si:dkey-166k12.1 (LOC106588778)


Basic Information

Item Value
gene id si:dkey-166k12.1
gene name LOC106588778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52235397 ~ 52245444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572415.2
TCCACAAAAACACGGTGTTTATAACATCCACCTTCGGGGACGCGCACTGGACACTGGCTTTCACTGATGTATATTATTTTGCTGGACAATGTTCTGCGTAATTTGTGCGTTTGGTTGACTGTTTATCTGATTTCCAGTTGACTTATGATTTGAGGTGCATGTCAATACAGAAGATTGTTGTGCCGTTCTGGGTTTCGGAAGGGCTTGTTCAGAGGGACTCTGCCCGAAGCGCGATTCTGACGATTTATTTTATTGACGATTTTCTGAGAGAAGGCTTTGATTGTAATATACAACTGTGCACACTTGGATGTGAGAAACTATTATGTATAGTTGTCTACCATATGCATTGTAAGGGAAGATAGTCTACTGCAACTGATTTtcgacagaggaggaggaggtggggtggATTGTTAGATAAGAGGGATTTTTAAGAGGGGTTTTGTAAGGGGCTCAGCCAGGACATGTGAGAAGAACAAAACTATGCCCCTCACTGACGGACGAGAGCGGACAACGGACATACGCACCTGTCTGTCCACTGTCACTCCGTGGCACATGGTGGTGTGTTTTTGTCTGGTCTTCTCTCTAGGAGACATATGATTTACAGCCTTTTGCTGGCTATAGTGATTCGGTTTATTCCAAATATATTCCATTTTTAAATGTGTATCTATTCAGATCACTTTAGTCTCAGATAAAATCTATTTTGCAAACGAGACTTGGTCGAATAGCAGCAGTAGGCCTAATGTCTCATTGAGATTTAAATAATCCCTTCTTCAAAGGAGCATTGAATTGATTGAAAATGAATTTCGACCAGATTCTAACAGCTGTAGGAGGGTTTGGAAAGTACCAGAAGATTTTGTATGTGTGGATCTGTCTGCCTCAGATACTACTGGGTTTTCATATGATGGCCAGCATCTTTACCGGGGCTACACCAGGACATCGCTGCCGGGACAGCCCGAGCTCAGGCCCCGGTAATAACGTTCATAATGGTAGCCTGGCTTTGACTTCAGCCGTTACTGTTACTGCAAAGCTGAACCTCAGCATCCCGGTGGATCCACAGGTGGACGACTCCTGCGTCCTCGTGGACATTCTAACAGAGAACGGGACTGTGCGCGCGCCTTGCGAGAACGGATGGGTGTACAGCCAGGATATTTATCAAAGCACTACCATCACTGAGtgggACTTGGTGTGTGACAAGGCATGGCTCAACAGTCTGGGGTCTTCTGTCTACATGTTGGGTCTGCTGGTGGGAGCAGTCATCTTTGGAGCTATGGCAGACAGgatTGGTAGGAGGAATGCCCTGCTCCTCTCCCTAGCACTACAGACAGTGTTTGGAGTGGCTGGGGCTTTCGCTCCAAACTTCCCTGTGTATGTCCTGCTGCGATTTATTCTGGGGACTACTATCTCTGGAGTCATCATCAACGCCTTTgtactggGTACAGAGTGGACGTGTGTCCAGCGTCGTATGTTAGCTGGTGTCTTCACTGACTACTTCTTTGGCCTGGGCTACATGCTAATAGCTGGACTAGCCTACCTCATACGAGACTGGAGAAAACTACAgctggctatatctgttcctggctTTCTGTTCATCTTCTATATatgggTGCTTCCTCAGTCAGCTAGGTGGTTGCTAGCCaatgacaggagagaggaggccaTTGTTCTACTACGCAAAGCTGCTACAGTCAACGGACGTGTATTACCACCTACTATACAGgtGGACTGGTGTGACATGGAAGGTAGAAGGAGTCACTCAGCTGCAGATCTTGTTAGAACACCCCAGATGAGGAAAAGAGCTCTTATCCTTTTCTATGTCTGgttTGTGAATGTATTGGTATATTATGGACTGTCTCTAGGTGTATCTAAACTGGGCTCAGACCTCTACCTGACTCAGTTCATCTTTGGATTGGTGGAGATCCCTGCCAGGTCATTGGTTCTCCTGTTCCTCCCTTGGAGCAGACGCCTATCCCAGAGTGTCTTTCTGGCCCTGGGGGGCGTGGCCTGTCTGCTCACTCTAACTGTacctacagaccatcCCAACCTGATAACAGGTCTAGCCATGGTAGGAAAGTTTGGTATCACTGCTTCCTTTGCCGTTATCTACGTTTATACAGCTGAGATCTTCCCTACTGTACTACggcaGACAGGAATAGGGGTGTCCAGTATGTTTGCCCGTGTAGGGGGTGTGTTAGCCCCCCTTATCAACATGCTCCATACCAGAAACCCCTCTCTACCCATGCTCATCTTTGGCTGCACCCCCCTGCTTGGTGCAGTTCTCGCCCTGGCACTGCCAGAGACTGCCAACAGACCACTACCGGATACCGTAGAAGACGCAGAGAACTGGGATACTAGGTTTCCTCCAAAGAAGGGCCAAGGAGAGGACATTATCCAATTAGCAAGCAGCACAGAGGGGCAGGAACTACAGCGCCTAGCAACAGAGTCTTGACCACTCACACACATCCCAGcaatccacacacaaacacaaatacagttcaagtcagaagtttacatacaccttaggcaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaatattccctgtttta

Function

NR:

description
organic cation transporter protein-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572415.2 True 2588 mRNA 0.47 10 52235397 52245444

Neighbor

gene id symbol gene type direction distance location
cck-n cck-n coding upstream 74643 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 151927 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 215038 52003041 ~ 52020359 (+)
LOC110496480 LOC106588725 coding upstream 253412 51976267 ~ 51981985 (+)
LOC118940997 NA coding upstream 259996 51974037 ~ 51975401 (+)
LOC110496487 LOC106588732 coding downstream 49224 52294668 ~ 52297220 (+)
LOC110496490 NA coding downstream 94837 52340281 ~ 52345668 (+)
zcchc17 zcchc17 coding downstream 318086 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 354941 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 395793 52641237 ~ 52644819 (+)
G1560832 NA non-coding upstream 62824 52172155 ~ 52172573 (+)
G1560831 NA non-coding upstream 63425 52171768 ~ 52171972 (+)
G1560830 NA non-coding upstream 64078 52171000 ~ 52171319 (+)
G1560829 NA non-coding upstream 64499 52170522 ~ 52170898 (+)
G1559951 NA non-coding upstream 243819 51990629 ~ 51991578 (+)
G1560813 NA non-coding downstream 1408 52246852 ~ 52247826 (+)
G1560869 NA non-coding downstream 2665 52248109 ~ 52248605 (+)
G1560810 LOC100846955 non-coding downstream 6931 52252375 ~ 52253846 (+)
G1560812 NA non-coding downstream 15337 52260781 ~ 52261180 (+)
G1560877 NA non-coding downstream 17956 52263400 ~ 52265153 (+)
G1559041 thsd7a other upstream 1599831 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2015270 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2474431 49760428 ~ 49760966 (+)
G1557717 NA other upstream 2689588 49545549 ~ 49545809 (+)
G1560811 LOC100846955 other downstream 11192 52256636 ~ 52257530 (+)
G1560911 NA other downstream 109853 52355297 ~ 52355835 (+)
G1560957 NA other downstream 195702 52441146 ~ 52441941 (+)
snrpd1 snrpd1 other downstream 930278 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 1032346 53277790 ~ 53288465 (+)

Expression


Co-expression Network