zcchc17 (zcchc17)


Basic Information

Item Value
gene id zcchc17
gene name zcchc17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52563530 ~ 52570280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953148.1
ACTTACCATGGCCACGAGCTGTTGTGACTGTGCCGCGGCGAACAGCTCCGTCCTGGACCTCTTGACTCCGCCGGCAGGAACCAAAGCCATGTCCCCCGGTCTCTTCTTTGGCTCAATCATGGTTTAACAACTCAATGAACACGATGGTGTTTAACAGAAATCGACTTGGATAAATTAACTTCTTTCAACAAACCGCTTTCGACACAAGTACGAAGTGAAGAGTGGTCTGAGGTACTTCCAGTTCTCAGGGCGATTGATTGGTTCGCAGCTCCTCTGTTAACGTTGATTGGTTATCATTGTTGTTGACCATGGCCCGTGAACCGGAAGAAAACATCTGAAACAGACTACAAAAATAAATACTCGGCACACAAGGGAGAGAGTTATACTGTGAGTCGCCATCATCATCATGGCAGACTTTGACCATGACCAGCAGGAGCCTGCAGGACTAGATGGCTTGCCAGCCATGTACAGTATTGTGAAGGGAGAGGTGGCTTCTGTACAGACCTACGGAGCCTTCATCAAGATTCCTGGCTACAGGAAGCAGGggtTGGTTCATATCAGTGAGTTGTCAGCCTGTAGGGTTGAGAATGTTGCAGAAGTCGTCGACGTGGGAGAGCAGGTGTGGATCAAGGTCATCGGAAGAGAGATGCGTGATGACAAGGTGAAGCTCTCCTTCTCAATGAAAGCTGTCAATCAAGGAACAGGGAAAGACCTGGACCCCAACAATGTCATAGCAGAgcaggaTGAGCGGAGGCGTAGACAGTTCAAAGATGGTACAGGACGGAGGATCACATTGGAGGCTGTACTCAACACCACCTGCAAGAAGTGTGGCTGCAAAGggcACTTTGCTAAGGACTGTTTCTCGGCCCCGGGGCTGCAGTATGATCTGATACCTGAGGAGGGCGATGATGAGCCTCAGCAGCTACAGAAAGAGCCTATCAACCCCAACCTCATCCCACTCGCAGTCCGCAAAACCCAACCTCCACAGGACTCacacaagaagaagaaaaaggagaaaaaagagaaaaaggagaagaaggggaagaagaagaagaggaagagagagaggaaggagtccgaaagtgacagcagcagcagtggaCCCGGTCAGGCCAAGAGAGGGCGCCATGAcgacagagaggacagaaagaagaAGAAACACAAGAAACACAAGTCCCACAAACACATCTGAGACTGATCTGACGGACTGACACACATACATtgcactaaacacacacaaatcacactgtagacacacatgcacacagtaaAACTGTGAACCTGCACATACACAGCGTAGACTtggttggacacacacacaagttgACGCAACAGTCAGAAGCCCCTCATAGCCCCTTGCCCCTACCGTCTGACACATGCAGATCGATAGAAACCTGATAGGTGTTAGCAATATGGCAGCTTCCCTGAGCCCATCGGAAAGTTAAGTATATATTGCACCTATCCAGTTCCCTCAGATCTACCTTTAACACTGAAGAGGTTAGTGTTGTTTTCAGGATGACAGTATAGGTGTCTCAGATCCCACAACACCTGGAGTTAACATCTCAGGAACCATATCAAGATGTTGTAATCTGTGCAGGCCTGTGCTGTGTTAGTAATATGTGTATCTGGAACCTGTCCTCACTGGTCAGGTTAAACGcatgacatacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatctttgtttgatggggttgaggtcaggactctgtgcaggctagtaaagttcttccacaacgatgTCGACAaaccatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagattgtcattgtatgctgtagtgttaagatttccctacactggaactaaggggcctagaccgaaCCATAAACTGTCCCAGATCATTAAtactcctccaccaaaccttacagttggtactatgcattagggcaggtagcgCTCTTCTGGCGTCTGCCAaccccagatttgtctgtcggactgccagatggtgatgcgtgattcttcactccagagaaggcgtttccactgctccaaagtccaatggtggcgagatttccaacactctaaccgacgcttggcattgcgcatggtgatctttggcCTGTGTGCaactgctcagccatggaaacccatttcattaagctcttgacaaacagttcttgtgctgacgttggttccaaaggcagtttggaactcgatagtgagtgttgcaaccgaggacagatgatttttatgcgcTACACGCTTCCACACTCCGTGGTCCCGCTCTTCAgaaaggccattttactgccaatctttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaagaggtgtggctgaagtagccgaatccactcatttgaaggggtgtccacatacttttgtatatatatagtgtacatacatcaaagcaacacacacaggaagtggtAAAGCCGTAAAGAAGAAGTGTATATGTGTTACAGGAGATTCCCCAGAAACACGCCACTTCGATACAGCTATGACCGGAAGTtactttttcgtagcaggttaggagaataaggttagggttagcaaaaATGCTCTCATAACCTTCTACAAAAAGTCAAGGTCATAGCTGTATGGAAGTGCTGTGTTTTTAGGGAGTCCCTGTCAAACATACAGGAACCTCATGCTTGCGATATCCTGTTGGTACACGCCCCTTATTGTGTGTGAACACGTGTACTCTGCAACCATGTCATTgaagatgtgtgtttgtgtgcaaagGAGTTTGTGTAACATGGTCCATATTCCTGTATGCAAACTATGAtggtctttattaaagatttaaaCTGTCAAGTAA
>XM_036953149.1
GAAGAAAACATCTGAAACAGACTACAAAAATAAATACTCGGCACACAAGACATGGATGTTTAAAAGACTTGGTGTCTTCCAAGTCAGGAATTGAGAAAGTATCGCCAAGTTAAGGGAGAGAGTTATACTGTGAGTCGCCATCATCATCATGGCAGACTTTGACCATGACCAGCAGGAGCCTGCAGGACTAGATGGCTTGCCAGCCATGTACAGTATTGTGAAGGGAGAGGTGGCTTCTGTACAGACCTACGGAGCCTTCATCAAGATTCCTGGCTACAGGAAGCAGGggtTGGTTCATATCAGTGAGTTGTCAGCCTGTAGGGTTGAGAATGTTGCAGAAGTCGTCGACGTGGGAGAGCAGGTGTGGATCAAGGTCATCGGAAGAGAGATGCGTGATGACAAGGTGAAGCTCTCCTTCTCAATGAAAGCTGTCAATCAAGGAACAGGGAAAGACCTGGACCCCAACAATGTCATAGCAGAgcaggaTGAGCGGAGGCGTAGACAGTTCAAAGATGGTACAGGACGGAGGATCACATTGGAGGCTGTACTCAACACCACCTGCAAGAAGTGTGGCTGCAAAGggcACTTTGCTAAGGACTGTTTCTCGGCCCCGGGGCTGCAGTATGATCTGATACCTGAGGAGGGCGATGATGAGCCTCAGCAGCTACAGAAAGAGCCTATCAACCCCAACCTCATCCCACTCGCAGTCCGCAAAACCCAACCTCCACAGGACTCacacaagaagaagaaaaaggagaaaaaagagaaaaaggagaagaaggggaagaagaagaagaggaagagagagaggaaggagtccgaaagtgacagcagcagcagtggaCCCGGTCAGGCCAAGAGAGGGCGCCATGAcgacagagaggacagaaagaagaAGAAACACAAGAAACACAAGTCCCACAAACACATCTGAGACTGATCTGACGGACTGACACACATACATtgcactaaacacacacaaatcacactgtagacacacatgcacacagtaaAACTGTGAACCTGCACATACACAGCGTAGACTtggttggacacacacacaagttgACGCAACAGTCAGAAGCCCCTCATAGCCCCTTGCCCCTACCGTCTGACACATGCAGATCGATAGAAACCTGATAGGTGTTAGCAATATGGCAGCTTCCCTGAGCCCATCGGAAAGTTAAGTATATATTGCACCTATCCAGTTCCCTCAGATCTACCTTTAACACTGAAGAGGTTAGTGTTGTTTTCAGGATGACAGTATAGGTGTCTCAGATCCCACAACACCTGGAGTTAACATCTCAGGAACCATATCAAGATGTTGTAATCTGTGCAGGCCTGTGCTGTGTTAGTAATATGTGTATCTGGAACCTGTCCTCACTGGTCAGGTTAAACGcatgacatacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatctttgtttgatggggttgaggtcaggactctgtgcaggctagtaaagttcttccacaacgatgTCGACAaaccatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagattgtcattgtatgctgtagtgttaagatttccctacactggaactaaggggcctagaccgaaCCATAAACTGTCCCAGATCATTAAtactcctccaccaaaccttacagttggtactatgcattagggcaggtagcgCTCTTCTGGCGTCTGCCAaccccagatttgtctgtcggactgccagatggtgatgcgtgattcttcactccagagaaggcgtttccactgctccaaagtccaatggtggcgagatttccaacactctaaccgacgcttggcattgcgcatggtgatctttggcCTGTGTGCaactgctcagccatggaaacccatttcattaagctcttgacaaacagttcttgtgctgacgttggttccaaaggcagtttggaactcgatagtgagtgttgcaaccgaggacagatgatttttatgcgcTACACGCTTCCACACTCCGTGGTCCCGCTCTTCAgaaaggccattttactgccaatctttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaagaggtgtggctgaagtagccgaatccactcatttgaaggggtgtccacatacttttgtatatatatagtgtacatacatcaaagcaacacacacaggaagtggtAAAGCCGTAAAGAAGAAGTGTATATGTGTTACAGGAGATTCCCCAGAAACACGCCACTTCGATACAGCTATGACCGGAAGTtactttttcgtagcaggttaggagaataaggttagggttagcaaaaATGCTCTCATAACCTTCTACAAAAAGTCAAGGTCATAGCTGTATGGAAGTGCTGTGTTTTTAGGGAGTCCCTGTCAAACATACAGGAACCTCATGCTTGCGATATCCTGTTGGTACACGCCCCTTATTGTGTGTGAACACGTGTACTCTGCAACCATGTCATTgaagatgtgtgtttgtgtgcaaagGAGTTTGTGTAACATGGTCCATATTCCTGTATGCAAACTATGAtggtctttattaaagatttaaaCTGTCAAGTAA
>XM_036953150.1
ACAAGGTAGCTATAATATATAATAGTGTTTATATAAACGTGTGTAGATGCGGATTAAGATTTGATTGCTACATATCTCCCTATAAGAAGTGTACATACGTATATTTGCCCCTAAGGTAGGGCAAGCTAACAACGCCAAGGCTACTAGCCATAGGCTATATAAACTCGCTAGCCTAGCTAGCCAGCCCATCAATCTAGTGCTTAAAGACAGGAAAAGGGAGAGAGTTATACTGTGAGTCGCCATCATCATCATGGCAGACTTTGACCATGACCAGCAGGAGCCTGCAGGACTAGATGGCTTGCCAGCCATGTACAGTATTGTGAAGGGAGAGGTGGCTTCTGTACAGACCTACGGAGCCTTCATCAAGATTCCTGGCTACAGGAAGCAGGggtTGGTTCATATCAGTGAGTTGTCAGCCTGTAGGGTTGAGAATGTTGCAGAAGTCGTCGACGTGGGAGAGCAGGTGTGGATCAAGGTCATCGGAAGAGAGATGCGTGATGACAAGGTGAAGCTCTCCTTCTCAATGAAAGCTGTCAATCAAGGAACAGGGAAAGACCTGGACCCCAACAATGTCATAGCAGAgcaggaTGAGCGGAGGCGTAGACAGTTCAAAGATGGTACAGGACGGAGGATCACATTGGAGGCTGTACTCAACACCACCTGCAAGAAGTGTGGCTGCAAAGggcACTTTGCTAAGGACTGTTTCTCGGCCCCGGGGCTGCAGTATGATCTGATACCTGAGGAGGGCGATGATGAGCCTCAGCAGCTACAGAAAGAGCCTATCAACCCCAACCTCATCCCACTCGCAGTCCGCAAAACCCAACCTCCACAGGACTCacacaagaagaagaaaaaggagaaaaaagagaaaaaggagaagaaggggaagaagaagaagaggaagagagagaggaaggagtccgaaagtgacagcagcagcagtggaCCCGGTCAGGCCAAGAGAGGGCGCCATGAcgacagagaggacagaaagaagaAGAAACACAAGAAACACAAGTCCCACAAACACATCTGAGACTGATCTGACGGACTGACACACATACATtgcactaaacacacacaaatcacactgtagacacacatgcacacagtaaAACTGTGAACCTGCACATACACAGCGTAGACTtggttggacacacacacaagttgACGCAACAGTCAGAAGCCCCTCATAGCCCCTTGCCCCTACCGTCTGACACATGCAGATCGATAGAAACCTGATAGGTGTTAGCAATATGGCAGCTTCCCTGAGCCCATCGGAAAGTTAAGTATATATTGCACCTATCCAGTTCCCTCAGATCTACCTTTAACACTGAAGAGGTTAGTGTTGTTTTCAGGATGACAGTATAGGTGTCTCAGATCCCACAACACCTGGAGTTAACATCTCAGGAACCATATCAAGATGTTGTAATCTGTGCAGGCCTGTGCTGTGTTAGTAATATGTGTATCTGGAACCTGTCCTCACTGGTCAGGTTAAACGcatgacatacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatctttgtttgatggggttgaggtcaggactctgtgcaggctagtaaagttcttccacaacgatgTCGACAaaccatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagattgtcattgtatgctgtagtgttaagatttccctacactggaactaaggggcctagaccgaaCCATAAACTGTCCCAGATCATTAAtactcctccaccaaaccttacagttggtactatgcattagggcaggtagcgCTCTTCTGGCGTCTGCCAaccccagatttgtctgtcggactgccagatggtgatgcgtgattcttcactccagagaaggcgtttccactgctccaaagtccaatggtggcgagatttccaacactctaaccgacgcttggcattgcgcatggtgatctttggcCTGTGTGCaactgctcagccatggaaacccatttcattaagctcttgacaaacagttcttgtgctgacgttggttccaaaggcagtttggaactcgatagtgagtgttgcaaccgaggacagatgatttttatgcgcTACACGCTTCCACACTCCGTGGTCCCGCTCTTCAgaaaggccattttactgccaatctttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaagaggtgtggctgaagtagccgaatccactcatttgaaggggtgtccacatacttttgtatatatatagtgtacatacatcaaagcaacacacacaggaagtggtAAAGCCGTAAAGAAGAAGTGTATATGTGTTACAGGAGATTCCCCAGAAACACGCCACTTCGATACAGCTATGACCGGAAGTtactttttcgtagcaggttaggagaataaggttagggttagcaaaaATGCTCTCATAACCTTCTACAAAAAGTCAAGGTCATAGCTGTATGGAAGTGCTGTGTTTTTAGGGAGTCCCTGTCAAACATACAGGAACCTCATGCTTGCGATATCCTGTTGGTACACGCCCCTTATTGTGTGTGAACACGTGTACTCTGCAACCATGTCATTgaagatgtgtgtttgtgtgcaaagGAGTTTGTGTAACATGGTCCATATTCCTGTATGCAAACTATGAtggtctttattaaagatttaaaCTGTCAAGTAA

Function

symbol description
zcchc17 Predicted to enable RNA binding activity. Predicted to be involved in RNA stabilization. Predicted to be located in nucleolus. Orthologous to human ZCCHC17 (zinc finger CCHC-type containing 17).

NR:

description
nucleolar protein of 40 kDa

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953148.1 False 2904 mRNA 0.47 7 52563530 52570280
XM_036953149.1 False 2646 mRNA 0.47 8 52563853 52570280
XM_036953150.1 True 2748 mRNA 0.46 7 52563897 52570280

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 217862 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 266310 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 318086 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 402776 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 480060 52036488 ~ 52083470 (+)
dclk3 LOC106588742 coding downstream 30105 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 70957 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 292400 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 336119 52906399 ~ 52918381 (+)
si:ch211-199g17.2 LOC106588746 coding downstream 455136 52996763 ~ 53051271 (+)
G1560964 NA non-coding upstream 9908 52552503 ~ 52553622 (+)
G1560961 pum1 non-coding upstream 43868 52518851 ~ 52519662 (+)
G1560981 NA non-coding upstream 78758 52481579 ~ 52484772 (+)
G1560930 NA non-coding upstream 85623 52474278 ~ 52477907 (+)
G1560932 NA non-coding upstream 89451 52473231 ~ 52474079 (+)
G1561006 NA non-coding downstream 918 52571198 ~ 52607998 (+)
G1561004 NA non-coding downstream 74680 52644960 ~ 52647777 (+)
G1561059 NA non-coding downstream 102145 52672425 ~ 52672735 (+)
G1561062 pdcd6ip non-coding downstream 116368 52686648 ~ 52687158 (+)
G1561019 clasp2 non-coding downstream 176016 52746296 ~ 52750923 (+)
G1560957 NA other upstream 121589 52441146 ~ 52441941 (+)
G1560911 NA other upstream 207695 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 306000 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1927964 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 605442 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 707510 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1148089 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1246884 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1301893 53872173 ~ 53876930 (+)

Expression


Co-expression Network