGTACCCACCtgtagtaatcctgctcagtacgacaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacccctctaagtcagaatcccccctaaacgtaacgATACCGTAGCGCCGCA
>XM_036953071.1
TCCTCGACATAACTAGTGTATTGTTTAGGTATGCATGTCATTCTCCAATTAGAAACTTATAAAATAAttagtgaaataaaataaagtgtAAAGATTGTATGCTCAGTGACACCACAACATCTACTTAAGGTCGACATAGATATTtattgtctctgtgtttgtccagAGTTCATCAGGAGAGATCAGAGTCACCTGTTCCCAGCTATGTGTCCATGAAGAGTCACCAGTCTATGGATCCACCTGTAATTTTCAGAGAAAGAGACTACTAAAACAAAGATGGGGCATGAAAATGTCTCAATTCAGTCATTGTCACTTGTTGCTTTTTTTCAACAGACAAGTGACTCTGGTCTATGGATCATCCAATCCTCTGAGTTGGAAACATTACTACTGGACAAAGGGTCGACCAGGAGAGACCAGACTTGGATGTTCTTCATGGGCAAGGAGAGGAGACCTGTCAAATCTTCCATGCACTACAGTCACAGAGAGCCAACACTGAGTCTGAGTCTATGGTGGCAGCTAACTCACCTAAGGGCTCTGAACCCAGCAGCAGTGGCTCTGGTCCAAACAGCATGCAGGAGCACTTAAGGAAGAATAAGGACATATTAGGGAAGCAGCACAGTCCCATTGATTACCTTAGTATTAGCTCAGAGAGTGGTGATAACCCTGGTTCCTTTATGGATGTCACACTGTCCAAGCGTGAGGGCTACACTGTTCCCCTGCAGTGCCACCAGCATGAGGCAGCCATGATCGGAGACGCCTTCCGGAGCCATGGCCAGGTCTGTAACTTTATAGTTGTCTACCAGAGTCAGCCGTCTGTTCCAGGAGAGGACGTGATTCTACTGACAGGGGTGGCCGGCAGTGGGAAGACCACTTTAGTGAGACGACTGCTGGTTCATGTCTGGATCAGGGCCTCAGACTCCCAGAAGCTAGAAGCTCTATCCTTCAGAGAGCTCAATCTACTCAGTGAGCCTCAGAGCCTGCTGGAGCTTCTCCTAACGCACTTCAGGCACCTGTTCTGGACAAATTTGTCAACTCCCAACATGGCCAGATCCTGCTCATCTTGGACGGGCTCAATGAGCTTCCCCCTTGACTTTGAGGGTCGCCTCGGCCGGcacctagcagctgacttagaactggtgtgGACCAGGGGAATctgactgtttaattaaaacaaagcatcgcgaaggcgcAAGGTGGGTGTTGATGCGATATGATTTCTGCCCAGTgttctgaatgtcaaagtgaagaaatatGGGTCTTTCAGTCAAGCATGAACATGTGAGGGTGGTTACACCAGACTCAATGATTTGCTGCGGGGCTATTGTAAACAAATCCTGaccttgacaggaagccaattTGAGAGTGATGGCTCAAACGCATCCTTGGCTTTGGCTGGGAGGGGGGGGAGTTAAGTCCTGTGAGACGGCTGATGAAAGTGTACTGCTGGCATCAGTTTGATCACAGAGCGGCTGTGGTGAAGCGTTTAAACACGCGTATCCCATATACTTAGCTAACTCTAAAACCGCAAAGGTTTGAATCGAACGCTGGCTTCGGCTGGACCCGCTAACAGTGGAGCACTAAATGGAGATGGAATGTGCTTAGCGGTTATGGACACTGCCAGGTCTCAGGTCCGCCAGGGTGCGAGACTCTACACATTCTATGTGTGAGCTGTCCTCCACACTCCTTGGTGCATGTAGTGGAGATGGCATGTGCCTTACCATTAACTGACACTACCAGGCCTCAGGCTTGCCTGAGTGTGGGACACCACATATTGTAGGTGAGGAGGTCTCCTCTACGCTCACTATACTCGAGGAGGAGACTAAACCCATTGGCCCCGCAGTGATAGGGCTTTGCATGAATCTGGCTCATGGCCTACGAAGTGTGGAGAGGTATCTCCAGATGTCTGGGGAGAGAGGCCTATATCTGATGTGGGTAGTACCATCCACGCCCATTGATTTGCTGTGGAACCATAAAATGGACGGAAGAAGCCCAGGTTCTCACTGGGCACGGATCACTGAATGTCAACTTGATGAAATTCAAGAGGAGCGTACCCACCtgtagtaatcctgctcagtacgacaggaaccgcaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgcgaagctaccatctgtgggattatgactgaacccctctaagtcagaatcccccctaaacgtaacgATACCGTAGCGCCGCA

Function

NR:

description
uncharacterized protein LOC110496479

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037497.1 False 3021 mRNA 0.49 6 51951343 51955973
XR_005037498.1 False 2854 mRNA 0.49 6 51951343 51955973
XM_036953071.1 True 2216 mRNA 0.49 2 51953611 51955973

Neighbor

gene id symbol gene type direction distance location
LOC110496477 snrk coding upstream 1919 51917835 ~ 51949424 (+)
rpl14 rl14 coding upstream 37429 51910981 ~ 51913914 (+)
LOC110496474 LOC106588785 coding upstream 81811 51819929 ~ 51869532 (+)
LOC110496473 LOC106570344 coding upstream 161879 51667438 ~ 51789464 (+)
LOC110496472 LOC106588693 coding upstream 309321 51548393 ~ 51642022 (+)
LOC118940997 NA coding downstream 18064 51974037 ~ 51975401 (+)
LOC110496480 LOC106588725 coding downstream 20294 51976267 ~ 51981985 (+)
topaz1 topaz1 coding downstream 47068 52003041 ~ 52020359 (+)
LOC110496482 LOC106588780 coding downstream 80515 52036488 ~ 52083470 (+)
cck-n cck-n coding downstream 199148 52155121 ~ 52160754 (+)
G1559729 NA non-coding upstream 353953 51593546 ~ 51597390 (+)
G1559738 NA non-coding upstream 406716 51544377 ~ 51544627 (+)
G1559515 NA non-coding upstream 448930 51450144 ~ 51502413 (+)
G1559638 NA non-coding upstream 587278 51362182 ~ 51364065 (+)
G1559938 NA non-coding downstream 4979 51960952 ~ 51962200 (+)
G1559951 NA non-coding downstream 34656 51990629 ~ 51991578 (+)
G1560829 NA non-coding downstream 214549 52170522 ~ 52170898 (+)
G1560830 NA non-coding downstream 215027 52171000 ~ 52171319 (+)
G1560831 NA non-coding downstream 215795 52171768 ~ 52171972 (+)
G1559041 thsd7a other upstream 1315777 50633743 ~ 50635566 (+)
G1558443 NA other upstream 1731216 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2190377 49760428 ~ 49760966 (+)
G1557717 NA other upstream 2405534 49545549 ~ 49545809 (+)
G1556127 NA other upstream 3838691 48074636 ~ 48112652 (+)
G1560811 LOC100846955 other downstream 300663 52256636 ~ 52257530 (+)
G1560911 NA other downstream 399324 52355297 ~ 52355835 (+)
G1560957 NA other downstream 485173 52441146 ~ 52441941 (+)
snrpd1 snrpd1 other downstream 1219749 53175661 ~ 53178938 (+)

Expression


Co-expression Network