LOC110496490


Basic Information

Item Value
gene id LOC110496490
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52340281 ~ 52345668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469561.2
ggattaaatatcaggaattgtgaaaagctgagtttaaatgtatttggctaaggtgtatgtaaatttccgacttcaactgtgtatattgAGGACTAATCTGATTAAGGTGAGTTGTTTATTTAGCCAAATAATAACTACATTTTCGATTTGTGCGTGATGCTTTTAAATATTGTGGCCATTGCATCGGCACCAAGCTAACTGCGTTTTGCACTCGCTCTGCAACCAGTTCATTTTAGCAGTCTTGTAAGACTGCTCCTAGAACATGACAACATAATATAGTGACTAGCTGGAATTATGAGTGTATTTTACTGGACTAATTAGGCCATGTCCATATTTTGGGACAGTGAATATGAGTTGAATAGTCTGTTTGCTGTAGTTTGGGACCTGCTTCAAGTAGGTTGTGGTCATGATCCAATATTTTCAAAATATACTTTGAAATGATCATTGCTAAGTAAAGGAGTATTGGTGAAAATGTTTGTAGTCGTCCTTATATCATGTGTCATGATTGAAATACAAATGTAATGCTTTTCATCCATGCTGGCCTTATCTCCTAACTGCTTTCAGACCTAGTCATGCTGATCAGGGTGAAATTCAATGGTGAACAAAAATATGTCAAGATCATTAACCTGACACTTGAAAACCTTTTTGATtggaaataaatgtattgttttcATACCAGTCAGTCTGATTACTCATACCATTACAATTGCAATTCTAATTGTAGGTTGTTGTCTTAATGTTTGTCACAGTTTTCCTGAAATTTGAGATCCCACTTACTAGTTTATCAGAGACAAAGCTGTATGATGGGTCTGGAACTGAAGTTGATGGGGATGTGTTTGAGAAGGAAGACAGATCTGGGTGTTTTCAAGCTCACACTGAACAATGATGCTAAAGGTATGTGCTGGTTTTCAAGTCTTTGGTTACCTGTGGCATCACTTTCAATATAACCATACATTTGACATGCCTGTATTGTTGTCTTTGTGTATTTCATTATCTTCCCTGATGAGTCCTGTCTCTGCCAGTTCTGTGATGGGTGGTTCAGACCATGAGTCGGTTGATACAATCATTTTGAGTGAAGTGTCAAAGATCTGATGACGAAGCAAAAAATCTAATAGAGAGCATACTGAAGAAAAAGCCAGGTGGAGAGGTTGTCATCAAGGAATACTCCAAAACTAAAAGCCTGACTGACTGCACCAGACGAAAGATGATCAACAATTTTGTTTCGACGATGACAGAGACTCATGGTCGAGTGTAAAGGAAGGATTCATAATGAAAATGGTTGAGTGTTACTTGCTCCCATATCTGCTGAATGTTAAAAATGACTTCTGTATCAGTATCTCAGTCACATAATTGGTTAGGCTACTGCTGACCATCCACTGCTATTGGTAGAAGACTGCTCTTGTATCAAATTCAATGGGCATGATACCGATTCAAAATTCACTCCTGATATTTAGCTGACTGGGGACCAATGCTGCTTGTGGAGATTCTGATTGCCGCCTAAACATAACATTATATTCTTGTCAGGACATCACCACCGCGTAGTGTGAGAGAAACGTTTGCACAAGGCATCGTTCCCATACCTGAAGGATCCCTGCACTGAAAATGGATATGCAAGTATACATTATGACTGCAAATGGGACTTGGTTATTTGTTTTTTCTTTCAAGATTAGTAACCATTTTCATAAGGAACATTATTACGACCCTAATAGTGGAGAAGGGTACCTCTCGTATAGAATCAAAACCATTCAGAGGAATTTGGTTTCATCGGAGAAACGGCCCACTCAACTATACTCTGGAGGGCCAACTGCTGAGAGGGAGTCCAGTCCATCCACTTTGGCTACCCTGAGTGAAGACCAGTGCCGAGAGGCCATTTCTCTTATGAAGCATTCTTCTGATGAAGAAACAGAAGATGAGATTGACCTTTGAGTACAGGAACATGACCCACAAAATGCTCCACCATCCTAACCGAATTTCCACGCTTCCTGGATGTGAAGGGCTTGGTAAGACTTGTTTCAGATTGAACAGGATTTTGTGCTGCTGTTTGGAGAGGGAACATCAGCCAAGGTTTTGGAGAGGTGGCCAACTACATTCAAGCAAAAGATCATCATGCTAAGCAAGGCCCTAAGCAAGGCCACTCAGGCAGCTGAACTTCAGGAGCTGATCCAGATGGCAGAATCTGCAGTTGATGAAGGAACTGACATTAATGCTTACGGATCTCTTTGATTAGGATGGGAAGGTGACCtttcctccatccttctcctgcTCCATTTGATTCCTCCTTCATCACAAGGCTGCAAAAGACCAGGCAAGATGTCTGCATCTCAAGCTGAACAGCATCTTGTGATATTCCAAAAGGCAGGAACCAGTATCCAGGAGCACCTTGATGCGATTGACCAGAGCCGCCAACCATGTCGTCTTGCAGTCGGGACCAGGAAGAGCAGCATCCATGCTTACATCATCATCCTGGACAAGAGCGCCTTGCAAGTCAACGAGCTCCCTTGGTGCTTCGATGAGCTTTTCAAGACTCACTTTGTTTTTGGTACTGCTTACAATACAATGCTGCTCAACATGTACACCTTCATACAGACAACTGTGTACATCATAGACATTGGGAAGGTTAAGGAGACTCCAAGGGTTGCTGAGCTCAGAGCTAGACCTCTGCACTAATGCTGATATGTTTTGTTTGTACCAACTTGCTCGTAAGGCATCTCAAGTTGATGCATGGAATGTGCCCTGGTAGAACTCTTAGACTAAAATGTGGTCAAGCAGATTGTTGTCGTGTATTTGGTTGTCGTGTATTTTCAGACTTTAGGAAGCATTTGAACAGGGCACAATCCCGAGACTGTCAAATTTTGTTAAACGCTAACTTGAATGCTAATACAGCTGTTGATAATTAGCCAAGTAATGCTGATTTTCCTTCTAATTCTAGTTGTAACCATGTACCAATATCTAACAAGAACACACTTgatatgtgtgtgtctgctatTGCACAGCTGCAGGTATAGGTCAGACTGTAAATAGTTTTGTATCTTCCATGGAAGAAGCAGTTCAAGAGCTACAGGGTCAAGCTAATGCGACCGCTCTTACATGTATAATATCTTCAAAAGGATTTTTGTATAAAATAAGCACTTCGTTTTGATACTGAATTCAACAACGTGAAAGGATTTTCAATATCCTGAAAATAATGCTGTATTTTTCGGACAATGTGTGTGTCACAAATTGTCAGAAAAATACAGCATTATTTTCAGGAGAGTCCTTGGTGTTAGATTTGACAATAGAAGAAACAACACTACTGGAACTTATGATCAAATGGTCATAACTGATCAATTTTCTTACATTCCAATTCTCCAAACATTGCAGTTAATTTTGAAGACCCCAAATACAAGTGGCATGTTTAACTCGGGGCACAATTTTAAAATTGAGTTTACTTTGATTTGAAAGCTGGACTATATATGAAGAGACATCCTCTCTTTTCTAAAGAGTAAAGAGTTGAATTGAATGCATTTATGATGACTGACACTGCTAATCCATTGGGATCAAAAAAGTGAATTCACAAGTTGGGAGGTACATACTTTACTTTGAGAAATTTTACCCCAAAGTTTAATTCAATTTTGGTAAATATTCACGTATGTGCACTCTTCCATACCCAGGACCTTAAAACGTAGGGATTTGATTCCATTCTTGAGCAAATAGTTAGCGATTTGAAAGTGCTTGAGACTGAGGGTATTGAAGTTCCGGTTTTGTGGAATCATTTAGTGCTCGTTAATTGTTGCTGTTTTTGCCTCACTGAGAAAGTGTATTTTCAAACTGTGTTCTCTGAGGATGACCCAAGAGTGACTTTACGAACAAAACACATGCAACTCAGACCATTGTCAAACTATTCAGTCAAACCCAACACGATGTGAAGCATGCTTACTTATTGATCTCTCTCCAGTACTTCAATACTACAGACAGCTTTTCTGTTGATATAATGCATGACATTTTAGGAGTTGCACAATTTGAGGTAAAACTTGTTACAGTATATATAAGCCAACTTTGTGACTGCTAAAGATGTGTATGGTAGAGTTCATTCATTTAACTATGGCTATCGTCCACCTGCACTCAAATTGGATGATGGGAGCAATGATTTGGGTCTAAATGCTATTCAATCTTGGTGTCTTCTCAGTAATTTGCCATTGATATTTGGTGATCTGGTACAGAAATATGATAAATACTGGCAGCTGCTTCTGTTACTACTACAAATTGtaaatattgtgttttctcttatACTAACAGACGGCATGACTATCTATCTGAAGCACTTAATTGCTGAACATCATAGGCTTTTCAAGTGTTTGTTTCCTGATAGAAATCTGTTACCGAAACACCACTTCATGATACATTATCGTCGTTGTATAAGGAACATCGGGCCCATTCTTCATTCGTGGTGTATGCGCTACGAGGCAAAACATGATTTATTTAAAAAGCAACTGAAGAGTTTTAAGAATGTCACTATGACCTTAATCAAGAAACACAAATGACATGGCATATAACTGAGAAACCTTCATCCAGGATGGACTAGCTATAGGTCCAGGAAAGATGTCAAGGCTCAATCACCTGAAAGAAAGCCATGAGATTTCTGCCAAGTTGAATGTCTCAGTGCACACACGTTTTGTCAGTTAAATGGGTAAAGCCCCATGGTACAGAATATCGTCTTGATTTGGTCATATGTGGTGAAGTAGTCATTGAAATGCCACTATTTTACAAAATGAAGGCTATTCTGAAAGAGGAAAATGTTTTTTAGGTTGGGTCAGCTCTTGAAACCTTATGTTTTGATGATCATTTGCATGCATTCAAAGTTTTGAAGCAAAGTATTTCATGTAAATAACATGTTCCACAAACCTTTTCATTTGCTCAAGTCATATGGAGCAAGGGATTCTTTTGACTACATTCTACTGTCACTTGATAACAGTTTAAGCCAGGGCTGGGACTTGTGGTTTGGTCATAATAAACATATTT

Function

NR:

description
uncharacterized protein LOC101885398

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469561.2 True 4998 mRNA 0.39 5 52340281 52345668

Neighbor

gene id symbol gene type direction distance location
LOC110496487 LOC106588732 coding upstream 43061 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 94837 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 179527 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 256811 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 319922 52003041 ~ 52020359 (+)
zcchc17 zcchc17 coding downstream 217862 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 254717 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 295569 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 517012 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 560731 52906399 ~ 52918381 (+)
G1560876 LOC106588772 non-coding upstream 8649 52322382 ~ 52331632 (+)
G1560871 NA non-coding upstream 21960 52317143 ~ 52318321 (+)
G1560904 NA non-coding upstream 31328 52308625 ~ 52308953 (+)
G1560896 NA non-coding upstream 39706 52300359 ~ 52300575 (+)
G1560870 LOC106588771 non-coding downstream 54916 52400584 ~ 52402286 (+)
G1560947 NA non-coding downstream 82574 52428242 ~ 52432448 (+)
G1560957 NA non-coding downstream 95478 52441146 ~ 52441941 (+)
G1560932 NA non-coding downstream 127563 52473231 ~ 52474079 (+)
G1560930 NA non-coding downstream 128610 52474278 ~ 52477907 (+)
G1560811 LOC100846955 other upstream 82751 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1704715 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2120154 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2579315 49760428 ~ 49760966 (+)
G1560911 NA other downstream 9629 52355297 ~ 52355835 (+)
snrpd1 snrpd1 other downstream 830054 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 932122 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1372701 53713836 ~ 53730416 (+)

Expression


Co-expression Network