cck-n (cck-n)


Basic Information

Item Value
gene id cck-n
gene name cck-n
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52155121 ~ 52160754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124611.1
ctctctcaaaCACTCCTCCAACACAAGGACTCTCTTTCCTCAAGatgacggcggggttgtgtgtgtgtgttctgttggtGGTCCTGTCCACTAGCTGTTTGGGACGACCCCagtcctctccccccctccaagAGGGCGACCCTGCCATGCCCCCTTCCTCTGAAGCACGTCTTGAAGCCTACGCCCACTTCCTCTCCAAGCCACGCCTCAGACAGACACGCTCCGCCCCTTTGGACAATACCGTACCATATACGGCAGAAGAAGACGGAGACTCCAGAGCCAACCTCAGTGAATTGTTGGCTAGACTCATCTCTTCACGgaagggttCTCTCCGTAAGAACTCAACAGTGAACAGCAGAGCTAGCGGTCTCAGTGCTAACCATCGGATAAAAGACCGAGACTACAATGGGTGGATGGACTTCGGCCGCCGCAGTGCAGAAGAGTACGAGTACTCCTTGTAAAAAAGTAGTCACTCTCTACAAGAAAACAACAAACTCAGTCAATGTCCCCCGATAAGAGTATATTTATTCTGTATTTGTTTGTAAACACTACATGATGCAATATATACATATGCCACATTTTTCAGGAAATCTTTAAAGTTCTGGTTTTCTTTCCtggtgttctgtctgtttatggTTTTGGAGGGAATTGAATGGAATGGAAAAAGGTCAGGTGTTAATGGAAAAATATATATGATGTCATGAGATTAACTTGGATCAATAAAAGTTAAGAATG

Function

NR:

description
cholecystokinin-like isoform X2

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05226 CCK; cholecystokinin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124611.1 True 735 mRNA 0.46 4 52155121 52160754

Neighbor

gene id symbol gene type direction distance location
LOC110496482 LOC106588780 coding upstream 71651 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 134762 52003041 ~ 52020359 (+)
LOC110496480 LOC106588725 coding upstream 173136 51976267 ~ 51981985 (+)
LOC118940997 NA coding upstream 179720 51974037 ~ 51975401 (+)
LOC110496479 NA coding upstream 199148 51951343 ~ 51955973 (+)
si:dkey-166k12.1 LOC106588778 coding downstream 74643 52235397 ~ 52245444 (+)
LOC110496487 LOC106588732 coding downstream 133914 52294668 ~ 52297220 (+)
LOC110496490 NA coding downstream 179527 52340281 ~ 52345668 (+)
zcchc17 zcchc17 coding downstream 402776 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 439631 52600385 ~ 52606655 (+)
G1559951 NA non-coding upstream 163543 51990629 ~ 51991578 (+)
G1559938 NA non-coding upstream 192921 51960952 ~ 51962200 (+)
G1559729 NA non-coding upstream 557731 51593546 ~ 51597390 (+)
LOC110496472 LOC106588693 non-coding upstream 606288 51548393 ~ 51642022 (+)
G1559738 NA non-coding upstream 610494 51544377 ~ 51544627 (+)
G1560829 NA non-coding downstream 9768 52170522 ~ 52170898 (+)
G1560830 NA non-coding downstream 10246 52171000 ~ 52171319 (+)
G1560831 NA non-coding downstream 11014 52171768 ~ 52171972 (+)
G1560832 NA non-coding downstream 11401 52172155 ~ 52172573 (+)
G1560836 NA non-coding downstream 18578 52179332 ~ 52240688 (+)
G1559041 thsd7a other upstream 1519555 50633743 ~ 50635566 (+)
G1558443 NA other upstream 1934994 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2394155 49760428 ~ 49760966 (+)
G1557717 NA other upstream 2609312 49545549 ~ 49545809 (+)
G1560811 LOC100846955 other downstream 95882 52256636 ~ 52257530 (+)
G1560911 NA other downstream 194543 52355297 ~ 52355835 (+)
G1560957 NA other downstream 280392 52441146 ~ 52441941 (+)
snrpd1 snrpd1 other downstream 1014968 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 1117036 53277790 ~ 53288465 (+)

Expression


Co-expression Network