susd5 (LOC106588743)


Basic Information

Item Value
gene id susd5
gene name LOC106588743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52862680 ~ 52892459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572444.2
TTGACCGTTGCTGTTGCTCAGTTCGCGCCACTGCCCATCCTTCAGGTTGGGAGCCGTGACGTATTTACTGACAGGGACACGCGAGTTTTCGCGCCGGTGCTCTATTTGCTCGCGAAGGCACTATTTGGGGAGATAAACCGAACCAACCGTCCCGTTCCTTTCCGTTTTACCGTTTTGCGTCAACAAGTTCACCTCCAGACTCAGTCTGTGTCTGTCACCGGGAGGGAAATAACGGGACCGCTGCTCTCTCCTGCTTCACAAACTCAACAAAGGAGATTTATTTCCATGAAActcttgattttttttaaacaccggTGAAAACCCGAATCGGAGCGCGCAGAGAATGATGGCACGCCGCATTGACCGAAATCTGGTTTCTTTGTCCATGTTTGGATACTTGGTTTGGCTAACGGTGGTTTCTGTCGTTCACGCTGACGGTCGTGTGTTCTTATTGGACCAGAGAAACACGTCTGACTCCGGGGGATTGGCTGAGGCGGAACATGCGTGTGCTTCCCATGATGCCCGGCTGGCGTCAGCCGAGGAGCTGCGTCATGCCGTGGTGGAGTGTTCCTTCTCTCCCTGCACACGAGGATGGCTGGACGGGGGCAGCGtgggGACTACAGTGTGTAGTAACTTGGGCAGTGCTCTGAAGGCAGTGGATGTGAAGATAGAGAACACTACAGAGGACAACACACACCTGGATGTCTTCTGTGTCAAAGACAAGGGTGTTCCATGTGGAGACCCCCCTGCGTTCCCCAACACGCATCTCCAGGGCCACACCGGGTTTGAGATGGGGGACGAGCTGCTGTACTCCTGTCTACCTGGTCATGTGTTGCCCAGCGGCCACTCAGCCTTCAGCCTGCTGTGTGACAGCTGTGGAGAGTGGTACGGACTGGTACAGCTTTGTGTAAaagACAAGACAGAGGCCCACATTGACTATGAAGATAAGTTCACTGATGACGATCACCACCTCTCCTACGACACCCCTACTGAGGAGGAGGACACACAGGAGGAACCGGTAGAAGAGGAGGTGCAAGAGGAGACAGCATATGTCAATGTGGAGGAGGACACAGGAGAAGAGGGGCGCAGGGATCAGGAGCAGCAGGAGGCCAGCTTCAGCATGACGGAAGTAGAGGAGCAGGATgtggagacgggaggagaggaggaagtgcagggaggagaggagctgtctgtgggagaggaggagcagcaggaggagaacGTGGGGGAAGGACTGGTGACtggaagaaaggaggaggagcTGGAAGACTCGACAGACCATCCCGTCGATgaggagaagcaggaggaggagcaggaggaggggatgggcaTGTCGGAGGCGACTGAGGCGCCCGTCTCCCTGCTTTCCCAGAAGCACCTGTTCTGGTTCCCCTCAGAGGCCTTCCAGGAGGCGGGACATGTGGAACCCACCCACCCGCCAGTCACACAGGACACACCCCCTGAGGGAGACAACCGTGTCAGGGCCTCCGGCAGCGAATCAGAGGAGAGCAAGGAAGACAACAGCCAACCAGAGGAGACAAAGGATCATGACAGCCATGAGGGTCAATTCCAACAACCAATTGACCACAATGACCATGATGACCACGAAGATGATGTTGACCATGAACATATTGACCGTGAATATGATCACGACGATCGAACAGATCCTGACCACGATGAAAGTTCTGAACAAGACCATGTTGTTGAACACCTTGACCACGATGATCCTGACACCCATGATGGCCATGAACATGACAACCATGAAAGCTATGATAGTGAAGAGGCCCACCGTGAGGACCAAGGAGAACACAAGGAGGATGACCATGAGAAGGGGGGTGCGTATGATAACGGACACGACGAGCATTACAACATGGGTGAACACGAGGAGGATGACCGCATTCAATATCACAGCCACGGTGAACATGATGATCATGAAGACCATGACCACGATGATGTAACGGATCACCATGACGATGATGATCATGACCACTCAGATCCTAGCGATCACCACGATGACCATGAAGACCAAGACCATGTCCACGACCATGATCACCTTGATGACCATGAAGACCAAGACCATGACCATAACGATCAAGATGAtcatggccatgatgaccatgACCACGACGACCATGAAGATGGCCATGTAGTCCCTCCCATTGGAATGACAACAGGCGAGCCTCAGAATGTAACCCAGGAGGCGGCGGGAGGAGAACCCACAGCCAGCACAGATGAAACCTGGTTGGACGGCTACCCTGTCAGTCAGGAGGAGACTGACACTGATAAAGTGGGAGGCGGCTCCACAGAGGAAGAGGTGGAGCCTGAGGtgcgagaggaggaagaggagggtcttgTGGTTGTCGGGGTGACGGACCGGCCCAATGAGGTGGAGATGAGTCGTCCCGTCCCATTCACGGGCGTCCCTCAGGTCCCCCTGTCCCCCACGCAGGAGGCGGACCCTGTAGAGCAGGATCAGGACCAGGTGGGAGGACTAAGCCATAAAGCCTCACCCGACTCACCCCTCTCCCCTGAGGCCACATCCTCAGATTCCTATTCAGCCGACTACACCACGCCctctctgacatcatcactggaCGACGTCACCCCCAGAAACGCTGCCAGGCCTTCTCCCACAGACTCCTGGGAAACCACGGATCATGTGCACCCCTTTCTGGAGCACGGCCCCGCCCCCACGGCGTGGACTGATGATGTCATTGACGAGGAGGAACGTGGAGCCGAGCACAACCTGACTCGACACagcggggagagggagggggaggaaggggagagggaaggcAAGACAGGGGAGGCAGGGTGTACCGGAGGTGAGGAGGActgccctcctccccctcctcccccctccggCAGGGGGCCCACGGTGGCGGCCATTGTCATTGCTGTGTGCACGGTTGCCCTGGCAGCCGCCGTCGGTGCGTGGTGTTACCGACGGAAACAGCAGAAGAGCTCAATGTACGAGATGAACGGGAAGGGTCAGAGTCACAGCAGACATGGACAACAGATAGAGATGCAACAGaaggtctaagagagagagacagtgcggctgcagagagagtggagggaggcttgAGGAGGGTGAGGTGATGTGGGTTAGGGTATTTGGGGTGTGTGAGTTGAACAGCCACACACTACACCTGCAGACACAGAAGAATGAGTTGACGGGTGAGGAAGGGGTTGAGGGGTGAGGGTTGAGGGTATTTGAATGGTGAGGTTTCGGGCTGAGGAAGTGTTGAGGGTTGGTGGTTAGGGTCGGGTAGAGGGACGAGGGAATGAGATGAGTGGCTATGCTATGCTAATGCTAGCAGGAGTTTTCAACTCTGGTGACGAACGAGAAGGGACTCCTCCTCCAGAGCTCTGGGACATTGTGGTTCAGAATCATACCTGTTTATTAATTTGTAATTACCATGTTGTTACTGTGTTATTCCCATGTTATTACTGTCTTTGATGATATTTTGATTTCATTGTTCTTGTGTGAGACAATTGAACTTTGTTATGTTGTATTATTAGGGCTCTACCTTACTATGTAGTTGTGTAACATTGTGCATGATTGTAAGGATTCCTTGTTTCTCACCATGACATCAGCATTTGAAATTGCTGTCAGAGTTGGCACCCTGATTTGAGTGGATGCATTCAGGGTcctattcattaggcaccaaatggaagaaaaaaattgactgaaacagggaaggattACCTGAACTTGTCCCAAAAGAAACGCTAGTTTTCGTTTTCCATTACAAAACGTTCTTCCCACAGTGTGATCTATTGAATACAACCAATTAGGTGTTCTAACGTCCATACATACCTCTTCTGACACTACCTAAATACTTGGTTGAAGATAACCAAGGTTAAAACAAGAGGATTCTAATATCCCATAACTCTTTGCATAAACATGGAAGATTTTTCAACTAAGGGACCAGCAATGCTAGTTATTAACGGCTCTGGTCCAGTAATGCTGCGTTTAGACGAGGGACGCAAAAACCCGTTATACATATCGGCGTAGCCGgacaagaaagcaaaaaagatgGTCACGGCAAAAACAACAGTACGAGTTTCTATGGTGATTTCAGTAAACAAGCCGTGCAAATCAACACCCAGTAGAAAACAACGTTAC

Function

NR:

description
sushi domain-containing protein 5

GO: NA

KEGG:

id description
K23823 SUSD5; sushi domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572444.2 True 4132 mRNA 0.53 5 52862680 52892459

Neighbor

gene id symbol gene type direction distance location
cyhr1 LOC106588755 coding upstream 217861 52641237 ~ 52644819 (+)
dclk3 LOC106588742 coding upstream 256025 52600385 ~ 52606655 (+)
zcchc17 zcchc17 coding upstream 292400 52563530 ~ 52570280 (+)
LOC110496490 NA coding upstream 517012 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 565460 52294668 ~ 52297220 (+)
fkbp9 LOC106588749 coding downstream 13940 52906399 ~ 52918381 (+)
si:ch211-199g17.2 LOC106588746 coding downstream 132957 52996763 ~ 53051271 (+)
LOC110496510 LOC106588740 coding downstream 184570 53077029 ~ 53109904 (+)
LOC118941187 NA coding downstream 229653 53122112 ~ 53128537 (+)
LOC110496945 LOC106588722 coding downstream 246692 53139151 ~ 53141355 (+)
G1561422 NA non-coding upstream 20292 52827139 ~ 52842388 (+)
G1561421 NA non-coding upstream 36049 52826215 ~ 52826631 (+)
G1561420 NA non-coding upstream 36633 52825770 ~ 52826047 (+)
G1561125 NA non-coding upstream 42316 52819814 ~ 52820364 (+)
G1561068 NA non-coding upstream 102417 52759813 ~ 52760263 (+)
G1561478 LOC106588754 non-coding downstream 8227 52900686 ~ 52904060 (+)
G1561511 NA non-coding downstream 127283 53019742 ~ 53020529 (+)
G1561433 NA non-coding downstream 146492 53038951 ~ 53041839 (+)
G1561562 NA non-coding downstream 243284 53135743 ~ 53136526 (+)
G1560957 NA other upstream 420739 52441146 ~ 52441941 (+)
G1560911 NA other upstream 506845 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 605150 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 788651 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 2227114 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 283263 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 385331 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 825910 53713836 ~ 53730416 (+)
G1561845 NA other downstream 924705 53817164 ~ 53840871 (+)
G1561856 NA other downstream 979714 53872173 ~ 53876930 (+)

Expression


Co-expression Network