snrnp40 (LOC106588762)


Basic Information

Item Value
gene id snrnp40
gene name LOC106588762
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52558640 ~ 52563739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953145.1
cagagcccgaacttgaacccgatctaatatatctggagagacctaaaaatagctgtgcagcaatgctccccatccaatctgaccacttgagaggatctgtagagaagaatgtgTCACGAACTGGCTCAAAGCCAggaacaaaaagggagacaacatggagataacaaaaatatatttaatatctCAAGTAACCTATATACAATAAACATTGGTGTATGTAGTCAGTAGTGTGAGTGGTTGCGTGCGTAGATGTGATAATgaagggtgttgaaaggtgccaacgcAAACAAACAAAACGGACACGCAAAAAAATGCAACAACCAAAAAcagtgtgtgtctgcatggagaatTTCttcaatgaatggggaagagatgtatttatcccgggacacacccgggcccaggtgtgtcccatttctCTGACGACCCTCCCGGATCCGCCCACcaacatcctattaaggaaaacgAGGAGAAAGAATAAGGCAGACGGAGTGAGAGGGTCGTCacaaatgggagaaactctccaaatacagCTGTGGGACATCCGTAAGAAGGGGGCGGTCCATACGTTCCAAAACACCTACCAGGTGTTGGCTGTCACATTCAACGACACCAGCGACCAGATCCTGTCTGGGGGCATCGACAATGACATCAAGGTGTGGGACCTGAGGCAGAATAAGCTGGTCTACAGTATGCATGGTCATGGTGATTCTCTGACTGGACTCAGCCTGAGCTCAGAGGGGTCCTACCTCCTTTCCAACTCCATGGACAacacagTGCGTATTTGGGACGTCCGTCCGTTCGCTCCCAAGGAGAGGTGTGTGAAGATATTCCAGGGGAACATTCACAACTTTGAGAAGAACCTTCTGAGGTGTTCCTGGTCCGCTGACGGCAGCAAGATTGCAGCAGGCTCAGCCGACAGgtttGTATATGTGTGGGACACCACGTCTCGTAGGATCCTGTACAAGCTGCCAGGCCATGCTGGGTCAGTCAATGAGGTCGCCTTCCACCCTGAGGAGCCTATTGTCCTCTCTGGTGCCAGTGACAAGAGACTCTACATGGGAGAGATTCAGTAGgactgttgtttgtgtgtgtgtgtgtgagagagagagaagggtaattgtgtgtacatctgagTGTGTTATTTCTGCTCCGTTGTGTGAATGATCAGTACTCTGTACTTTTTTATGCTTCTTTatttaataatgagacagtatttTGAGTTTATAATTTCCAGTCACAACAACCAACACCTGtaattttttttgtatttctctTAATAAACTACTTCTGGAAGAA
>XM_036953146.1
TGTTCATTGAGTTGTTAAACCATGATTGAGCCAAAGAAGAGACCGGGGGACATGGCTTTGGTTCCTGCCGGCGGAGTCAAGAGGTCCAGGACGGAGCTGTTCGCCGCGGCACAGTCACAACAGCTCGTGGCCATGCAGCTCCAGCCTGCAGGCTCCCATCATGCTGATGTGTGGCCATGAGGGAGAGGTCTACTGCTGCAAGTTCCATCCCAATGGAGCCACCTTGGCCTCCTCTGGCTATGACAGGCTCATCTCTGTGGGACATCCGTAAGAAGGGGGCGGTCCATACGTTCCAAAACACCTACCAGGTGTTGGCTGTCACATTCAACGACACCAGCGACCAGATCCTGTCTGGGGGCATCGACAATGACATCAAGGTGTGGGACCTGAGGCAGAATAAGCTGGTCTACAGTATGCATGGTCATGGTGATTCTCTGACTGGACTCAGCCTGAGCTCAGAGGGGTCCTACCTCCTTTCCAACTCCATGGACAacacagTGCGTATTTGGGACGTCCGTCCGTTCGCTCCCAAGGAGAGGTGTGTGAAGATATTCCAGGGGAACATTCACAACTTTGAGAAGAACCTTCTGAGGTGTTCCTGGTCCGCTGACGGCAGCAAGATTGCAGCAGGCTCAGCCGACAGgtttGTATATGTGTGGGACACCACGTCTCGTAGGATCCTGTACAAGCTGCCAGGCCATGCTGGGTCAGTCAATGAGGTCGCCTTCCACCCTGAGGAGCCTATTGTCCTCTCTGGTGCCAGTGACAAGAGACTCTACATGGGAGAGATTCAGTAGgactgttgtttgtgtgtgtgtgtgtgagagagagagaagggtaattgtgtgtacatctgagTGTGTTATTTCTGCTCCGTTGTGTGAATGATCAGTACTCTGTACTTTTTTATGCTTCTTTatttaataatgagacagtatttTGAGTTTATAATTTCCAGTCACAACAACCAACACCTGtaattttttttgtatttctctTAATAAACTACTTCTGGAAGAA
>XM_036953147.1
TACTTGTGTCGAAAGCGGTTTGTTGAAAGAAGTTAATTTATCCAAGTCGATTTCTGTTAAACACCATCGTGTTCATTGAGTTGTTAAACCATGATTGAGCCAAAGAAGAGACCGGGGGACATGGCTTTGGTTCCTGCCGGCGGAGTCAAGAGGTCCAGGACGGAGCTGTTCGCCGCGGCACAGTCACAACAGCTCGTGGCCATGGGCCCTCCCAGCAGCTCCAGCCTGCAGGCTCCCATCATGCTGATGTGTGGCCATGAGGGAGAGGTCTACTGCTGCAAGTTCCATCCCAATGGAGCCACCTTGGCCTCCTCTGGCTATGACAGGCTCATCTCTGTGGGACATCCGTAAGAAGGGGGCGGTCCATACGTTCCAAAACACCTACCAGGTGTTGGCTGTCACATTCAACGACACCAGCGACCAGATCCTGTCTGGGGGCATCGACAATGACATCAAGGTGTGGGACCTGAGGCAGAATAAGCTGGTCTACAGTATGCATGGTCATGGTGATTCTCTGACTGGACTCAGCCTGAGCTCAGAGGGGTCCTACCTCCTTTCCAACTCCATGGACAacacagTGCGTATTTGGGACGTCCGTCCGTTCGCTCCCAAGGAGAGGTGTGTGAAGATATTCCAGGGGAACATTCACAACTTTGAGAAGAACCTTCTGAGGTGTTCCTGGTCCGCTGACGGCAGCAAGATTGCAGCAGGCTCAGCCGACAGgtttGTATATGTGTGGGACACCACGTCTCGTAGGATCCTGTACAAGCTGCCAGGCCATGCTGGGTCAGTCAATGAGGTCGCCTTCCACCCTGAGGAGCCTATTGTCCTCTCTGGTGCCAGTGACAAGAGACTCTACATGGGAGAGATTCAGTAGgactgttgtttgtgtgtgtgtgtgtgagagagagagaagggtaattgtgtgtacatctgagTGTGTTATTTCTGCTCCGTTGTGTGAATGATCAGTACTCTGTACTTTTTTATGCTTCTTTatttaataatgagacagtatttTGAGTTTATAATTTCCAGTCACAACAACCAACACCTGtaattttttttgtatttctctTAATAAACTACTTCTGGAAGAA

Function

NR:

description
U5 small nuclear ribonucleoprotein 40 kDa protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953145.1 False 1299 mRNA 0.46 7 52558640 52561317
XM_036953146.1 False 1020 mRNA 0.50 8 52558640 52563670
XM_036953147.1 True 1100 mRNA 0.50 8 52558640 52563739

Neighbor

gene id symbol gene type direction distance location
nkain1 nkain1 coding downstream 987 52552468 ~ 52557653 (-)
pum1 pum1 coding downstream 7013 52514685 ~ 52551627 (-)
LOC118941185 sdc3 coding downstream 46998 52473210 ~ 52511642 (-)
LOC110496494 LOC106588766 coding downstream 86563 52462369 ~ 52472077 (-)
matn1 matn1 coding downstream 103389 52441106 ~ 52455251 (-)
fabp3 LOC100136763 coding upstream 7593 52571332 ~ 52575201 (-)
arhgap4b LOC100380863 coding upstream 42963 52606702 ~ 52637735 (-)
arpp21 LOC106588747 coding upstream 86132 52649871 ~ 52672721 (-)
LOC110496501 pdcd6ip coding upstream 113682 52677421 ~ 52704871 (-)
ubp1 LOC106588748 coding upstream 148814 52712553 ~ 52728916 (-)
G1561306 NA non-coding downstream 145637 52411530 ~ 52413003 (-)
G1561305 NA non-coding downstream 146260 52411046 ~ 52412380 (-)
LOC110496491 LOC106588724 non-coding downstream 162045 52352725 ~ 52396978 (-)
G1561239 NA non-coding downstream 208337 52347881 ~ 52350303 (-)
LOC110496488 LOC106588772 non-coding downstream 240108 52317137 ~ 52331561 (-)
G1561290 NA non-coding upstream 45364 52609103 ~ 52612099 (-)
G1561366 NA non-coding upstream 68942 52632681 ~ 52635148 (-)
G1561367 NA non-coding upstream 69749 52633488 ~ 52634262 (-)
G1561285 NA non-coding upstream 76578 52640317 ~ 52641070 (-)
G1561368 NA non-coding upstream 85002 52648741 ~ 52648999 (-)
G1561167 NA other downstream 308151 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 375433 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1103355 51381731 ~ 51455285 (-)
LOC110496463 LOC106588703 other downstream 1344496 51213151 ~ 51214398 (-)
G1561279 NA other upstream 81250 52644989 ~ 52647777 (-)
G1562762 NA other upstream 1034911 53598650 ~ 53602694 (-)
tomm7 NA other upstream 1058161 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1188667 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1310671 53874410 ~ 53875592 (-)

Expression


Co-expression Network