LOC110496487 (LOC106588732)


Basic Information

Item Value
gene id LOC110496487
gene name LOC106588732
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52294668 ~ 52297220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572419.2
TGTTCACCACCGGAGAAACGGAGACAACCTATTCGCAAGGAGGATATGTTATTACTCTGATGGGGACAGACAAGCCTTACTGAGATATTACCGACCATCGATATACCAGGAGACAAGCTGGACACAGACAGCATCACGGCATCACAGTTTCCTGGATTCTCTGTCAACAGAGCTGATTTGAAAGAATCGTGATCAAGGTCTTGTTAGAAGgtgTCGTGTGTGTGACTCATGATGACCCAGAATGACTCGGACATCTGGTTCGAGGAGTCTTCAGGTTCAGGGATGACTTCGCCTCTTTCCCAGCTGGACCAATCAGATCCCACAACCATTCCTGAGGCCTCTCCTCTCAGCCTATGGGGAGTGGCACTGTGCGTCTCCGGAACCCTCATTGTATCCGAGAACACCATCGTAGTGGCGGCCATCTTGGCCACGCCTTCTCTCCGTGCTCCTGTCTTCCTGCTCCTCGCCAGCCTGGCATTGGCCGACCTGCTGGCGGGCGTGGCCTTGATCCTgcacttcctcttcctgttctgTGTGGAGCCCACGGATTGGTCAGATCTGATGACGTCAGGGCTTCTGGCGACATCACTGACCGCCTCCCTCCTCAGCCTGATGGGCGTGGCGCTGGACCGTTACCTGTCGCTAAGCCACGCCCTCACCTACGGCTCCCGCCACTCGCGTCGATGCGCCGCTGGTCTGCTGGCACTCGTCTGGCTGGGGTCATGTCTGATCGGCTTGGGCCCAATGCTGGGGTGGCACTGCCTCAATGACATCACATCCTGTTCCGTGGCGCGACCCCTGACCCGGACGTACCTGTCGTTGCTTTGTGGCGGCTTCCTGCTGGTCATCATGGTAACGCTGCAGCTATACACCGGGATCTGCCGCGTCGCTAGGCGGCACGCCCATGCCATTGCCACGCAGAGGCACTTCCTGCCTGACGACCAATCGTACAACAGCAAGCACGGGGGCCGGGGGAAGGGCCTATCTCGGCTGTTGTTAGTCCTCGGAGTGTTTGTCAGCTTCTGGACGCCCTTCGCCCTTTACGGTTTGCTGGGCGACGCATCTAGCTCGCCCCTGTATACGTATGCTACGTTAGTGCCGGCTGCAGGGAACTCTCTGCTCAACCCTCTGCTGTATAGCCTGAGGAACAGAGACATACGCAAGGTGCTGCTGCATGCCTGCtgtcctcacagacacacacacaacacacacaggccTGTTGACGTGTAGGAtggagacacacatagacacacacatactgtcccaTATAACTGTAACGCATACAAATAGCACATCCTCATCATCACTTGCACATCAGATAAGAAGCAATCAGAATGTACTGTTCCAGAAGGCAGCCATCTTGGAGTCAGCTGGAATAAGCTCTGTCATTGGCTGTGAGACCTGATGTACTGTATCATTTCATCATGTGCCTCATCCTCAACTAACATGTAGACAATCCACTCTGATGCAATCACAGAGGTGCAACTATCGTAATTCATCTGGGTCCTTGGTGGGACTATACTATGCTGCTGTCGGTGATCCAAAGGTCAAATGCAGAGTAACTTGAAGGACTCTTAAACTCTTATAAAGTGTTTGCACTAATACTGTAAAACGCACCTCAACTATCTCTGAAAAGGTTTGAGTTTGCcaatgttttttaaaataaaatgtatgaatGTTGTCTTTTTCTACTTCCTAAATAAAAACTACTTTATTTTGTACTAAAA
>TU1785733
ACGCAGAGGCACTTCCTGCCTGACGACCAATCGTACAACAGCAAGCACGGGGGCCGGGGGAAGGGCCTATCTCGGCTGTTGTTAGTCCTCGGAGTGTTTGTCAGCTTCTGGACGCCCTTCGCCCTTTACGGTTTGCTGGGCGACGCATCTAGCTCGCCCCTGTATACGTATGCTACGTTAGTGCCGGCTGCAGGGAACTCTCTGCTCAACCCTCTGCTGTATAGCCTGAGGAACAGAGACATACGCAAGGTGCTGCTGCATGCCTGCtgtcctcacagacacacacacaacacacacaggccTGTTGACGTGTAGGAtggagacacacatagacacacacatactgtcccaTATAACTGTAACGCATACAAATAGCACATCCTCATCATCACTTGCACATCAGATAAGAAGCAATCAGAATGTACTGTTCCAGAAGGCAGCCATCTTGGAGTCAGCTGGAATAAGCTCTGTCATTGGCTGTGAGACCTGATGTACTGTATCATTTCATCATGTGCCTCATCCTCAACTAACATGTAGACAATCCACTCTGATGCAATCACAGAGGTGCAACTATCGTAATTCATCTGGGTCCTTGGTGGGACTATACTATGCTGCTGTCGGTGA

Function

NR:

description
G-protein coupled receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572419.2 False 1727 mRNA 0.52 2 52294668 52297220
TU1785733 True 624 lncRNA 0.51 1 52296409 52297032

Neighbor

gene id symbol gene type direction distance location
si:dkey-166k12.1 LOC106588778 coding upstream 49224 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 133914 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 211198 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 274309 52003041 ~ 52020359 (+)
LOC110496480 LOC106588725 coding upstream 312683 51976267 ~ 51981985 (+)
LOC110496490 NA coding downstream 43061 52340281 ~ 52345668 (+)
zcchc17 zcchc17 coding downstream 266310 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 303165 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 344017 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 565460 52862680 ~ 52892459 (+)
G1560877 NA non-coding upstream 29515 52263400 ~ 52265153 (+)
G1560812 NA non-coding upstream 33488 52260781 ~ 52261180 (+)
G1560810 LOC100846955 non-coding upstream 40822 52252375 ~ 52253846 (+)
G1560869 NA non-coding upstream 46063 52248109 ~ 52248605 (+)
G1560813 NA non-coding upstream 46842 52246852 ~ 52247826 (+)
G1560896 NA non-coding downstream 3139 52300359 ~ 52300575 (+)
G1560904 NA non-coding downstream 11405 52308625 ~ 52308953 (+)
G1560871 NA non-coding downstream 19923 52317143 ~ 52318321 (+)
G1560876 LOC106588772 non-coding downstream 25162 52322382 ~ 52331632 (+)
G1560870 LOC106588771 non-coding downstream 103364 52400584 ~ 52402286 (+)
G1560811 LOC100846955 other upstream 37138 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1659102 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2074541 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2533702 49760428 ~ 49760966 (+)
G1560911 NA other downstream 58077 52355297 ~ 52355835 (+)
G1560957 NA other downstream 143926 52441146 ~ 52441941 (+)
snrpd1 snrpd1 other downstream 878502 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 980570 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1421149 53713836 ~ 53730416 (+)

Expression


Co-expression Network