LOC110496493 (LOC106588771)


Basic Information

Item Value
gene id LOC110496493
gene name LOC106588771
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52398658 ~ 52428130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953130.1
TTCTGTTACTGGAACGTCGGAGTTTCATGGAACTTAGTTCCCAACAGAGAATTGTGGATCTAGCCTTAAAAAACAGACGGATACTATGTTGACAGATGCAGAGAgcgagtgtgtgtttgtctctttgGGTAGGAAGGGTTCAGCTGACTGGGACATGTCGATTCCTGGGCTCAGTGGTGTTCGAAGACTACAGCACCGAAGTTATGTCAAATCACCGGATGTTGCGTTTGGACAATTCCATTTCTACACGAATTATGTTATTCAAAGTCAAAATCAGGGCTGAATTCATTACGCccattctgttgcaaaacgtctCGTCTGTTGCAACGTTTTGTAACAAACCGTTCACTCCAAAcggaaaacgttttgcaacgaaaAGGAtcgtttctattggacaaattcatgtAGGTCCCTTCCCATTTCGTTCTATTTGCTTTCGTTTGGTTCTTAAATGGTAAACgatttccgttgcaaaacgtAATTAAGAAGCCCCggattatttgttttttttgtttaaattcCGTGAGAGTGACACAAGCATCCAGGGAGCGCGCTTTGGAGTGGACGTCAGTCACTGCGCGTGCCAGTCAATCCAACCCTTCCGGACACAGAGAGCGCGCCGCGCATCCACATTCCCTCCCGCGAGGAGCGCTCAGCTGTCTTCTCCCGTTCTGTCTCAGCGCCTGGAATTTTACCTCCCCGGTGCTGTTCACACCTTTCTTCGCCAGCCCCCGGGAATAACGGGCGACCCGTAGTGCTCTCCGtggcgATGGTGTCTGACATGATCTGACAGAGGAAGACTGCAGcgaTAGTCTCCGTGGTTATTATGGGCTGTGCCCACTGTAAACAGAAAAAGGCTGCAGCCAAGGCGGCTTCAGCCGAGCTGTCTGACCCATCTCCTAGCAACAGTCCTGATGGGGTTGTGTCTACAGCATTGGCCATGCCCCGTTATCACCCTGGCCCCACCCACCCGACAATACCTGACTTCAACAAGCCTTTTGGCTCCGCCTGTTTTCCTAATACCAACGCACAAACCTGCGTAGGGGGCGTCACAGgtggaggtgtaaCTCTCTTCATAGCATTGTATGACTATGATGCTCGTACTGAAGATGACCTGTCCTTCCAGAAGGGAGAGAAgttccacatcatcaacaacacAGAGGGGGACTGGTGGGAGGCCCGGTCGTTGGACACTGGGAAGTCTGGTTATGTCCCTAGTAACTATGTAGCTCCTGTAGACTCTATACAGGCTGAGGAGTGGTATTTTGGTAAGATGGGGAGAAAGGATGCAGAGAGACAACTCCTGGGACTGGAGAACCCCAGAGGAACATTCCTtatcagagagagtgagaccacCAAGGGTGCCTACTCTCTGTCTATCCGGGACTGGGATGATGGTAAAGGTGACCACGTCAAACATTATAAGATCAGGAAGCTGGACAATGGAGGATATTATATCACAACACGCACACAGTTCGACACCGTGCATCAACTGGTGCAGCACTACACAGAGCGAGCAGCAGGTTTGTGCTGTAGGTTGATTGGCAGCTGTAGGCGGGGCATGCCTAAGCTAGCCGACCTATCGGTGAAGACCAAGGACGTGTGGGAGATTCCCAGAGAATCTCTCCAGCTGATTAAGAAGCTGGGCAACGGGCAGTTTGGAGAAGTCTGGATGGGCTGTAACGATGGGCTGTGTTACTTTCTGACCACACCCTGTCCCAATGCCACGCCCCTCACCCTGGGGCTGGGGCGGGACGCCTGGGAGGTTGCCAGGAAAACGCTGGCCCTAAACAGAAAGTTGGGCCAGGGCTGCTTCGGAGACGTCTGGATGGgtatgTGGAACGGCACCACCAAGGTAGCAGTGAAGACATTGAAGCCAGGCACCATGTCTCCAGAGGCTTTCCTAGAAGAGGCTCAGATCATGAAGAGACTGAGACATGACAAGCTGGTGCAGCTGTACGCTGTGGTCTCTGAAGAACCCATCTACATCATCACAGAGTTCATGAGCCAAGGTAGCTTACTGGACTTCCTAAAGGACGGGGAAGGAGGGAATCTGAAGCTGCCTCAACTGGTGGATATGGCTGCTCAGatagcGGCAGGCATGGCATATATAGAGCGTATGAACTACATCCATCGTGATCTGCGAGCGGCTAACATTCTGGTCGGGGAAAATCTGGTGTGCAAGATCGCTGACTTTGGTCTGGCCAGACTCATAGAGGACAATGAGTACACAGCCAGACAAGGAGCCAAGTTCCCCATCAAGTGGACAGCTCCTGAAGCAGCTCTATACGGGCGTTTCACCATCAAGTCTGATGTGTGGAGCTTTGGTATCCTGCTCACTGAACTCGTCACAAAAGGACGCGTGCCTTACCCAGgtatgaATAACCGCGAGGTCctggagcaggtggagagaggCTACAGGATGCCCTGTGCGGTGGGTTGTCCTGCCTCCCTCCATGAGCTGATGGTGCAGTGTTGGCGGAGAGAGGCGGACGAGAGACACACCTTTGAATACCTGCAGGGCTTCCTGGAGGACTACTTTACTGCTACTGAACCCCAGTACCAGCCTGGAGAGAACCTGTGAccacgcacatgcacacagacacaagtgtgtacacacacacacacacacacacaacctatacATACTGTAAGCTTTATCTACTATATGTTGCTGTCTGTCAGGGCAGAGCAATCAAACACGAGCTAgaattcttcctctcctcctatctGTGCTCGGCTGCCCAGACCAGCAGAGGAAAGGGACTGTTGTCAGTGTACTATGCCTTAATAGCTTTACTGAGTTACCATGACAACAAGGCTTCGTCTTTAGATGGAGGTTGGgggggtttaaggttagggttagatggggttagggGTCAAGGTTTGTGGGGCTGTAGGGGACCAGTTTGTGCCTAAAATCTTTACTTGTGtaagatgatgatggtgatgacttCACTCCAATGCTTTTTACTCTCTAAGCATCTTTCATGACGTCAAAGTGGATTTTCTTTCTGCAACCTTTCTTAAACCTGATATTGACAACCCcggtttttaatttgtttatttaatgCTTGTATATCTACTGTTTGTATCTTAGCTAACACATGGGGTCTGTTCAGCAGGGTGCAACGTTTCAGAATATTCAGATAGACAATCATATATGTTCTATACAGTATATTTTTATCAGGTAGAATAGGCGTTTGTACCAGCTCTATTCGTAAAATGTCTATGTGCTATGTTCTGACTATTTCACCTCTCTGAATCCACGCATGTTCTGTATACAGCCTTCTGCCAATGGGAGGGCCAGGCAAAGGGTCAAATAAATGCACAGAGGTCGGAGTTGGGACCGTGTGCAGGAGTGTGGGTTTTTATGATGATTTGAACTTTTCTGTTGTTTCAGAtgtttctgtgtctgtggtaAAGTTCTTTTCCACAATA
>XM_021572427.2
CTGTTACTGGAACGTCGGAGTTTCATGGAACTTAGTTCCCAACAGAGAATTGTGGATCTAGCCTTAAAAAACAGACGGATACTATGTTGACAGATGCAGAGAgcgagtgtgtgtttgtctctttgGGTAGGAAGGGTTCAGCTGACTGGGACATGTCGATTCCTGGGCTCAGTGGTGTTCGAAGACTACAGCACCGAAGTTATGTCAAATCACCGGATGTTGCGTTTGGACAATTCCATTTCTACACGAATTATGTTATTCAAAGTCAAAATCAGGGCTGAATTCATTACGCccattctgttgcaaaacgtctCGTCTGTTGCAACGTTTTGTAACAAACCGTTCACTCCAAAcggaaaacgttttgcaacgaaaAGGAtcgtttctattggacaaattcatgtAGGTCCCTTCCCATTTCGTTCTATTTGCTTTCGTTTGGTTCTTAAATGGTAAACgatttccgttgcaaaacgtAATTAAGAAGCCCCggattatttgttttttttgtttaaattcCGTGAGAGTGACACAAGCATCCAGGGAGCGCGCTTTGGAGTGGACGTCAGTCACTGCGCGTGCCAGTCAATCCAACCCTTCCGGACACAGAGAGCGCGCCGCGCATCCACATTCCCTCCCGCGAGGAGCGCTCAGCTGTCTTCTCCCGTTCTGTCTCAGCGCCTGGAATTTTACCTCCCCGGTGCTGTTCACACCTTTCTTCGCCAGCCCCCGGGAATAACGGGCGACCCGTAGTGCTCTCCGtggcgATGGTGTCTGACATGATCTGACAGAGGAAGACTGCAGcgaTAGTCTCCGTGGTTATTATGGGCTGTGCCCACTGTAAACAGAAAAAGGCTGCAGCCAAGGCGGCTTCAGCCGAGCTGTCTGACCCATCTCCTAGCAACAGTCCTGATGGGGTTGTGTCTACAGCATTGGCCATGCCCCGTTATCACCCTGGCCCCACCCACCCGACAATACCTGACTTCAACAAGCCTTTTGGCTCCGCCTGTTTTCCTAATACCAACGCACAAACCTGCGTAGGGGGCGTCACAGgtggaggtgtaaCTCTCTTCATAGCATTGTATGACTATGATGCTCGTACTGAAGATGACCTGTCCTTCCAGAAGGGAGAGAAgttccacatcatcaacaacacAGAGGGGGACTGGTGGGAGGCCCGGTCGTTGGACACTGGGAAGTCTGGTTATGTCCCTAGTAACTATGTAGCTCCTGTAGACTCTATACAGGCTGAGGAGTGGTATTTTGGTAAGATGGGGAGAAAGGATGCAGAGAGACAACTCCTGGGACTGGAGAACCCCAGAGGAACATTCCTtatcagagagagtgagaccacCAAGGGTGCCTACTCTCTGTCTATCCGGGACTGGGATGATGGTAAAGGTGACCACGTCAAACATTATAAGATCAGGAAGCTGGACAATGGAGGATATTATATCACAACACGCACACAGTTCGACACCGTGCATCAACTGGTGCAGCACTACACAGAGCGAGCAGCAGGTTTGTGCTGTAGGTTGATTGGCAGCTGTAGGCGGGGCATGCCTAAGCTAGCCGACCTATCGGTGAAGACCAAGGACGTGTGGGAGATTCCCAGAGAATCTCTCCAGCTGATTAAGAAGCTGGGCAACGGGCAGTTTGGAGAAGTCTGGATGGgtatgTGGAACGGCACCACCAAGGTAGCAGTGAAGACATTGAAGCCAGGCACCATGTCTCCAGAGGCTTTCCTAGAAGAGGCTCAGATCATGAAGAGACTGAGACATGACAAGCTGGTGCAGCTGTACGCTGTGGTCTCTGAAGAACCCATCTACATCATCACAGAGTTCATGAGCCAAGGTAGCTTACTGGACTTCCTAAAGGACGGGGAAGGAGGGAATCTGAAGCTGCCTCAACTGGTGGATATGGCTGCTCAGatagcGGCAGGCATGGCATATATAGAGCGTATGAACTACATCCATCGTGATCTGCGAGCGGCTAACATTCTGGTCGGGGAAAATCTGGTGTGCAAGATCGCTGACTTTGGTCTGGCCAGACTCATAGAGGACAATGAGTACACAGCCAGACAAGGAGCCAAGTTCCCCATCAAGTGGACAGCTCCTGAAGCAGCTCTATACGGGCGTTTCACCATCAAGTCTGATGTGTGGAGCTTTGGTATCCTGCTCACTGAACTCGTCACAAAAGGACGCGTGCCTTACCCAGgtatgaATAACCGCGAGGTCctggagcaggtggagagaggCTACAGGATGCCCTGTGCGGTGGGTTGTCCTGCCTCCCTCCATGAGCTGATGGTGCAGTGTTGGCGGAGAGAGGCGGACGAGAGACACACCTTTGAATACCTGCAGGGCTTCCTGGAGGACTACTTTACTGCTACTGAACCCCAGTACCAGCCTGGAGAGAACCTGTGAccacgcacatgcacacagacacaagtgtgtacacacacacacacacacacacaacctatacATACTGTAAGCTTTATCTACTATATGTTGCTGTCTGTCAGGGCAGAGCAATCAAACACGAGCTAgaattcttcctctcctcctatctGTGCTCGGCTGCCCAGACCAGCAGAGGAAAGGGACTGTTGTCAGTGTACTATGCCTTAATAGCTTTACTGAGTTACCATGACAACAAGGCTTCGTCTTTAGATGGAGGTTGGgggggtttaaggttagggttagatggggttagggGTCAAGGTTTGTGGGGCTGTAGGGGACCAGTTTGTGCCTAAAATCTTTACTTGTGtaagatgatgatggtgatgacttCACTCCAATGCTTTTTACTCTCTAAGCATCTTTCATGACGTCAAAGTGGATTTTCTTTCTGCAACCTTTCTTAAACCTGATATTGACAACCCcggt
>XM_021572428.2
TCTGTTACTGGAACGTCGGAGTTTCATGGAACTTAGTTCCCAACAGAGAATTGTGGATCTAGCCTTAAAAAACAGACGGATACTATGTTGACAGATGCAGAGAgcgagtgtgtgtttgtctctttgGGTAGGAAGGGTTCAGCTGACTGGGACATGTCGATTCCTGGGCTCAGTGGTGTTCGAAGACTACAGCACCGAAGTTATGTCAAATCACCGGATGTTGCGTTTGGACAATTCCATTTCTACACGAATTATGTTATTCAAAGTCAAAATCAGGGCTGAATTCATTACGCccattctgttgcaaaacgtctCGTCTGTTGCAACGTTTTGTAACAAACCGTTCACTCCAAAcggaaaacgttttgcaacgaaaAGGAtcgtttctattggacaaattcatgtAGGTCCCTTCCCATTTCGTTCTATTTGCTTTCGTTTGGTTCTTAAATGGTAAACgatttccgttgcaaaacgtAATTAAGAAGCCCCggattatttgttttttttgtttaaattcCGTGAGAGTGACACAAGCATCCAGGGAGCGCGCTTTGGAGTGGACGTCAGTCACTGCGCGTGCCAGTCAATCCAACCCTTCCGGACACAGAGAGCGCGCCGCGCATCCACATTCCCTCCCGCGAGGAGCGCTCAGCTGTCTTCTCCCGTTCTGTCTCAGCGCCTGGAATTTTACCTCCCCGGTGCTGTTCACACCTTTCTTCGCCAGCCCCCGGGAATAACGGGCGACCCGTAGTGCTCTCCGtggcgATGGTGTCTGACATGATCTGACAGAGGAAGACTGCAGcgaTAGTCTCCGTGGTTATTATGGGCTGTGCCCACTGTAAACAGAAAAAGGCTGCAGCCAAGGCGGCTTCAGCCGAGCTGTCTGACCCATCTCCTAGCAACAGTCCTGATGGGGTTGTGTCTACAGCATTGGCCATGCCCCGTTATCACCCTGGCCCCACCCACCCGACAATACCTGACTTCAACAAGCCTTTTGGCTCCGCCTGTTTTCCTAATACCAACGCACAAACCTGCGTAGGGGGCGTCACAGgtggaggtgtaaCTCTCTTCATAGCATTGTATGACTATGATGCTCGTACTGAAGATGACCTGTCCTTCCAGAAGGGAGAGAAgttccacatcatcaacaacacAGAGGGGGACTGGTGGGAGGCCCGGTCGTTGGACACTGGGAAGTCTGGTTATGTCCCTAGTAACTATGTAGCTCCTGTAGACTCTATACAGGCTGAGGAGTGGTATTTTGGTAAGATGGGGAGAAAGGATGCAGAGAGACAACTCCTGGGACTGGAGAACCCCAGAGGAACATTCCTtatcagagagagtgagaccacCAAGGGTGCCTACTCTCTGTCTATCCGGGACTGGGATGATGGTAAAGGTGACCACGTCAAACATTATAAGATCAGGAAGCTGGACAATGGAGGATATTATATCACAACACGCACACAGTTCGACACCGTGCATCAACTGGTGCAGCACTACACAGGCTGTAACGATGGGCTGTGTTACTTTCTGACCACACCCTGTCCCAATGCCACGCCCCTCACCCTGGGGCTGGGGCGGGACGCCTGGGAGGTTGCCAGGAAAACGCTGGCCCTAAACAGAAAGTTGGGCCAGGGCTGCTTCGGAGACGTCTGGATGGgtatgTGGAACGGCACCACCAAGGTAGCAGTGAAGACATTGAAGCCAGGCACCATGTCTCCAGAGGCTTTCCTAGAAGAGGCTCAGATCATGAAGAGACTGAGACATGACAAGCTGGTGCAGCTGTACGCTGTGGTCTCTGAAGAACCCATCTACATCATCACAGAGTTCATGAGCCAAGGTAGCTTACTGGACTTCCTAAAGGACGGGGAAGGAGGGAATCTGAAGCTGCCTCAACTGGTGGATATGGCTGCTCAGatagcGGCAGGCATGGCATATATAGAGCGTATGAACTACATCCATCGTGATCTGCGAGCGGCTAACATTCTGGTCGGGGAAAATCTGGTGTGCAAGATCGCTGACTTTGGTCTGGCCAGACTCATAGAGGACAATGAGTACACAGCCAGACAAGGAGCCAAGTTCCCCATCAAGTGGACAGCTCCTGAAGCAGCTCTATACGGGCGTTTCACCATCAAGTCTGATGTGTGGAGCTTTGGTATCCTGCTCACTGAACTCGTCACAAAAGGACGCGTGCCTTACCCAGgtatgaATAACCGCGAGGTCctggagcaggtggagagaggCTACAGGATGCCCTGTGCGGTGGGTTGTCCTGCCTCCCTCCATGAGCTGATGGTGCAGTGTTGGCGGAGAGAGGCGGACGAGAGACACACCTTTGAATACCTGCAGGGCTTCCTGGAGGACTACTTTACTGCTACTGAACCCCAGTACCAGCCTGGAGAGAACCTGTGAccacgcacatgcacacagacacaagtgtgtacacacacacacacacacacacaacctatacATACTGTAAGCTTTATCTACTATATGTTGCTGTCTGTCAGGGCAGAGCAATCAAACACGAGCTAgaattcttcctctcctcctatctGTGCTCGGCTGCCCAGACCAGCAGAGGAAAGGGACTGTTGTCAGTGTACTATGCCTTAATAGCTTTACTGAGTTACCATGACAACAAGGCTTCGTCTTTAGATGGAGGTTGGgggggtttaaggttagggttagatggggttagggGTCAAGGTTTGTGGGGCTGTAGGGGACCAGTTTGTGCCTAAAATCTTTACTTGTGtaagatgatgatggtgatgacttCACTCCAATGCTTTTTACTCTCTAAGCATCTTTCATGACGTCAAAGTGGATTTTCTTTCTGCAACCTTTCTTAAACCTGATATTGACAACCCcggt

Function

NR:

description
proto-oncogene tyrosine-protein kinase Yrk-like isoform X2

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953130.1 False 3441 mRNA 0.49 14 52398658 52428130
XM_021572427.2 False 2894 mRNA 0.50 13 52399047 52428128
XM_021572428.2 True 2886 mRNA 0.50 13 52399047 52428129

Neighbor

gene id symbol gene type direction distance location
LOC110496491 LOC106588724 coding downstream 1680 52352725 ~ 52396978 (-)
LOC110496489 LOC106588773 coding downstream 46741 52331974 ~ 52351917 (-)
LOC110496488 LOC106588772 coding downstream 67097 52317137 ~ 52331561 (-)
LOC110519830 LOC106588776 coding downstream 116783 52271271 ~ 52281875 (-)
sytl1 LOC106588777 coding downstream 129340 52261367 ~ 52269318 (-)
sesn2 LOC106588768 coding upstream 95 52428225 ~ 52436609 (-)
matn1 matn1 coding upstream 12976 52441106 ~ 52455251 (-)
LOC110496494 LOC106588766 coding upstream 34239 52462369 ~ 52472077 (-)
LOC118941185 sdc3 coding upstream 45080 52473210 ~ 52511642 (-)
pum1 pum1 coding upstream 86555 52514685 ~ 52551627 (-)
G1561239 NA non-coding downstream 48355 52347881 ~ 52350303 (-)
G1561233 NA non-coding downstream 88125 52310308 ~ 52310533 (-)
G1561230 NA non-coding downstream 90993 52307422 ~ 52307665 (-)
G1561290 NA non-coding upstream 180973 52609103 ~ 52612099 (-)
G1561366 NA non-coding upstream 204551 52632681 ~ 52635148 (-)
G1561367 NA non-coding upstream 205358 52633488 ~ 52634262 (-)
G1561285 NA non-coding upstream 212187 52640317 ~ 52641070 (-)
G1561368 NA non-coding upstream 220611 52648741 ~ 52648999 (-)
G1561167 NA other downstream 148169 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 215451 52179320 ~ 52240648 (-)
G1560339 NA other downstream 943373 51381731 ~ 51455285 (-)
LOC110496463 LOC106588703 other downstream 1184514 51213151 ~ 51214398 (-)
G1561279 NA other upstream 216859 52644989 ~ 52647777 (-)
G1562762 NA other upstream 1170520 53598650 ~ 53602694 (-)
tomm7 NA other upstream 1193770 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1324276 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1446280 53874410 ~ 53875592 (-)

Expression


Co-expression Network