cyhr1 (LOC106588755)


Basic Information

Item Value
gene id cyhr1
gene name LOC106588755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52641237 ~ 52644819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953158.1
agtcatCTGATACAACAAAACATTCCACTGATAGCCAATCCGCGATGCAGCCCAGGGACTGGCAAGAAAGGCCATAAcagctactggcaaaatattgaCAGTTTCTCCGAAACTCGGGCTTAGTTTTTTTGTGACCTTGGCTGAGTAACACCAGTAAGGATCGGAAATCCTTAGCGCCGAGCTAGGGTGTAGTGAAGTcggggagaggaagaggcgacCGTCCGGACAGGAGAAAAACAAAGATGGCTGTGTAGTTAGAGAGTAGTCCCAGCGAACTGTCTGAACATATCTCTGCTTTTTCCAAAACTGACACTTCCCGGGGGCCGGTGGATAGTGAGCTGGTACAGGGGTAAAGCCATTAACCGATCAGCCGAACCGGGCAGTTGCTGAACGTCCGCTCACGCGCTGGCACGGCAAATAAAATAATGGTCAACACAAAAACATCTGACGGGGTGTTTTGTTATAGCTAGACAGCGGAGAGAACTGGAGTGTTTTGTGAGCTTGATACCTATAGCCTAGTAGCTAGCTGAATTTCGCTTATCTGCCAACATCGCTAAATATCCATCTACAAAAAACGATAATCAAATAACAATTTAGGATATTCCAGAACGTTACGCGAGGGTTCGTGATTCTAAATTCCAAGCGCGTTATTGCGTAACATTGCCTACGAACAGGCACGCTATCTAGCTAGCCAACTGACCCTGAGCTGGGTGGCTTGGTTTTCCCTTGCCTGTGACGTTAAACCTGCCAGCTAGGTAACATTTGTGACGGGTAGCTAGCTAACGCCTGACAATCACCACCACCCACCATGTCCTCGGTGGAAGAGCGGGGAGAGGTGGGCGTCGCGGCCACCCCAGGCTCCTCCTCAGGCGGCCTGGGTGTTGTGGCGGTGGGGGCAGCCCTGGAGGCAGTCGTCGGGGGGCCGTCTATGCTGGAGGAGGTGAGCATCCGGAGAGGAGAGGGGCTCGGTCCCGAGTCGGATCCGGACGAGCCGCCGCCCAAGAAGCGGATGAGACTGCCGGAGGGAGAGTCGGGAAAGCTGGAAGAGAGGCTGTATTCAGTCCTGTGCTGCACTGTATGCCTAGACCTGCCCAAAGCCTCCGTGTATCAGTGCACCAACGGTCACCTGATGTGTGCTGGCTGTTTCATCCACCTGCTGGCTGACTCTCGTCTGAAAGAGGAGCAGGCCACGTGTCCTAACTGCAGGTGTGAGATCAGTAAGTCCCTGTGTTGTAGGAACCTGGCTGTAGAGAAGGCTGTGAGTGAGCTGCCCACAGACTGCCCCTTCTGTCTCAAACAGTTCCCTCGCTCCAGCCTAGAGAGGCACCAGAGAGAGGAGTGTCAAGACAGGGTGACACAGTGTAAGTACAAGCGGATTGGCTGCCCGTGGAAGGGGCCGTTCCACGAGCTGCCGGCCCACGAGGAGGAGTGCTGCCACCCCACCAAGACTGGCACAGAGCTGATGGGCATCCTGGGGGAGATGGACCAGAGCCACCGCAGAGAACTAACCCTTTACAACTCTATATTCTCCCTGCTCTGTTACGAGAAGATTGGCTTCACAGGTAGGCTAGAGGTCCAGTTCCGGCCGTACCGCACCGATGACTTTATAACCCGTCTGTACTATGAGACTCCTCGTTTCACCGTGTTGAACCAAACCTGGGTTCTGAAGGCCAGGGTCAACGACTCTGAACGCAACCCTAACCTCTCCTGCAAACGCACCCTCTCCTTCCAGCTCATCCTCAAGAGCAAGgtgAACTCCGCTATAGAGTGTTCCTTCCTGCTGTTGAAAGGTCCGTACGATGACGTGAGGATCAAGCCTGTGATCCACCACCACGCGTTCAGCAACGACACCAACGAGACAGACTACGTCCCCCTGCCCATCACCGACTCTGTGGAGTGTAACAAACTACTGGCTGCCAAGAACATCAACCTTCGACTCTTCATCTTCCAGATCCAGAaatagacgggggggggggggggggggagaaag
>XM_036953159.1
catCTGATACAACAAAACATTCCACTGATAGCCAATCCGCGATGCAGCCCAGGGACTGGCAAGAAAGGCCATAAcagctactggcaaaatattgaCAGTTTCTCCGAAACTCGGGCTTAGTTTTTTTGTGACCTTGGCTGAGTAACACCAGTAAGGATCGGAAATCCTTAGCGCCGAGCTAGGGTGTAGTGAAGTcggggagaggaagaggcgacCGTCCGGACAGGAGAAAAACAAAGATGGCTGTGTAGTTAGAGAGTAGTCCCAGCGAACTGTCTGAACATATCTCTGCTTTTTCCAAAACTGACACTTCCCGGGGGCCGGTGGATAGTGAGCTGGTACAGGGGTAAAGCCATTAACCGATCAGCCGAACCGGGCAGTTGCTGAACGTCCGCTCACGCGCTGGCACGGCAAATAAAATAATGGTCAACACAAAAACATCTGACGGGGTGTTTTGTTATAGCTAGACAGCGGAGAGAACTGGAGTGTTTTGTGAGCTTGATACCTATAGCCTAGTAGCTAGCTGAATTTCGCTTATCTGCCAACATCGCTAAATATCCATCTACAAAAAACGATAATCAAATAACAATTTAGGATATTCCAGAACGTTACGCGAGGGTTCGTGATTCTAAATTCCAAGCGCGTTATTGCGTAACATTGCCTACGAACAGGCACGCTATCTAGCTAGCCAACTGACCCTGAGCTGGGTGGCTTGGTTTTCCCTTGCCTGTGACGTTAAACCTGCCAGCTAGGTAACATTTGTGACGGGTAGCTAGCTAACGCCTGACAATCACCACCACCCACCATGTCCTCGGTGGAAGAGCGGGGAGAGGTGGGCGTCGCGGCCACCCCAGGCTCCTCCTCAGGCGGCCTGGGTGTTGTGGCGGTGGGGGCAGCCCTGGAGGCAGTCGTCGGGGGGCCGTCTATGCTGGAGGAGGTGAGCATCCGGAGAGGAGAGGGGCTCGGTCCCGAGTCGGATCCGGACGAGCCGCCGCCCAAGAAGCGGATGAGACTGCCGGAGGGAGAGTCGGGAAAGCTGGAAGAGAGGCTGTATTCAGTCCTGTGCTGCACTGTATGCCTAGACCTGCCCAAAGCCTCCGTGTATCAGTGCACCAACGGTCACCTGATGTGTGCTGGCTGTTTCATCCACCTGCTGGCTGACTCTCGTCTGAAAGAGGAGCAGGCCACGTGTCCTAACTGCAGGTGTGAGATCAGTAAGTCCCTGTGTTGTAGGAACCTGGCTGTAGAGAAGGCTGTGAGTGAGCTGCCCACAGACTGCCCCTTCTGTCTCAAACAGTTCCCTCGCTCCAGCCTAGAGAGGCACCAGAGAGAGGAGTGTCAAGACAGGGTGACACAGTGTAAGTACAAGCGGATTGGCTGCCCGTGGAAGGGGCCGTTCCACGAGCTGCCGGCCCACGAGGAGGAGTGCTGCCACCCCACCAAGACTGGCACAGAGCTGATGGGCATCCTGGGGGAGATGGACCAGAGCCACCGCAGAGAACTAACCCTTTACAACTCTATATTCTCCCTGCTCTGTTACGAGAAGATTGGCTTCACAGAGGTCCAGTTCCGGCCGTACCGCACCGATGACTTTATAACCCGTCTGTACTATGAGACTCCTCGTTTCACCGTGTTGAACCAAACCTGGGTTCTGAAGGCCAGGGTCAACGACTCTGAACGCAACCCTAACCTCTCCTGCAAACGCACCCTCTCCTTCCAGCTCATCCTCAAGAGCAAGgtgAACTCCGCTATAGAGTGTTCCTTCCTGCTGTTGAAAGGTCCGTACGATGACGTGAGGATCAAGCCTGTGATCCACCACCACGCGTTCAGCAACGACACCAACGAGACAGACTACGTCCCCCTGCCCATCACCGACTCTGTGGAGTGTAACAAACTACTGGCTGCCAAGAACATCAACCTTCGACTCTTCATCTTCCAGATCCAGAaatagacgggggggggggggggggggagaaag

Function

NR:

description
cysteine and histidine-rich protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953158.1 False 1990 mRNA 0.54 6 52641237 52644819
XM_036953159.1 True 1978 mRNA 0.54 6 52641240 52644819

Neighbor

gene id symbol gene type direction distance location
dclk3 LOC106588742 coding upstream 34582 52600385 ~ 52606655 (+)
zcchc17 zcchc17 coding upstream 70957 52563530 ~ 52570280 (+)
LOC110496490 NA coding upstream 295569 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 344017 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 395793 52235397 ~ 52245444 (+)
susd5 LOC106588743 coding downstream 217861 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 261580 52906399 ~ 52918381 (+)
si:ch211-199g17.2 LOC106588746 coding downstream 380597 52996763 ~ 53051271 (+)
LOC110496510 LOC106588740 coding downstream 432210 53077029 ~ 53109904 (+)
LOC118941187 NA coding downstream 477293 53122112 ~ 53128537 (+)
G1561006 NA non-coding upstream 33239 52571198 ~ 52607998 (+)
G1560964 NA non-coding upstream 87615 52552503 ~ 52553622 (+)
G1560961 pum1 non-coding upstream 121575 52518851 ~ 52519662 (+)
G1560981 NA non-coding upstream 156465 52481579 ~ 52484772 (+)
G1560930 NA non-coding upstream 163330 52474278 ~ 52477907 (+)
G1561004 NA non-coding downstream 141 52644960 ~ 52647777 (+)
G1561059 NA non-coding downstream 27606 52672425 ~ 52672735 (+)
G1561062 pdcd6ip non-coding downstream 41829 52686648 ~ 52687158 (+)
G1561019 clasp2 non-coding downstream 101477 52746296 ~ 52750923 (+)
G1561068 NA non-coding downstream 114994 52759813 ~ 52760263 (+)
G1560957 NA other upstream 199296 52441146 ~ 52441941 (+)
G1560911 NA other upstream 285402 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 383707 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 567208 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 2005671 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 530903 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 632971 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1073550 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1172345 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1227354 53872173 ~ 53876930 (+)

Expression


Co-expression Network