dclk3 (LOC106588742)


Basic Information

Item Value
gene id dclk3
gene name LOC106588742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52600385 ~ 52606655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953152.1
ATTACATTTTATTCAATTATAATGATATGGTTGGCTTGGCTCCCACATGTTCAGTTCTTCCTGGTTTCTTGATGACATCATCTTTATGCCTGGTCAGGTGACATTGCTGTTGAATCGTAGGAGCGTGGTCTCGTACGAGCAGCTTCTATTGGACGTCTCCGAGGCGCTGGGGTTCCCTCGCTGGCACAGGGCCAGAGTCACACGCCTCTACACACCACACGCACGAGAGGTGCGAGGTGTGTGTGATTTCTTCCGTGGCGAAGCAGCGTTCCTGGCATTGGGAAAGTCTCGTCCAGAGCTCCGGAGTGTCGAGGAGGCCCTGGAGGAGCTGTTTCCACAACATTCCTGTTACCGCAACGACGCACTCCAGGCCTGGGAGAGGAGGTTACAACCTTCACCTGATAAAGCTGCCAAGGCCGACAGCGGATACAGCGAggggacagacatacacacacaccctgacaagGATACACACACAAGCCTCGACacgaacacacagacatacagtgttACATACACACAGGGATGcaacctggacacacacacacatacgcaccaaGACACACTGACACAACCCAATACACACCCCAAAACACtgacacaccacaatacacacccaAACAGGCActccacacacaaaaacaaacacccAACTAGACAGCCCATACACCCTATTCACACACACCTCGACACGGATGCGCACACACATAGACACCCTAACACGCATTCTAACCAACACTCCACACACCCCTCTCACCCCcccaatcaccttcagagggttaAAGTGAAAGTTGCAGCCAGAGAGATTCTCTCCTCACCGATAGGTCCCCCCACCCAGGAGGAGGAGCCCCCTCCTCCACTCTGCAGGAACTGTAAGCCTTCTGAAGGACCCAATCCGAGAGCAGGGAGGGCTCCACTTCCTCCCGTAACCAGGAAGCAAACAGGAAACGGACCAAACAACCAGGAAGTAGAGAAACATCACGTCGGTCCCACCCCACTCCACACTGGACCAATCTGCAGGCTTGATGAGGAGTCCCTCAGCCAATCAGAACCTTCATCCTCAGAGTCTAAACAGGAAGAGGCGAGGACTAAACAGGAAGTGATATTTGACCTCCCATCTGATGGTAGTGATGTCACCCTGTCAGACATTGAGCGTTGCTATGACATTGGCCGCATGGTCGGAGACGGGAACTTTGCTGTTGTGCACGAGTGTCATCGGCGCAACAATGGGGAAGCCTTCGCTGTGAAGATTGTGGAGCACTCAAAGCTCATTGGCCGAGAGCACATGATGCAGAATGAGCTGAGCCTTCTGGGTAGCCTGTCACACCCCCGCGTGGTTCGCCTcttcacacaccaccacacacacacacactcctatctCGTCATGGAGATGGTTGCCGGGGGCGACCTGTTTGAGGCAATCGCGGTCCGTGGGAAGTTTCCAGAAGAGGAGGCAGGGCTGATGGTGTGTGATGTCAGCGAGGCTCTGAGATACATCCACAGCAAGACCATAGTACATAGAGATCTGAAACCTGAAAACCTACTGgTGGAATGCAGTAGTGATGGCGTCAGTAGGTTGAAGCTGGGTGATTTTGGTCTGGCCATGGTTGTAACAGAACCCATCTTCACTGTGTGTGGAACTCCCACCTATGTCGCCCCGGAAATCCTCTCAGAGACAGgGTATGGTCTGCCAGTAGACCTGTGGGCATTGGGAGTGATACTGTACGTCCTTCTCTGTGGGTTCCCTCCGTTCCGGAGCAGAGACCGAGACCAAGGGGAGCTGTTCCAGATGATCAGAGAGGCTCACCTCACCTTCCTGTCACCTTACTGGGATGACATCTCAGACGgagCGCGAGGCCTGGTGAGAGCCTTGCTGCAGGTGGATCCAACAGAAAGACTGACGGCAGCTCAGACTCTTATGCACCCCTGGATTCAGACCACTACTGACCAGTACAGACCAACACAGACCACTACTGACCAGCACAGACCAACACAAATCAGTACTGACCAGTACAGAACAACACAGATCAGTACTGACCAGTACAGACCAACACAGATCAGTACTGACCAGTACAGACCAACCCAGACCACTACTGACCAGTACAGACCAACACAGACCACTACTGACCAGTACAGACCAACACAGATCAGTACTGACCAGCAGAGCCCAGCACAGCCGAGCAAAGGCAAACACAGACATGAACCGATCAGTGCAAACCAGCAGAGCCCAGCAAAGACCAGCACAGAAcactacagaccagtacagaGTCCAACCACAGACCAGTCCCGACCAGCACAGACCGCTACAGAACACCACAGACCAGTACCAACCCCAGACCAACAGCGACCACCACATCCAATCCTCCCAGcgcaccacccacccacccagccagccccATCTCCTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGCCCCATCTCCTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGTCCCATCTCCTCACTCCAGCACCCAGCCAGCCCCATCTTCTCACTCCAGCACTCAGCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGCCCCATCTCCTCACTCCAGCACCCAGCCAGTCCCATCTCCTCACTTCACCACCCAACCAGCCCCATCTCTTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCACCACCCAACCAGCCCCATCTCTTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGCCCCATCTCCTCACTCCAGCACCCAGCCAGTCCCATCTCCTCACTCCACCACCCAGCCAGCCCCATCTCTTCACTCCACCACCCAGCCAGCCCCATCTCCTTACTCCACCACCCAGCCAGCCCCATCTCCTCACTCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGCCCCATCTCCTCACTCCACCACCCAGCCAGTCCCATCTCCTCACTCCAGCACCCAGCCAGCCCCATCTCCTCACTCCACCCCCAAGCAGGACCCATCAACTGCTCCCCAGCCCCCCGGCAGTAGCACCTCTCAACCGCCCCACCCAATTTCCCCACCCTCCATCCTATCCACAGCAACATCCAAACCCAGCTGCCACCCACCTGGCAGAACCCCTCAATCTGCCCTCCCACTCCACCcagtctccatccctccactcacccacccaccctgcCTCCCTCCCAACACCCACCCATTCCCAGCCGAATACccacccagtcccagtcccagcacGCAGTGTCCCACCCCTCAACAGCAACACCCAAGCCCCACTTCCCCTCAACCCATCCTCCTGAATGATGGGTTTCCTGAAACTTTAAACGCTTCTCCAGGAATTGAAAAGATCTGGTATTCTGCACAGACCCTGTTCAGGATTGTGTATCTGGAACTCACCAATTGTCATACACTGATGTTCAGTTCTATTCCAATAAAATAGTCATCAACAACTTTACCATTTAGGTTGTAGTATTTAGTTCAGTAGATTATCTAGCATAACAGATAACTCTAATAGTTTCAATACATGTTTTTTTCTGACAATGTGGTGTATTACACACACTTCCCCTTTGTACTGCACTAACAATAAATAACTTTGAACTGA

Function

NR:

description
serine/threonine-protein kinase DCLK3-like, partial

GO: NA

KEGG:

id description
K17530 DCLK3; doublecortin-like kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953152.1 True 3677 mRNA 0.55 5 52600385 52606655

Neighbor

gene id symbol gene type direction distance location
zcchc17 zcchc17 coding upstream 30105 52563530 ~ 52570280 (+)
LOC110496490 NA coding upstream 254717 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 303165 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 354941 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 439631 52155121 ~ 52160754 (+)
cyhr1 LOC106588755 coding downstream 34582 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 256025 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 299744 52906399 ~ 52918381 (+)
si:ch211-199g17.2 LOC106588746 coding downstream 418761 52996763 ~ 53051271 (+)
LOC110496510 LOC106588740 coding downstream 470374 53077029 ~ 53109904 (+)
G1560964 NA non-coding upstream 46763 52552503 ~ 52553622 (+)
G1560961 pum1 non-coding upstream 80723 52518851 ~ 52519662 (+)
G1560981 NA non-coding upstream 115613 52481579 ~ 52484772 (+)
G1560930 NA non-coding upstream 122478 52474278 ~ 52477907 (+)
G1560932 NA non-coding upstream 126306 52473231 ~ 52474079 (+)
G1561004 NA non-coding downstream 38305 52644960 ~ 52647777 (+)
G1561059 NA non-coding downstream 65770 52672425 ~ 52672735 (+)
G1561062 pdcd6ip non-coding downstream 79993 52686648 ~ 52687158 (+)
G1561019 clasp2 non-coding downstream 139641 52746296 ~ 52750923 (+)
G1561068 NA non-coding downstream 153158 52759813 ~ 52760263 (+)
G1560957 NA other upstream 158444 52441146 ~ 52441941 (+)
G1560911 NA other upstream 244550 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 342855 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 526356 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 1964819 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 569067 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 671135 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1111714 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1210509 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1265518 53872173 ~ 53876930 (+)

Expression


Co-expression Network