LOC110496491 (LOC106588724)


Basic Information

Item Value
gene id LOC110496491
gene name LOC106588724
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52352725 ~ 52396978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951070.1
gacagacaggcacATCTGGCGAGAAACGAGAGAGGCGAGATtgcactgtgtgtgagagagagacagagagagaaagggggatatcGCGGAGAGATAAAAACGGAAGAAAGATTTTGTTCTTTCCTTCCTTTTCTCCTAGAAACGTCTGTCCCACGCCTGTCTGCCACGGGATCGTTACCGCGGGGTTTGAGGAGTGTTCGCGTTCTTGCGTGCAGAAGGGGGAtatacgccccccccccccccccccccccccccccccccccccccccccccccgtcaattTCCCCTTCTCTTCTTTATATTTTACCTTCCTCCGTTTCCAGGGTTCTGCTGTTGATGTAGAGCAGCTTGTTTTTAGAGAAACGGTTTTCTGTGGTGGAGCCCTGCACGCATACAGACAGATGCGCGCGAAGcacggagaggagacagacaaCGACGTTAACGGTAGGAATGAACGGAAAATGCTGTGCGCCAGCAGTGGCAGCTGTGATATTACCGAGAACTCAGTGATCCGCACGACGAGAGAAGAGAAGCCCCGCTGCAGCAACGAGCCTCTCCCGGTACCCAACCCTTCAGGATATAGGTCTGTGACTTCAGAggaacacacataaacacagacaaacagagagagggagagagctccCTAACCTCTCCGAAGAGGGTCACTGGGGCCCAACACTGACACTCTCACTTTGACATTATCATTGCTGTCGCCCTGGGTGGATGAGCCGCCTGTCTGGACGCCTGCGGTCGGGGGGAGGTGGGAGGGTGGGGTGCGACGGCAGGGCCGTAGTGGAGGAGCAGGGGTATGAGGGGTTTGAGGGGGAAAGGGCTGTAGGGGTACAGGAGGAGGTCACAGTGGAACCCAGCGCTGAGGCTGGAGCTCAGGAGACCCTTGAACTTTtaccctccccctcacccccctccctGTCTAACGGTCTTCACCTGCACAGGAGGCCTGTCCTTGGAACACGCAGacggaggcagacagagacacacacactcaacgacgctccaacacacacacctggacagACCTTCATAGGCATGCAGACACACAAGGACATCCAAATGCAGACACCCGCAGAGACGTGCATggacgctcacacacacacaagtgctcACAGACAAATGGATGCTCACACACACTTGGACTCTGCCGGTCCAGAGCAGCCCAGAACTGATTCATCACCAGAGACACACACCAGATCACCTCAGCGACAGGTCCTCCTGCCTCTCAATCATTCAGCCTGCACCAATCAGCAAGCTGCTTTCTCTCCCTGCAGCCCCGCTCCTTCACACTCTGCAAACAGAGACATGCCCCCGGCCATTAGCCCTGCCCCTAATATTAGTTCAATACCTCTAGATCTCTCTAAACCCTCAAGAGCTACTGGTCCAAATCCTCCAGGCCTTTCTCCTATCGGTCCAGCCTGTCCAGACCTTTCTATTATTGGTCCAGCCCTTGTAGACCCCTCCCCTGTACCTGTCGAAGGTGAGAGAAAGTATGCACTTCGTAGCTCCGGTCGACCTCGCTTCCCCTGCCAGCTACGCAAGTCTTCCCGCATCCGCCGATGcactgaggatggagagaggaggggagggagggagagcgagagggaggaggaagaggaagaggagaaagagagggtgagtgtaCATGTGAAGGTAGAGCGCCCCACAGTGGAGGAGTGTCTATCTGCAGCCTTCAAGCCTGCAGCCTCCAAGCCTGCAGCCTCCCCTGCACCAGTACCTGTAGCACCACTCCCCTCAACACACCCCTCATCACGCCCCTCCTCTCACTCCGCCCCCCGGCCATCGCCCAAACCCCAACAAAGAACTTCAACCAAACCCCAACCCAAATCTTCAACCAATGCCAAACCAAAATCCCAACCCAGACCATCGATGAAAGCCTCGCCCAAACCTTTGCCCAGATCAGCAACCAATCCCAGACCAGCAACCAATCCCTCGCCTCGTCCATTGACCAATACAGTGCCCCGGCCGGCAGTGAAGAAGGAGGAGCCTGGTGAACTAGATCCCCTTACCAAACGGAAACGCCGGTTTGTTGGTGTGAGGCGTATCGTGGTGAAGGTAGCTCGTATCCCAGTCAACCTCAGCCGACGCCAGAAGAGCTACAAGATTTCCTCCATGGAGACAGTTGAGAAGGGCGGGGCAGGTGGTGATGGCAGGTTGGAGGGAGCCGAGGGGGGGACAGCGGTAGTTCGAGAGCCGACTGCGCTCCTCCGTATGAAGAACAACGGGAAGAGTGTGATGGTCATGTTCCCGCCTGGAGAACTTCCTGTGATCCTGAAACGTCGCCGTGGCCGACCTCCCAAACAGGTTGTACCTGGAACGCCGGATAAAACCACCGGTGGGAATGGCGAGCCCAAGAAACCTCGTCGGCGCCGGAGGGCCAAGCTCCCGTCTCCGCAACCGTCATACGTGAACGACACCAACGACGTGAAGACGGAGTACGGAGACGTTCTGTCCAAACTGGCATTCCTCAACCGCCAACCGCCGGCCACTGGCCGCTGCTCCCCACCACGCTGCTGGACACCCAGCGAACCGGACAGCTTTCACACGCCGTCCGACAACCCTGGGATCTCCGCCCTGCTCCACCGACTCACAGGGTTCAGACgcaggggaggcagggggggaggtgttggaggcaggggaggaggagcagggggaggagcaggaggagccggCGGAGAGGGCTTCAAGAGCTCCTTCAGTGACTTTTTTGAGACGATCGGGAAGAAAAGGAAAGTGGCTCTGTCAGAACCAGGGTTACTCAAGAAACGAGGGAAGGGTgggggaggcagaggaggaggggcTGCAGGGGGGGAGATGGGGGTTGGGGGTGAGGGGGGGAAGCCGGTTAAGAAACGACGCTCGCGCAAGAACGGGGTTctaaagggggaggcaggggggcaGCTGGAACAAGACTGGTTTAATGGGGGAGGTgtctggggggaggaggggggaggcatGAGGGAGAGAGGGCCAGGAGGGTACCAGGTCTGTGGCTCCCCGAGGGGGGGCTTCCTGTCCtgtgagggggggagagggagtgcGTACGGCAGCCCTGGCGGAAGCAGAGgcggtggaggtggagaggaggcgCAGGGTTTGTTCGCCGGATATTTCCGCTCCCTGCTGGACTCTGACAACTCCTCAGACCTCCTGGACATCTCCTCCCCTCGCCCTGACCCCAGGAAACCTCCTCCCACCCTGAGCTACGACTCTTCCAGCCCTGCCCGCGGACCAGGCCCTCGCTGGTCCCCAGCCTGCCCCAAACGCAGACCCAAAGGAGAGCCAAGGGAGAACCCAACCCTACATCATCCCTCTTCCAGACCTCCTTACAGTTATAACCTGTCCCAGaactcccccacctcctcctcgtTCCCCAAGTCcaacgctccctccctccctccgtcccgcTCCCCCagctccccccatccctcctcctcctcctacggTCACTACACGCCTggctattcctcctccactcctgcAGGGGGCAGCGCAGTGCCACAAAGACCCGCAGACTGCAGCTTCGCAGCCTATGGGGCAGCCGGGCTGAGTAAGGCCTCCACGGCCACCCTCGTGGGCCAAGGTCAGATGGGATATTCCAGTTTTTCCAAGCGGGGCTATGGGGGCTACCTTGGGCAGGTTGGACCATCTTCTCCAGGAAGAGGGGGGTATATGGCCATGGCCAAGAACAGCCCTTTCCCCTCCCCATCTTCCCCAGAGGGATACAGACACTACCCCTCCAACCAGTGTAACTACAGgCCGGGCTATGGTGGCTACCCAGGAGGCTGCAGTGACCCAGGCCCCAGCGAGCCCAAAGACATCCTGGACATCTCCAACTACACCCCCCAGAAGGCCAAGCGACAACCCTTCCTCGAGAGTCTATCAGAGTCCTCATCTGACTCCTCCCACCTAGGGGTCACCGGGTCAGGAGGTGGGGTCAGTGGCGGAGGCTCGGGGTCAGGCTCCGGAGGTGGGGCTTATAggcagggtggagggagggagtctcttcttattggtggaGAGGGAGGTCAAGGACAGTCCAGCCTATCAAGTTTGGAGAAGCTGATGATGGACTGGCATGAGAGTGCCTCAGGCCCCTCCTACAACTGGAGCCAGAATGTTCTCTTCCAGGGGCAGGGGAAGCCCAGCCGGGGGCGCAGGAAACGGAATGCTGCCGAGCCCCAAACGGAGAAGGAGGGGGGTGGCGGACCAGGAGCAGGACCAGGGACCACCCCAGACTCTCCCAACAGCCCGCCAAGCCAGACCCAGCCCTCCACCCCAACCCAGGGTTCTGGTGGAAAACGCAGTGGAATGGGGGGACGGCAGGCCAGGGGGgtaagaggaggcagaggaggggggCTGTCCCCGTCCCCTGGAGAGCGCCCCCCAGGGGGGAAGAAGGGTAAGGCTACTGGGGGTGGGGTTGGAGGtggagggagtgctgctcagggGGGGTTGTTCCAGGAAGGCCTTGACTACTACAGTGGAGACAGCAGCagcctctcccccctccctaacCCCACCTCACATCTCGGCTACCCCACCGAGCCCTGTGAGTACCCCTCCCCGTGCCCTTACtctgcccatccctccaccccgtCCTCAGAGGAGCACTACCCAGCCCTCTTCCCTGGCGAggcttcatcctcctctctctcccctggaaTGACTTCCacatcctcctcctttcctcccaaACTATCCCCCGCTCCCCAGCCCTACCATCCCCCTCTCACCCCTGCTCCTCCCCCcgcctccttctccccctcctgctCACCATCGCCACGGTTACTGCCACACTGTGGAACAGCGCTGAGCCCCCCCCATCGCAACCTGGCAACCGTTTCCAAGGACCACTTCCCCTCCCAGTACGATTCTCCCAGTTACTGTAGCTCCCCCTATTGGTACGGAGGGGCATCGCTCAGCAGCCcccacgctaacacacacaccgctacacacacacatgctaatgCACACGGCAACACACATGTACACGCTAATGTTAACCCTCACGCTAGCCCTAACAATCACCCTAACACTCACACTACcgcacacatcaacacacacacacaccctaacagcAACCCTCATGCAAACATGAGTCCACACGCACCTCAGACAAGCTtgagcccacacacacaccctaaccccaacaccaacccgcacacacacaccaacccccacatcaatacacacccgcacatcaacacacaccttcATTCAAACCAGAACCAacatcctcatccacatccacacccccacccgaACACTTACCCCAACCCCCATcccaacaccacacaacactcCCACCCTAACCTCTCCCCACACACTCACCCCCACCCTAACCTCTCCCCCCACTCCCACACTCACCCCCTGCTTTATGAGGAGCGCCCCCCTCACAGCACCATGCCCACGCAACCTCACAAACGGGACCTGCCTCCCCACCTCAACTCAGGGCTGCGACCAGCCCCCCTGCAGCTCTCCCcgtacccctccccccaccacaAGCCTCCCCTGGTGTCCTCGCCACATTCTGAGGACATGGGTTACCCCCCGTACCCCGGGATGCACCCCCGCTACCACCCACAGCCCCCGCCTCGAGGAGGAGGGGTGCTCTGTCAGCTACTAGACCCCCCCAGCGATGACAGCTTCAGTGTCACCAGCTTGTAGCTGCAGggGCATTAAATCTAAACTTTTTTCAGATTTGTAAACTTTTTTTAAGGAGAGACTTTCAGAGACAAGATGATGGATCAGAATTTATCTCCTAACTCTGGACAGTAGATCTTCAGTTCTCCAGCTATGACAATCAAAAGCcaactgcaacacacacacaaaggcgcacacagacacacagacacagctggaAAGAGGGTGTGGCCTAGAGGAGCTGTGGGAGGAGTGACAGACGCTGAGGAACAGAGAGGCGGGGCCTAATGGAACAATTCTGCCCCCAACGCTAAACACACTAATCCCCTATCCCCGAAACCATACACCCTTTGCTCTGTGTGTGCTCTATGAGAGAAGTGGACTACAGCATCAGCTCTTGAATTACCAGCATCTGTACATAGACTCCAACTCCAACCACAGACCCATAACCTCACCACAACATTTAAACAGTTAAGACAACGTTACTAATGTTCCATCAGTGTTTTCTAACGTTCAGGCTTTTAGCCAGGACCACAGACCCACAACCCCACCCAGGGGCGGACTGGCAATCTGGCATTTTTGGCAAAttccagatgggctggtccattttaAGCTCAGTGGGCCTATCTAACTTTTTTCACGCAAAAAGATCACTATTTGGCTAATAATGGGTGCCTCGAGGGAAAAAAGGGGCCAGTGTGTGGGCCTTGAGGAAAGAAATGGGCCTAtgtgttagaaatgccagggCCAATTTCTGGTCCAAGTCCGTCCCTGACCACAGTGTGCTACAATAGCTCTACACAACGTTCCATCATCGTTTCTCTATTGTTCTGCCATGGTCTCTGCTCTGATGGAAGGACTCCAGCATGGAGACTCTACATCCTGTGTTTCACTGTTTTTACTAGGAGGGAAAGAGACCCGACACACACTCTGACCCCAAAGAGACTGacgtgtgtttatttgtgtgtgtaacCACGCGGATGGActtctgtatgtatgtatgtgtgtgtttggggtctAAAGGGGTAGAGCTCTACATCTGAAATGGTGGATGGATGAACAGGGCTTCTCTTCCTTCTTTTACGCTCTCCTTTTTTCCGTGGTCTTGTGTTGTTTGGTGGTTTTTGTGATGAACAGTTGTATATGTCTGTTAATGTCATGATGTATCTACAGTGCCAATATTTAAATACACTCTGATCTGGCCATTGGTAAA
>TU1786134
GGGTGCTCTGTCAGCTACTAGACCCCCCCAGCGATGACAGCTTCAGTGTCACCAGCTTGTAGCTGCAGggGCATTAAATCTAAACTTTTTTCAGATTTGTAAACTTTTTTTAAGGAGAGACTTTCAGAGACAAGATGATGGATCAGAATTTATCTCCTAACTCTGGACAGTAGATCTTCAGTTCTCCAGCTATGACAATCAAAAGCcaactgcaacacacacacaaaggcgcacacagacacacagacacagctggaAAGAGGGTGTGGCCTAGAGGAGCTGTGGGAGGAGTGACAGACGCTGAGGAACAGAGAGGCGGGGCCTAATGGAACAATTCTGCCCCCAACGCTAAACACACTAATCCCCTATCCCCGAAACCATACACCCTTTGCTCTGTGTGTGCTCTATGAGAGAAGTGGACTACAGCATCAGCTCTTGAATTACCAGCATCTGTACATAGACTCCAACTCCAACCACAGACCCATAACCTCACCACAACATTTAAACAGTTAAGACAACGTTACTAATGTTCCATCAGTGTTTTCTAACGTTCAGGCTTTTAGCCAGGACCACAGACCCACAACCCCACCCAGGGGCGGACTGGCAATCTGGCATTTTTGGCAAAttccagatgggctggtccattttaAGCTCAGTGGGCCTATCTAACTTTTTTCACGCAAAAAGATCACTATTTGGCTAATAATGGGTGCCTCGAGGGAAAAAAGGGGCCAGTGTGTGGGCCTTGAGGAAAGAAATGGGCCTAtgtgttagaaatgccagggCCAATTTCTGGTCCAAGTCCGTCCCTGACCACAGTGTGCTACAATAGCTCTACACAACGTTCCATCATCGTTTCTCTATTGTTCTGCCATGGTCTCTGCTCTGATGGAAGGACTCCAGCATGGAGACTCTACATCCTGTGTTTCACTGTTTTTACTAGGAGGGAAAGAGACCCGACACACACTCTGACCCCAAAGAGACTGacgtgtgtttatttgtgtgtgtaacCACGCGGATGGActtctgtatgtatgtatgtgtgtgtttggggtctAAAGGGGTAGAGCTCTACATCTGAAATGGTGGATGGATGAACAGGGCTTCTCTTCCTTCTTTTACGCTCTCCTTTTTTCCGTGGTCTTGTGTTGTTTGGTGGTTTTTGTGATGAACAGTTGTATATGTCTGTTAATGTCATGATGTATCTACAGTGCCAATATTTAAATACACTCTGATCTGGCCATTGGT
>TU1786136
TTACTGCCACACTGTGGAACAGCGCTGAGCCCCCCCCATCGCAACCTGGCAACCGTTTCCAAGGACCACTTCCCCTCCCAGTACGATTCTCCCAGTTACTGTAGCTCCCCCTATTGGTACGGAGGGGCATCGCTCAGCAGCCcccacgctaacacacacaccgctacacacacacatgctaatgCACACGGCAACACACATGTACACGCTAATGTTAACCCTCACGCTAGCCCTAACAATCACCCTAACACTCACACTACcgcacacatcaacacacacacacaccctaacagcAACCCTCATGCAAACATGAGTCCACACGCACCTCAGACAAGCTtgagcccacacacacaccctaaccccaacaccaacccgcacacacacaccaacccccacatcaatacacacccgcacatcaacacacaccttcATTCAAACCAGAACCAacatcctcatccacatccacacccccacccgaACACTTACCCCA
>TU1786137
CCCTCGTGGGCCAAGGTCAGATGGGATATTCCAGTTTTTCCAAGCGGGGCTATGGGGGCTACCTTGGGCAGGTTGGACCATCTTCTCCAGGAAGAGGGGGGTATATGGCCATGGCCAAGAACAGCCCTTTCCCCTCCCCATCTTCCCCAGAGGGATACAGACACTACCCCTCCAACCAGTGTAACTACAGgCCGGGCTATGGTGGCTACCCAGGAGGCTGCAGTGACCCAGGCCCCAGCGAGCCCAAAGACATCCTGGACATCTCCAACTACACCCCCCAGAAGGCCAAGCGACAACCCT
>TU1786139
AGGGCCAGGAGGGTACCAGGTCTGTGGCTCCCCGAGGGGGGGCTTCCTGTCCtgtgagggggggagagggagtgcGTACGGCAGCCCTGGCGGAAGCAGAGgcggtggaggtggagaggaggcgCAGGGTTTGTTCGCCGGATATTTCCGCTCCCTGCTGGACTCTGACAACTCCTCAGACCTCCTGGACATCTCCTCCCCTCGCCCTGACCCCAGGAAACCTCCTCCCACCCTGAGCTACGACTCTTCCAGCCCTGCCCGCGGACCAGGCCCTCGCTGGTCCCCAGCCTGCCCCAAACGCAGACCCAAAGGAGAGCCAAGGGAGAACCCAACCCTACATCATCCCTCTTCCAGACCTCCTTACAGTTATAACCTGTCCCAGaactcccccacctcctcctcgtTCCCCAAGTCcaacg
>TU1786138
CTGCACGCATACAGACAGATGCGCGCGAAGcacggagaggagacagacaaCGACGTTAACGGTAGGAATGAACGGAAAATGCTGTGCGCCAGCAGTGGCAGCTGTGATATTACCGAGAACTCAGTGATCCGCACGACGAGAGAAGAGAAGCCCCGCTGCAGCAACGAGCCTCTCCCGaaGTGATGGGCAGTCAAGAGCAGTAgctgagaaagagaggaaagttTATAGTGTGTGCTAGAGACGGGTGTGTAGTATGTGTGCATGAACTGTACTGACATACTGCCGACCCAAAGaaccacagcagacagacagccggCCTGGATAAACTCTACCAGAATGGTACCCAACCCTTCAGGATATAGGTCTGTGACTTCAGAggaacacacataaacacagacaaacagagagagggagagagctccCTAACCTCTCCGAAGAGGGTCACTGGGGCCCAACACTGACACTCTCACTTTGACATTATCATTGCTGTCGCCCTGGGTGGATGAGCCGCCTGTCTGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951070.1 False 6892 mRNA 0.58 5 52352725 52396978
TU1786134 False 1248 lncRNA 0.46 2 52352728 52355011
TU1786136 False 490 lncRNA 0.54 1 52355342 52355831
TU1786137 False 300 TUCP 0.59 2 52356752 52357310
TU1786139 False 419 lncRNA 0.64 1 52357494 52357912
TU1786138 True 521 lncRNA 0.53 3 52360300 52396595

Neighbor

gene id symbol gene type direction distance location
LOC110496489 LOC106588773 coding downstream 808 52331974 ~ 52351917 (-)
LOC110496488 LOC106588772 coding downstream 21164 52317137 ~ 52331561 (-)
LOC110519830 LOC106588776 coding downstream 70850 52271271 ~ 52281875 (-)
sytl1 LOC106588777 coding downstream 83407 52261367 ~ 52269318 (-)
zgc:110239 LOC100846955 coding downstream 92734 52252447 ~ 52259991 (-)
LOC110496493 LOC106588771 coding upstream 1680 52398658 ~ 52428130 (-)
sesn2 LOC106588768 coding upstream 31247 52428225 ~ 52436609 (-)
matn1 matn1 coding upstream 44128 52441106 ~ 52455251 (-)
LOC110496494 LOC106588766 coding upstream 65391 52462369 ~ 52472077 (-)
LOC118941185 sdc3 coding upstream 76232 52473210 ~ 52511642 (-)
G1561239 NA non-coding downstream 2422 52347881 ~ 52350303 (-)
G1561233 NA non-coding downstream 42192 52310308 ~ 52310533 (-)
G1561230 NA non-coding downstream 45060 52307422 ~ 52307665 (-)
G1561225 NA non-coding downstream 47874 52304345 ~ 52304851 (-)
G1561305 NA non-coding upstream 14068 52411046 ~ 52412380 (-)
G1561306 NA non-coding upstream 14552 52411530 ~ 52413003 (-)
G1561290 NA non-coding upstream 212125 52609103 ~ 52612099 (-)
G1561366 NA non-coding upstream 235703 52632681 ~ 52635148 (-)
G1561367 NA non-coding upstream 236510 52633488 ~ 52634262 (-)
G1561167 NA other downstream 102236 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 169518 52179320 ~ 52240648 (-)
G1560339 NA other downstream 897440 51381731 ~ 51455285 (-)
LOC110496463 LOC106588703 other downstream 1138581 51213151 ~ 51214398 (-)
thsd7aa LOC106588717 other downstream 1702472 50599944 ~ 50755992 (-)
G1561279 NA other upstream 248011 52644989 ~ 52647777 (-)
G1562762 NA other upstream 1201672 53598650 ~ 53602694 (-)
tomm7 NA other upstream 1224922 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1355428 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1477432 53874410 ~ 53875592 (-)

Expression


Co-expression Network