ubp1 (LOC106588748)


Basic Information

Item Value
gene id ubp1
gene name LOC106588748
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52712553 ~ 52728916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953164.1
GCCTGTTAATGCTAGCTAGTTAATTCAGACGGACATTGCGTGGGAATGCGGTGTGTGGACTGTCAACAACATCCCCCTGCAATTACGtaatgttgctagctagctaggtggctagctTTGGCTGGGTTTGGGATATTACGGTGTGCCATATCGCCGGCGAAATTGACTTTCGAGGACCGCAATTGCGCTAACTAGCGCTAGCTGGGTAGCTAGCGTTAGTGGTGCAGGGTTTCGCTAGCAAACGGTTATTTAGCATGCTGCTGTCCACCAGCAGCGGTTTATTCTCCCGCTAGCTGCGGTCCCTTCCCCGGAGGCAATCTGGCGGCCCTTCGGCTAGAGGCGGAGGAGAAGGAACTGGGGGCCATGGCCTGGGTGCTGAAGATGGACGATGCCACCATCGAGTCAGGACTGGTACACGACTTCGATGCCAGTCTTTCGGGCATCGGGCAGGAGCTGGGGGCTGGCGCATACAGTATGAGtGATGTGCTGGCCCTGCCAATCTTTAAACAGGAGGACTCCAGTCTTCCTTCAGACTGTGAGAGCAGCAGTCTCAACCCTCCCTTCCAGTACGTTCTCTGTGCTGCCACCTCCCCTGCTGTCAAACTACACGATGAGACACTCACCTACCTGAACCAAGgcCAGTCTTATGAGATCCGTATGCTGGACAACCGAAAGCTGGCCGAGTTACCAGAGATTAACAACAAGAGTGTCAAGagcatcgttagggtggtgtttcaTGACAGAAGACTCCAGTACACAGAGCACCAGCAACTGGAGGGGTGGAAATGGAATCGCCCTGGAGACCGTCTCCTAGATATCGacatcCCCCTGTCAGTGGGTATTGTGGAGGCGAAGGCCAACCCCGCTCAGCTCAACGCTGCCGAATTCCTCTGGGACCTCAACAAGAGAGCCTCCGTGTTTGTGCAGGTTCACTGCATCAGTACAGAGTTCACCCCTAGAAAGcatggaggagagaagggagttCCCTTCAGGATCCAGATCGACACTTTCAGACAGGGAGACAACGGAGAGTACACTGAACACCTCCACTCTGCCTCCTGCCAAATCAAAGTCTTCaagccAAAGGGGGCAGACAGGAAACAGAAGACTgacagagagaagatggagaaacGAACGTCTCAGGAAAAGGAGAAGTACCAGCCCTCCTACGACACAACCATACTATCAGAGatgaggctggagCCCATCATAGAGGAGGCAGGAGACTATGAGCTGAAGAAGTCCAGCAAGCGGACGCTGCCGGCTGACTGTGGGGACTCGCTGGCCAAGAGAGGCACTTGTTCTCCGTGGCCTGATGCCTACATCAGCTCTCCCCAGACAGCtggcccctctttctcctctacacCGCTCTCCACATACACTgcctcctctgtacctgacagTGGCCCCTCGTCGCCCAATCACCAGACAGACCCTGTCAGCCAAGTCGTCACAGAGcAGCTCAGTCCTACGGCTACCATCAAGGAGGCTCAGAAGTGGCTTGTCAAGAACCGCTTCAACACATATGCACGACTCTTCTCCCACttctcagGTTGTGACTTAATGAAGTTGACCCGGGATGACCTGGTTCAGATCTGTGGAGCTGCTGATGGAATCAGACTCTTCTACACACTCAGAtccagGTCGGTGCGTCCCAGGTTGACCATCTATGTGTGTCAGGAGGGTGATGTGGAGAGCCCCCTGCTGGAGAGACGCTGCGACAGCGAGAACGGAGAGCACAGTGACTCACCTAACTTATATGTGTACCATGCTCTATACCTGGAGGAGCTGACGGCTGCTGAGTTGATCAGGAAGatggcgtgtgtgtgtagtgttccaCTGGGACAGATCAACCAGGTCTACCGACAAGGACCCACAGGAATACACATACTGCTGAGTGACCAGGTGGTTTATAACTTACCTGATGAGAGCTGCTTTCTCATTGGCACACTCAAAGatgAAACGGGGGAGGGGCTCCACCTGGTTTTGAAGTAGCGATGGAGGACGAGAGCGTGATGACATCACTGAAAACTCCTCCCTCTGTGAATAGCAGagcagtctccctccctccctctctctcccctatcatTCAGATTGCTATGTGTAAGACAGAGGGACTGAACTGAAGCCATGTTAACGTTAGAATCTGACGCGGGTGTGACCACTGTTTCATATTGAAAACACTATTActgaggggcagagagggggaggcttGTGGCGTGTTTTATTCTCTCCATTTCTTTATAGTTTTATAAGTGGGGAGGGGTAGGCTGCCCCCCACAGAGAGGCTCATAGAGGCAGTGCTTAAGGCTTCAGCCAGGGCTAGGCCAGTAGTCAGTGCTGTAATGCCATGTGACTTGAACATACAGAttgatggacagacagacggacccCAGACGTTTGATCTCATTTGCTTTGACTGAGACTCGACCACTTCCACGGAAGCAGAGCTGGCAACTAATAAACTCAAACAGAACAAACTGTCTAGAACATGTCAGTCATTCCTCTGAGGGCCAAATGTCTGCAGATTTTTGCTCCACCCTTGTACTTTATTGGTGAATTAAGGTCAGTAATTAGTAAGTAActtccctcacctggttgtctaggtcttaattgaaaggaaaaacctgcagacactcggccctcccaGGAATGAGTTTGACGCTGATCTTGAACAACAGTCTCTGTGTGGTTGTGTATATTGTGTAGAacacagtagtctagatatgaacGTTCTAGATCTGTTCCCAGACATTCTAGAACTAGTGAGGATGGGGGTCCTCTTAGCCAATCAAGTCAAGATTTGACTGTTAGGGGTGTTAGCATTCTGTTAGCCAGTGTCTAACAGGGCCTGTTCTGGTTCATGTATCATATGAACCAAGTCTGATACCATAATATACAGCCTGCTTTCATAGACTAGAcacagtaaatgtaaatctgggacactcaaattagtatgatacacgacatgaccaaaagtatgtggacacctgctcgtcaaacatctcattccaaaatcatgggcatttaaTATAGAGTTGTCCCCACCCCCCTTGCTGCAATAACAGTCTCAactcttatgggaaggctttctcctagatgttggaatatttctgcagggacttgcttccactcAGCCACGAGCATTCGTGAGGACAGGCACTGATATTGGgctattaggcctggctctcagtctgcctttcaattcatcccaaaggtgttcgatgtggttgaggtcagggctctgtgcagaccagtgaagttcttccacaccgatctcgataaaccatttctttatggat
>XM_036953163.1
ttgtgagGGCATAGTCTGTTGAGAAGCCATGTTTATGCTGGCTGCTTTTGTGACAACTGCCACTCTTCTGATGTTTAAAGACTCTTATTTAACCGGCCGGGAACTGTAGCCCTGGTCACAAGTCCGCGATGAAAAAAGGAGAGAGGTTTCGGAGGGCACAGGAAGCGCTGGCTGCGACCTTCGCATAGGAGGATTCCAAACATCCGTGAATCAAAATCCACCAGCAGCGGTTTATTCTCCCGCTAGCTGCGGTCCCTTCCCCGGAGGCAATCTGGCGGCCCTTCGGCTAGAGGCGGAGGAGAAGGAACTGGGGGCCATGGCCTGGGTGCTGAAGATGGACGATGCCACCATCGAGTCAGGACTGGTACACGACTTCGATGCCAGTCTTTCGGGCATCGGGCAGGAGCTGGGGGCTGGCGCATACAGTATGAGtGATGTGCTGGCCCTGCCAATCTTTAAACAGGAGGACTCCAGTCTTCCTTCAGACTGTGAGAGCAGCAGTCTCAACCCTCCCTTCCAGTACGTTCTCTGTGCTGCCACCTCCCCTGCTGTCAAACTACACGATGAGACACTCACCTACCTGAACCAAGgcCAGTCTTATGAGATCCGTATGCTGGACAACCGAAAGCTGGCCGAGTTACCAGAGATTAACAACAAGAGTGTCAAGagcatcgttagggtggtgtttcaTGACAGAAGACTCCAGTACACAGAGCACCAGCAACTGGAGGGGTGGAAATGGAATCGCCCTGGAGACCGTCTCCTAGATATCGacatcCCCCTGTCAGTGGGTATTGTGGAGGCGAAGGCCAACCCCGCTCAGCTCAACGCTGCCGAATTCCTCTGGGACCTCAACAAGAGAGCCTCCGTGTTTGTGCAGGTTCACTGCATCAGTACAGAGTTCACCCCTAGAAAGcatggaggagagaagggagttCCCTTCAGGATCCAGATCGACACTTTCAGACAGGGAGACAACGGAGAGTACACTGAACACCTCCACTCTGCCTCCTGCCAAATCAAAGTCTTCaagccAAAGGGGGCAGACAGGAAACAGAAGACTgacagagagaagatggagaaacGAACGTCTCAGGAAAAGGAGAAGTACCAGCCCTCCTACGACACAACCATACTATCAGAGatgaggctggagCCCATCATAGAGGAGGCAGGAGACTATGAGCTGAAGAAGTCCAGCAAGCGGACGCTGCCGGCTGACTGTGGGGACTCGCTGGCCAAGAGAGGCACTTGTTCTCCGTGGCCTGATGCCTACATCAGCTCTCCCCAGACAGCtggcccctctttctcctctacacCGCTCTCCACATACACTgcctcctctgtacctgacagTGGCCCCTCGTCGCCCAATCACCAGACAGACCCTGTCAGCCAAGTCGTCACAGAGcAGCTCAGTCCTACGGCTACCATCAAGGAGGCTCAGAAGTGGCTTGTCAAGAACCGCTTCAACACATATGCACGACTCTTCTCCCACttctcagGTTGTGACTTAATGAAGTTGACCCGGGATGACCTGGTTCAGATCTGTGGAGCTGCTGATGGAATCAGACTCTTCTACACACTCAGAtccagGTCGGTGCGTCCCAGGTTGACCATCTATGTGTGTCAGGAGGGTGATGTGGAGAGCCCCCTGCTGGAGAGACGCTGCGACAGCGAGAACGGAGAGCACAGTGACTCACCTAACTTATATGTGTACCATGCTCTATACCTGGAGGAGCTGACGGCTGCTGAGTTGATCAGGAAGatggcgtgtgtgtgtagtgttccaCTGGGACAGATCAACCAGGTCTACCGACAAGGACCCACAGGAATACACATACTGCTGAGTGACCAGGTGGTTTATAACTTACCTGATGAGAGCTGCTTTCTCATTGGCACACTCAAAGatgAAACGGGGGAGGGGCTCCACCTGGTTTTGAAGTAGCGATGGAGGACGAGAGCGTGATGACATCACTGAAAACTCCTCCCTCTGTGAATAGCAGagcagtctccctccctccctctctctcccctatcatTCAGATTGCTATGTGTAAGACAGAGGGACTGAACTGAAGCCATGTTAACGTTAGAATCTGACGCGGGTGTGACCACTGTTTCATATTGAAAACACTATTActgaggggcagagagggggaggcttGTGGCGTGTTTTATTCTCTCCATTTCTTTATAGTTTTATAAGTGGGGAGGGGTAGGCTGCCCCCCACAGAGAGGCTCATAGAGGCAGTGCTTAAGGCTTCAGCCAGGGCTAGGCCAGTAGTCAGTGCTGTAATGCCATGTGACTTGAACATACAGAttgatggacagacagacggacccCAGACGTTTGATCTCATTTGCTTTGACTGAGACTCGACCACTTCCACGGAAGCAGAGCTGGCAACTAATAAACTCAAACAGAACAAACTGTCTAGAACATGTCAGTCATTCCTCTGAGGGCCAAATGTCTGCAGATTTTTGCTCCACCCTTGTACTTTATTGGTGAATTAAGGTCAGTAATTAGTAAGTAActtccctcacctggttgtctaggtcttaattgaaaggaaaaacctgcagacactcggccctcccaGGAATGAGTTTGACGCTGATCTTGAACAACAGTCTCTGTGTGGTTGTGTATATTGTGTAGAacacagtagtctagatatgaacGTTCTAGATCTGTTCCCAGACATTCTAGAACTAGTGAGGATGGGGGTCCTCTTAGCCAATCAAGTCAAGATTTGACTGTTAGGGGTGTTAGCATTCTGTTAGCCAGTGTCTAACAGGGCCTGTTCTGGTTCATGTATCATATGAACCAAGTCTGATACCATAATATACAGCCTGCTTTCATAGACTAGAcacagtaaatgtaaatctgggacactcaaattagtatgatacacgacatgaccaaaagtatgtggacacctgctcgtcaaacatctcattccaaaatcatgggcatttaaTATAGAGTTGTCCCCACCCCCCTTGCTGCAATAACAGTCTCAactcttatgggaaggctttctcctagatgttggaatatttctgcagggacttgcttccactcAGCCACGAGCATTCGTGAGGACAGGCACTGATATTGGgctattaggcctggctctcagtctgcctttcaattcatcccaaaggtgttcgatgtggttgaggtcagggctctgtgcagaccagtgaagttcttccacaccgatctcgataaaccatttctttatggat
>XM_036953165.1
ttgtgagGGCATAGTCTGTTGAGAAGCCATGTTTATGCTGGCTGCTTTTGTGACAACTGCCACTCTTCTGATGTTTAAAGACTCTTATTTAACCGGCCGGGAACTGTAGCCCTGGTCACAAGTCCGCGATGAAAAAAGGAGAGAGGTTTCGGAGGGCACAGGAAGCGCTGGCTGCGACCTTCGCATAGGAGGATTCCAAACATCCGTGAATCAAAATCCACCAGCAGCGGTTTATTCTCCCGCTAGCTGCGGTCCCTTCCCCGGAGGCAATCTGGCGGCCCTTCGGCTAGAGGCGGAGGAGAAGGAACTGGGGGCCATGGCCTGGGTGCTGAAGATGGACGATGCCACCATCGAGTCAGGACTGGTACACGACTTCGATGCCAGTCTTTCGGGCATCGGGCAGGAGCTGGGGGCTGGCGCATACAGTATGAGtGATGTGCTGGCCCTGCCAATCTTTAAACAGGAGGACTCCAGTCTTCCTTCAGACTGTGAGAGCAGCAGTCTCAACCCTCCCTTCCAGTACGTTCTCTGTGCTGCCACCTCCCCTGCTGTCAAACTACACGATGAGACACTCACCTACCTGAACCAAGgcCAGTCTTATGAGATCCGTATGCTGGACAACCGAAAGCTGGCCGAGTTACCAGAGATTAACAACAAGAGTGTCAAGagcatcgttagggtggtgtttcaTGACAGAAGACTCCAGTACACAGAGCACCAGCAACTGGAGGGGTGGAAATGGAATCGCCCTGGAGACCGTCTCCTAGATATCGacatcCCCCTGTCAGTGGGTATTGTGGAGGCGAAGGCCAACCCCGCTCAGCTCAACGCTGCCGAATTCCTCTGGGACCTCAACAAGAGAGCCTCCGTGTTTGTGCAGGTTCACTGCATCAGTACAGAGTTCACCCCTAGAAAGcatggaggagagaagggagttCCCTTCAGGATCCAGATCGACACTTTCAGACAGGGAGACAACGGAGAGTACACTGAACACCTCCACTCTGCCTCCTGCCAAATCAAAGTCTTCaagccAAAGGGGGCAGACAGGAAACAGAAGACTgacagagagaagatggagaaacGAACGTCTCAGGAAAAGGAGAAGTACCAGCCCTCCTACGACACAACCATACTATCAGAGatgaggctggagCCCATCATAGAGGAGGCAGGAGACTATGAGCTGAAGAAGTCCAGCAAGCGGACGCTGCCGGCTGACTGTGGGGACTCGCTGGCCAAGAGAGGCACTTGTTCTCCGTGGCCTGATGCCTACATCAGCTCTCCCCAGACAGCtggcccctctttctcctctacacCGCTCTCCACATACACTgcctcctctgtacctgacagTGGCCCCTCGTCGCCCAATCACCAGACAGACCCTGTCAGCCAAGTCGTCACAGAGCTCAGTCCTACGGCTACCATCAAGGAGGCTCAGAAGTGGCTTGTCAAGAACCGCTTCAACACATATGCACGACTCTTCTCCCACttctcagGTTGTGACTTAATGAAGTTGACCCGGGATGACCTGGTTCAGATCTGTGGAGCTGCTGATGGAATCAGACTCTTCTACACACTCAGAtccagGTCGGTGCGTCCCAGGTTGACCATCTATGTGTGTCAGGAGGGTGATGTGGAGAGCCCCCTGCTGGAGAGACGCTGCGACAGCGAGAACGGAGAGCACAGTGACTCACCTAACTTATATGTGTACCATGCTCTATACCTGGAGGAGCTGACGGCTGCTGAGTTGATCAGGAAGatggcgtgtgtgtgtagtgttccaCTGGGACAGATCAACCAGGTCTACCGACAAGGACCCACAGGAATACACATACTGCTGAGTGACCAGGTGGTTTATAACTTACCTGATGAGAGCTGCTTTCTCATTGGCACACTCAAAGatgAAACGGGGGAGGGGCTCCACCTGGTTTTGAAGTAGCGATGGAGGACGAGAGCGTGATGACATCACTGAAAACTCCTCCCTCTGTGAATAGCAGagcagtctccctccctccctctctctcccctatcatTCAGATTGCTATGTGTAAGACAGAGGGACTGAACTGAAGCCATGTTAACGTTAGAATCTGACGCGGGTGTGACCACTGTTTCATATTGAAAACACTATTActgaggggcagagagggggaggcttGTGGCGTGTTTTATTCTCTCCATTTCTTTATAGTTTTATAAGTGGGGAGGGGTAGGCTGCCCCCCACAGAGAGGCTCATAGAGGCAGTGCTTAAGGCTTCAGCCAGGGCTAGGCCAGTAGTCAGTGCTGTAATGCCATGTGACTTGAACATACAGAttgatggacagacagacggacccCAGACGTTTGATCTCATTTGCTTTGACTGAGACTCGACCACTTCCACGGAAGCAGAGCTGGCAACTAATAAACTCAAACAGAACAAACTGTCTAGAACATGTCAGTCATTCCTCTGAGGGCCAAATGTCTGCAGATTTTTGCTCCACCCTTGTACTTTATTGGTGAATTAAGGTCAGTAATTAGTAAGTAActtccctcacctggttgtctaggtcttaattgaaaggaaaaacctgcagacactcggccctcccaGGAATGAGTTTGACGCTGATCTTGAACAACAGTCTCTGTGTGGTTGTGTATATTGTGTAGAacacagtagtctagatatgaacGTTCTAGATCTGTTCCCAGACATTCTAGAACTAGTGAGGATGGGGGTCCTCTTAGCCAATCAAGTCAAGATTTGACTGTTAGGGGTGTTAGCATTCTGTTAGCCAGTGTCTAACAGGGCCTGTTCTGGTTCATGTATCATATGAACCAAGTCTGATACCATAATATACAGCCTGCTTTCATAGACTAGAcacagtaaatgtaaatctgggacactcaaattagtatgatacacgacatgaccaaaagtatgtggacacctgctcgtcaaacatctcattccaaaatcatgggcatttaaTATAGAGTTGTCCCCACCCCCCTTGCTGCAATAACAGTCTCAactcttatgggaaggctttctcctagatgttggaatatttctgcagggacttgcttccactcAGCCACGAGCATTCGTGAGGACAGGCACTGATATTGGgctattaggcctggctctcagtctgcctttcaattcatcccaaaggtgttcgatgtggttgaggtcagggctctgtgcagaccagtgaagttcttccacaccgatctcgataaaccatttctttatggat

Function

NR:

description
PREDICTED: upstream-binding protein 1-like isoform X2

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953164.1 False 3302 mRNA 0.51 17 52712553 52728674
XM_036953163.1 False 3255 mRNA 0.51 17 52712553 52728916
XM_036953165.1 True 3252 mRNA 0.51 17 52712553 52728916

Neighbor

gene id symbol gene type direction distance location
LOC110496501 pdcd6ip coding downstream 7682 52677421 ~ 52704871 (-)
arpp21 LOC106588747 coding downstream 39832 52649871 ~ 52672721 (-)
arhgap4b LOC100380863 coding downstream 74818 52606702 ~ 52637735 (-)
fabp3 LOC100136763 coding downstream 137352 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 148814 52558640 ~ 52563739 (-)
clasp2 clasp2 coding upstream 2593 52731509 ~ 52824972 (-)
fbxl2 LOC106588753 coding upstream 109348 52838264 ~ 52858741 (-)
LOC110496507 LOC106588754 coding upstream 171755 52900671 ~ 52905814 (-)
LOC110496850 LOC106588723 coding upstream 189768 52918684 ~ 53015298 (-)
LOC110496514 LOC106588757 coding upstream 454427 53183343 ~ 53187737 (-)
G1561378 NA non-coding downstream 37383 52674950 ~ 52675170 (-)
G1561375 NA non-coding downstream 40472 52671757 ~ 52672081 (-)
G1561369 NA non-coding downstream 56411 52654774 ~ 52656142 (-)
G1561368 NA non-coding downstream 63554 52648741 ~ 52648999 (-)
G1561285 NA non-coding downstream 71483 52640317 ~ 52641070 (-)
G1561396 NA non-coding upstream 50466 52779382 ~ 52779744 (-)
G1562427 NA non-coding upstream 98134 52827050 ~ 52831250 (-)
G1562451 NA non-coding upstream 177776 52906692 ~ 52918374 (-)
G1562450 LOC106588746 non-coding upstream 267740 52996656 ~ 53084936 (-)
G1562458 NA non-coding upstream 307472 53036388 ~ 53039622 (-)
G1561279 NA other downstream 64776 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 355243 52352725 ~ 52396978 (-)
G1561167 NA other downstream 462064 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 529346 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1257268 51381731 ~ 51455285 (-)
G1562762 NA other upstream 869734 53598650 ~ 53602694 (-)
tomm7 NA other upstream 892984 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1023490 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1145494 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 1160793 53887137 ~ 53895002 (-)

Expression


Co-expression Network