LOC110496501 (pdcd6ip)


Basic Information

Item Value
gene id LOC110496501
gene name pdcd6ip
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52677421 ~ 52704871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572437.2
AACGTCTTCTGACGTTTGCAGCAGAATCCAGGAAGTGAGGAGTCGCTTGTTGTTTTTGCCGATTGATAGTCctttcacattttatttgttaCTTTTCGCGGGCCAAAAATGGCGACTTTTATTTCTGTCCCGTTAAAGAAGTCGTCTGAAGTCGAACTAGTTAAACCGCTCTCGAAATTCGTTACGGCGACATACCCAACGGGCGAGGATCAAGCTGAGTATATCCGATCCGTGGAGGAGTTGAACAAGCTGCGCAAGAGTGCTCTGGGGAGGCCGCTCGACAAACACGAAAGCTCGCTGGAAATCCTCCTGAGGTATTATGATCAGCTGTGTGCCGTGGAGCCAAAGTTTCCCTTCTCTGAAAACCAGCTGTGTCTAACCTTCACATGGAAAGATGCCTTTGATAAGGGCTCACTGTTCGGGGGCTCAGTCAAACTAGccCTGGCCAGTCTGGGCTATGAGAAGACATGTGTGTTGTTCAATGGAGCAGCGTTGGCAAGTCAGATCGCTTCAGAACAAAACCTGGACAGCGATGAAGGACTGAAGGCCGCAGCCAAATACTACCAGttGGCAAGTGGAGCATTTGGTCACATTAAGGACACAGTGCTGTCGGCTCTGAACAGAGAGCCTACAATGGACATTTCTCCTGAGACCGTAGGAACCCTCAGTCTCATCATGCTGGCTCAGGCACAGGAAGTCTTCTTTCTCAAGGCTACTTCAGATAAGATGAAGGACGCCATCATCGCTAAACTGGCCAATCAGGCGGCAGATTTCTACAGCGATGCCTTCAAGCAGTGTCAGTACAAAGAGAACCTgcccaagTGTATTTATTTCCAGGAGGTGTTGCCGGTGCTGGCAGCTAAACACTGCATCATGCAGGCCAACGCTGAGCTACACCAGTCTATCCTCGCCAAGCAGAAGAAACACTTTGGGGAGGAGATCGCTCGCCTGcagCATGCTTCAGAGCTGGTGAAGACGGTAGCGTCTCGCTATGATGAGTACGTCAGTGTGAAAGACCTTAGTGATAAGATCAGCCGCGCTCTGACCGCAGCTAAGAAGGACAACGACTTCATCTACCACGACCGCGTCCCTGAGGTCAAAGACCTGGAACACATCGGCAAGGCAGCGCTGGTCAAGGCTACCACCATCACACCTCCGCTCAGCGCCAAGTTCACTGaCTTGTTTGAGAAGATGGTGCCCATGGCTGTGCAGCAGAGTATGAGTGTGTACAGCCAGAGGAAGGCTGAGACCGTCAACAGACTGGTAGGAACCATGAGGGAAGCTACTAACCTCTGCAACGGTGTCCTGGCATCTCTGAACCTGCCTGCGGCTCTGGAGGACCTGTCTGGAGATTCTATCCCACAATCCATTATTGAAAAGGCCCATGCCATCGTCCAGCAGGGGGGGCTGCAGAGCATAGAGCAGCTGATCAGAGACCTGCCGGAACTACTGACACGCAACAGAGAGATCCTGGatgagTCTCTGAAGATGCTGGATGATGAGGAGTCGACAGACAGCGAGCTGAGATCCAAGTTCAGCCAACGCTGGAACAGAACTCCCTCTGGAGACCTCTACAAACCACTCAGAGCggAGGGGGGTAACTTCCGTAGCGTGTTGGACAAGGCAGTGCAGGCTGACCAGGTGGTCAGGGAGCGTTATAATGCACACTGTGAGATGATCGCTCTCCTCTGTAAACCTGAGGCTGAACTCACCGCTGCCATACCTTCAGCCAACCCTGCTAAGACATTGCAGGGCAGCGAGgttGTGAGTGTGTTGCGTTCCCAGCTGTCCCAGCTagaggtggtgaagagagagagggaggtgctgGAGACGGAGATTAAGGGCGTGACCTTTGACATGTCCTCCAGCTTCCTGACGGCTCTGGCTCAGGACGGGGCCATCAATGAGGAGGCACTGTCAATGAGCCAGCTGGACCAATCATACGGCAGCTACAGCCAGAGGGTTCAAGCCAGCCTCCGCTCTCAGGAAGAGCTGTTGGGCAACGTGCAGGCATCTCACCAGGAGTTCTCCAGTCTGAAGCAGTCCAACTCTGAGGCTAATGATCGTGAGGAGGTGTTGAAGAAGCTGGCCTCGGCCCACGACAGCTACGTTGAGATCACCAGCAACCTCAGAGAGGGCACCAAGTTCTACAATGACCTCACCGAGATCCTGCTGAAGTTCCAGAACAAGTGCAGTGACATCGTCTTCGCCCGCAAGACAGAACGGGATGAACTGCTGAAGGATTTGCAGCAGAGCATCGCCAGGGAGCCCAGTGCCCCATCCTTCTCTGTCCCCGCCTACCAGACTAACCCCACCCCCACCGCCACTGGACCAACCCCCGCACCAAGGACTGTCTTCCAGCCTCAGCAGCCCCAGGCGAAGGCCCAGCCTCCCGAGCGGCCCCCTCCCCCTGCCTTCACCCCCCAGGCCGCCTCCGCACCAGGCAACCCTCCCAGTAACCAGCCTCAACCAGTAAACCCCCCACCTATGGCCCCTCCCTCACAGGCCCAGGGACCGCCTTACCCCACATACCAGGGATACCCCGGGTATGCCTACCAGATGCCTATGGGTTATAACCCGTATGCAGCGTACGGCCAGTACAACATGCCCCCAACTATGCAGCCTAACATGCAGCCCTACATCCCCTATCAGCAGGCCCCAGCACCCGGACAGGGGGGCTACCCTGGGGTCCCCCCCACACAGCAGCACCCCTACACCTACCAACAGCAGCCCCAGCAACCACCACCACAGCCATACTACCCACAACAATAActactctctcactcctctcctccatccctctcctctgctATCGCTACTCCGACCGACAGCAGAAACCATGCTACTACGCCCAGCAATAactcctcaatctctctctctctctctcccttcttcctctgctcttccttcttctcttccctccctcctctaccttccctccctcctctaccttccctccctcctctaccttccctccctcctctacctt
>XM_021572438.2
AACGTCTTCTGACGTTTGCAGCAGAATCCAGGAAGTGAGGAGTCGCTTGTTGTTTTTGCCGATTGATAGTCctttcacattttatttgttaCTTTTCGCGGGCCAAAAATGGCGACTTTTATTTCTGTCCCGTTAAAGAAGTCGTCTGAAGTCGAACTAGTTAAACCGCTCTCGAAATTCGTTACGGCGACATACCCAACGGGCGAGGATCAAGCTGAGTATATCCGATCCGTGGAGGAGTTGAACAAGCTGCGCAAGAGTGCTCTGGGGAGGCCGCTCGACAAACACGAAAGCTCGCTGGAAATCCTCCTGAGGTATTATGATCAGCTGTGTGCCGTGGAGCCAAAGTTTCCCTTCTCTGAAAACCAGCTGTGTCTAACCTTCACATGGAAAGATGCCTTTGATAAGGGCTCACTGTTCGGGGGCTCAGTCAAACTAGccCTGGCCAGTCTGGGCTATGAGAAGACATGTGTGTTGTTCAATGGAGCAGCGTTGGCAAGTCAGATCGCTTCAGAACAAAACCTGGACAGCGATGAAGGACTGAAGGCCGCAGCCAAATACTACCAGttGGCAAGTGGAGCATTTGGTCACATTAAGGACACAGTGCTGTCGGCTCTGAACAGAGAGCCTACAATGGACATTTCTCCTGAGACCGTAGGAACCCTCAGTCTCATCATGCTGGCTCAGGCACAGGAAGTCTTCTTTCTCAAGGCTACTTCAGATAAGATGAAGGACGCCATCATCGCTAAACTGGCCAATCAGGCGGCAGATTTCTACAGCGATGCCTTCAAGCAGTGTCAGTACAAAGAGAACCTgcccaagTGTATTTATTTCCAGGAGGTGTTGCCGGTGCTGGCAGCTAAACACTGCATCATGCAGGCCAACGCTGAGCTACACCAGTCTATCCTCGCCAAGCAGAAGAAACACTTTGGGGAGGAGATCGCTCGCCTGcagCATGCTTCAGAGCTGGTGAAGACGGTAGCGTCTCGCTATGATGAGTACGTCAGTGTGAAAGACCTTAGTGATAAGATCAGCCGCGCTCTGACCGCAGCTAAGAAGGACAACGACTTCATCTACCACGACCGCGTCCCTGAGGTCAAAGACCTGGAACACATCGGCAAGGCAGCGCTGGTCAAGGCTACCACCATCACACCTCCGCTCAGCGCCAAGTTCACTGaCTTGTTTGAGAAGATGGTGCCCATGGCTGTGCAGCAGAGTATGAGTGTGTACAGCCAGAGGAAGGCTGAGACCGTCAACAGACTGGTAGGAACCATGAGGGAAGCTACTAACCTCTGCAACGGTGTCCTGGCATCTCTGAACCTGCCTGCGGCTCTGGAGGACCTGTCTGGAGATTCTATCCCACAATCCATTATTGAAAAGGCCCATGCCATCGTCCAGCAGGGGGGGCTGCAGAGCATAGAGCAGCTGATCAGAGACCTGCCGGAACTACTGACACGCAACAGAGAGATCCTGGatgagTCTCTGAAGATGCTGGATGATGAGGAGTCGACAGACAGCGAGCTGAGATCCAAGTTCAGCCAACGCTGGAACAGAACTCCCTCTGGAGACCTCTACAAACCACTCAGAGCggAGGGGGGTAACTTCCGTAGCGTGTTGGACAAGGCAGTGCAGGCTGACCAGGTGGTCAGGGAGCGTTATAATGCACACTGTGAGATGATCGCTCTCCTCTGTAAACCTGAGGCTGAACTCACCGCTGCCATACCTTCAGCCAACCCTGCTAAGACATTGCAGGGCAGCGAGgttGTGAGTGTGTTGCGTTCCCAGCTGTCCCAGCTagaggtggtgaagagagagagggaggtgctgGAGACGGAGATTAAGGGCGTGACCTTTGACATGTCCTCCAGCTTCCTGACGGCTCTGGCTCAGGACGGGGCCATCAATGAGGAGGCACTGTCAATGAGCCAGCTGGACCAATCATACGGCAGCTACAGCCAGAGGGTTCAAGCCAGCCTCCGCTCTCAGGAAGAGCTGTTGGGCAACGTGCAGGCATCTCACCAGGAGTTCTCCAGTCTGAAGCAGTCCAACTCTGAGGCTAATGATCGTGAGGAGGTGTTGAAGAAGCTGGCCTCGGCCCACGACAGCTACGTTGAGATCACCAGCAACCTCAGAGAGGGCACCAAGTTCTACAATGACCTCACCGAGATCCTGCTGAAGTTCCAGAACAAGTGCAGTGACATCGTCTTCGCCCGCAAGACAGAACGGGATGAACTGCTGAAGGATTTGCAGCAGAGCATCGCCAGGGAGCCCAGTGCCCCATCCTTCTCTGTCCCCGCCTACCAGACTAACCCCACCCCCACCGCCACTGGACCAACCCCCGCACCAAGGACTGTCTTCCCTCAGCAGCCCCAGGCGAAGGCCCAGCCTCCCGAGCGGCCCCCTCCCCCTGCCTTCACCCCCCAGGCCGCCTCCGCACCAGGCAACCCTCCCAGTAACCAGCCTCAACCAGTAAACCCCCCACCTATGGCCCCTCCCTCACAGGCCCAGGGACCGCCTTACCCCACATACCAGGGATACCCCGGGTATGCCTACCAGATGCCTATGGGTTATAACCCGTATGCAGCGTACGGCCAGTACAACATGCCCCCAACTATGCAGCCTAACATGCAGCCCTACATCCCCTATCAGCAGGCCCCAGCACCCGGACAGGGGGGCTACCCTGGGGTCCCCCCCACACAGCAGCACCCCTACACCTACCAACAGCAGCCCCAGCAACCACCACCACAGCCATACTACCCACAACAATAActactctctcactcctctcctccatccctctcctctgctATCGCTACTCCGACCGACAGCAGAAACCATGCTACTACGCCCAGCAATAactcctcaatctctctctctctctctcccttcttcctctgctcttccttcttctcttccctccctcctctaccttccctccctcctctaccttccctccctcctctaccttccctccctcctctacctt
>XM_021572439.2
AACGTCTTCTGACGTTTGCAGCAGAATCCAGGAAGTGAGGAGTCGCTTGTTGTTTTTGCCGATTGATAGTCctttcacattttatttgttaCTTTTCGCGGGCCAAAAATGGCGACTTTTATTTCTGTCCCGTTAAAGAAGTCGTCTGAAGTCGAACTAGTTAAACCGCTCTCGAAATTCGTTACGGCGACATACCCAACGGGCGAGGATCAAGCTGAGTATATCCGATCCGTGGAGGAGTTGAACAAGCTGCGCAAGAGTGCTCTGGGGAGGCCGCTCGACAAACACGAAAGCTCGCTGGAAATCCTCCTGAGGTATTATGATCAGCTGTGTGCCGTGGAGCCAAAGTTTCCCTTCTCTGAAAACCAGCTGTGTCTAACCTTCACATGGAAAGATGCCTTTGATAAGGGCTCACTGTTCGGGGGCTCAGTCAAACTAGccCTGGCCAGTCTGGGCTATGAGAAGACATGTGTGTTGTTCAATGGAGCAGCGTTGGCAAGTCAGATCGCTTCAGAACAAAACCTGGACAGCGATGAAGGACTGAAGGCCGCAGCCAAATACTACCAGttGGCAAGTGGAGCATTTGGTCACATTAAGGACACAGTGCTGTCGGCTCTGAACAGAGAGCCTACAATGGACATTTCTCCTGAGACCGTAGGAACCCTCAGTCTCATCATGCTGGCTCAGGCACAGGAAGTCTTCTTTCTCAAGGCTACTTCAGATAAGATGAAGGACGCCATCATCGCTAAACTGGCCAATCAGGCGGCAGATTTCTACAGCGATGCCTTCAAGCAGTGTCAGTACAAAGAGAACCTgcccaagGAGGTGTTGCCGGTGCTGGCAGCTAAACACTGCATCATGCAGGCCAACGCTGAGCTACACCAGTCTATCCTCGCCAAGCAGAAGAAACACTTTGGGGAGGAGATCGCTCGCCTGcagCATGCTTCAGAGCTGGTGAAGACGGTAGCGTCTCGCTATGATGAGTACGTCAGTGTGAAAGACCTTAGTGATAAGATCAGCCGCGCTCTGACCGCAGCTAAGAAGGACAACGACTTCATCTACCACGACCGCGTCCCTGAGGTCAAAGACCTGGAACACATCGGCAAGGCAGCGCTGGTCAAGGCTACCACCATCACACCTCCGCTCAGCGCCAAGTTCACTGaCTTGTTTGAGAAGATGGTGCCCATGGCTGTGCAGCAGAGTATGAGTGTGTACAGCCAGAGGAAGGCTGAGACCGTCAACAGACTGGTAGGAACCATGAGGGAAGCTACTAACCTCTGCAACGGTGTCCTGGCATCTCTGAACCTGCCTGCGGCTCTGGAGGACCTGTCTGGAGATTCTATCCCACAATCCATTATTGAAAAGGCCCATGCCATCGTCCAGCAGGGGGGGCTGCAGAGCATAGAGCAGCTGATCAGAGACCTGCCGGAACTACTGACACGCAACAGAGAGATCCTGGatgagTCTCTGAAGATGCTGGATGATGAGGAGTCGACAGACAGCGAGCTGAGATCCAAGTTCAGCCAACGCTGGAACAGAACTCCCTCTGGAGACCTCTACAAACCACTCAGAGCggAGGGGGGTAACTTCCGTAGCGTGTTGGACAAGGCAGTGCAGGCTGACCAGGTGGTCAGGGAGCGTTATAATGCACACTGTGAGATGATCGCTCTCCTCTGTAAACCTGAGGCTGAACTCACCGCTGCCATACCTTCAGCCAACCCTGCTAAGACATTGCAGGGCAGCGAGgttGTGAGTGTGTTGCGTTCCCAGCTGTCCCAGCTagaggtggtgaagagagagagggaggtgctgGAGACGGAGATTAAGGGCGTGACCTTTGACATGTCCTCCAGCTTCCTGACGGCTCTGGCTCAGGACGGGGCCATCAATGAGGAGGCACTGTCAATGAGCCAGCTGGACCAATCATACGGCAGCTACAGCCAGAGGGTTCAAGCCAGCCTCCGCTCTCAGGAAGAGCTGTTGGGCAACGTGCAGGCATCTCACCAGGAGTTCTCCAGTCTGAAGCAGTCCAACTCTGAGGCTAATGATCGTGAGGAGGTGTTGAAGAAGCTGGCCTCGGCCCACGACAGCTACGTTGAGATCACCAGCAACCTCAGAGAGGGCACCAAGTTCTACAATGACCTCACCGAGATCCTGCTGAAGTTCCAGAACAAGTGCAGTGACATCGTCTTCGCCCGCAAGACAGAACGGGATGAACTGCTGAAGGATTTGCAGCAGAGCATCGCCAGGGAGCCCAGTGCCCCATCCTTCTCTGTCCCCGCCTACCAGACTAACCCCACCCCCACCGCCACTGGACCAACCCCCGCACCAAGGACTGTCTTCCAGCCTCAGCAGCCCCAGGCGAAGGCCCAGCCTCCCGAGCGGCCCCCTCCCCCTGCCTTCACCCCCCAGGCCGCCTCCGCACCAGGCAACCCTCCCAGTAACCAGCCTCAACCAGTAAACCCCCCACCTATGGCCCCTCCCTCACAGGCCCAGGGACCGCCTTACCCCACATACCAGGGATACCCCGGGTATGCCTACCAGATGCCTATGGGTTATAACCCGTATGCAGCGTACGGCCAGTACAACATGCCCCCAACTATGCAGCCTAACATGCAGCCCTACATCCCCTATCAGCAGGCCCCAGCACCCGGACAGGGGGGCTACCCTGGGGTCCCCCCCACACAGCAGCACCCCTACACCTACCAACAGCAGCCCCAGCAACCACCACCACAGCCATACTACCCACAACAATAActactctctcactcctctcctccatccctctcctctgctATCGCTACTCCGACCGACAGCAGAAACCATGCTACTACGCCCAGCAATAactcctcaatctctctctctctctctcccttcttcctctgctcttccttcttctcttccctccctcctctaccttccctccctcctctaccttccctccctcctctaccttccctccctcctctacctt

Function

symbol description
pdcd6ip Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

NR:

description
programmed cell death 6-interacting protein isoform X3

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572437.2 False 2989 mRNA 0.55 18 52677421 52704871
XM_021572438.2 False 2986 mRNA 0.55 18 52677421 52704871
XM_021572439.2 True 2974 mRNA 0.55 18 52677421 52704871

Neighbor

gene id symbol gene type direction distance location
arpp21 LOC106588747 coding downstream 4700 52649871 ~ 52672721 (-)
arhgap4b LOC100380863 coding downstream 39686 52606702 ~ 52637735 (-)
fabp3 LOC100136763 coding downstream 102220 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 113682 52558640 ~ 52563739 (-)
nkain1 nkain1 coding downstream 119768 52552468 ~ 52557653 (-)
ubp1 LOC106588748 coding upstream 7682 52712553 ~ 52728916 (-)
clasp2 clasp2 coding upstream 26638 52731509 ~ 52824972 (-)
fbxl2 LOC106588753 coding upstream 133393 52838264 ~ 52858741 (-)
LOC110496507 LOC106588754 coding upstream 195800 52900671 ~ 52905814 (-)
LOC110496850 LOC106588723 coding upstream 213813 52918684 ~ 53015298 (-)
G1561378 NA non-coding downstream 2251 52674950 ~ 52675170 (-)
G1561375 NA non-coding downstream 5340 52671757 ~ 52672081 (-)
G1561369 NA non-coding downstream 21279 52654774 ~ 52656142 (-)
G1561368 NA non-coding downstream 28422 52648741 ~ 52648999 (-)
G1561285 NA non-coding downstream 36351 52640317 ~ 52641070 (-)
G1561396 NA non-coding upstream 74511 52779382 ~ 52779744 (-)
G1562427 NA non-coding upstream 122179 52827050 ~ 52831250 (-)
G1562451 NA non-coding upstream 201821 52906692 ~ 52918374 (-)
G1562450 LOC106588746 non-coding upstream 291785 52996656 ~ 53084936 (-)
G1562458 NA non-coding upstream 331517 53036388 ~ 53039622 (-)
G1561279 NA other downstream 29644 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 320111 52352725 ~ 52396978 (-)
G1561167 NA other downstream 426932 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 494214 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1222136 51381731 ~ 51455285 (-)
G1562762 NA other upstream 893779 53598650 ~ 53602694 (-)
tomm7 NA other upstream 917029 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1047535 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1169539 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 1184838 53887137 ~ 53895002 (-)

Expression


Co-expression Network