LOC110496511 (LOC106588739)


Basic Information

Item Value
gene id LOC110496511
gene name LOC106588739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53141523 ~ 53173990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953238.1
TGCTGCTCATGCGTATGATGCCTTTTCCTGCCAGCAACAACAGAAACAGCAGCATCTCGCATCATCACTGAGAAGAACTGAgattggagagagaaagaaagaaggagatgATGGTGGGGAGTcgagaaggaaaattatgaaataacGggtgaGGGTGTGGGCCATGTCTGAGCTgtgagtagtggaggagaggaagaggaggtgtaggagaggaagaggaggtgaggACTGAATAGCGGAGTGCGACGCCCCCTGTAGGGCAGTGATGGGGAACACAGCCACTAAGTTCCGGAAGGCTCTAGTCAGCGGGGACGAGGCGTTGGCATGGCAACTGTACGAGGGCAACAGCCAGTTCAGAGAGGGGCTGGACCCCAACGCGTCCTACGGAGAGACCTACCAACACAACACACCCCTCCACTACACCTGCAGGCACGCCATGACACGTCTGCTCAGGTCCTTCCTTTTCAGTAAAGAAGGGAACCCTAACAAGCGGAACGTGCAGAATGAGACATGTCTGCATGCGTTGTGTCAGGGAGCGCACATCCTGCTTCTGCCAGAGGGGGCACTGTCTCCCAGACTGGCCAGACCACAGAGAGACGAACAACGCAGGGCAGACTGCCTACAGatgaTCCTGAGCTGGACCGGGGCTAGGCTGGACAGAGGACAGTATGAAAGGGTTAACATTAATGCTACAGACAACAGGAACAGCACCTGTCTACActacgctgctgctgctggcaTGAAGAACTGTgtagagctccTGGTCCAGGCTGGGTCAGACCTGTTTGTGGAGGACGAGGAGAAGTTAACCCCGTGTGACCACGCAGAGAGACAGCAGCACACACACCTGGCCCTGCGCCTCGAAGCCATGATGGTGttctcacaacacacacacaccgagacacagACACCCAGCAGCACGCTGCGCCATAAAGAGCCCTATGAGGGTTTGAAGCTGCAGGACTTGAGGAGACTGAAGGACATGTTGATAGTGGAGACAGCTGACATGCTGCAGGCTCCTCTCTTCACCGCTGAGGCACTGCTCAGAgcacacgactgggacagagagaagCTTTTGGAAGCCTGGATGAGTGATTCTGAGGAGTGCTGCCAGCGGTCTGGGGTCTTGATGCCCACACCCCCGCCCAGCGGGTGCAATGCCTGGGACACCCTGCCTTCCCCGCGCACCCCTCGCTcccccctcaccctaaccctcacgTCCCTCACTGACAGCTGCCTCACcccaggggaggagggagggactaCGTGTGGGATCTGCCTGTGTTCCATCTCAGTGTTTGAAGACCCAATAGACATGTCCTGTGGTCATGAGTTCTGCCGAGCCTGCTGGGAAGGGTTTCTGAATGTGAAGATCCAGGAGGGTGAGGCTCATAACATCTTCTGTCCTGCCTGTGACTGTTACCAGCTGGTGCCTGTTCAGGTTATAGAGAGTGTTGTCTCCAGAGAGATGGACAAACGATACCTGCAGTTCGACATcaagGCGTTCGTGGAGAACAACCCATCTATTCGGTGGTGCCCAGCAGTGCGGTGTGAGAGAGCGGTCAGACTGACCAGGCCTGGTCCGGGGGTCAACCACCTGGGGTTCCCCCTGCTGCCCTCCCCTGCAGTCGACTGTGGCAAGGGTCACCTCTTCTGCTGggagtGTCTAGGTGAGGCCCATGAGCCATGTGACTGTCAGACATGGAGGATGTGGCTGCAGAAAGTCTCAGAGATGAAGCCAGAAGAGTTGGCAGGTGTATCGGAGTCGTATGAGGATGCAGCTAACTGTCTGTGGTTGTTAACCAACTCTAAACCCTGTGCCAACTGCAAGTCTCCCATACAGAAGAATGAGGGCTGCAACCACATGCAGTGTGCCaagtgTAAATATGATTTCTGCTGGATCTGTCTGGAAGAGTGGAAGAAACACAGCTCTTCAACTGGAGGATACTACCGCTGTACACGCTATGAGGTCATCACACAGCTAGAGGAGCAGTCCAAAGAGATGACTggagagGCGGAAAAGAAGCACAAGAGTTTTCAGGAGTTGGACCGCTTCATGCACTACTACAGCCGCTATAAGAACCATGAACACAGCTataagttaGAACAGAGACTATTGAAAACAGCCAAAGAGAAGATGGAACAGCTGAGTAGAGCCTTCATTGGATGTGAGGGCTCCCCCCCAGACACCAGATTTATAGAGGACGGTGTGTGTGAGTTGTTGAAGACACGTCGTGTGTTGAAGTGTTCCTACCCCTACGGATTCTTCCTCCAGCCTCACAGCACACAGAAGGAGATATTTGAActcatgcagACTGATCTGGAGATGGCGGTGGAGGACTTGGCTCAGAAGGTGAACCGTCCCTACCTGCGTACGCCGTGTCATAAGATAGTCAGCGCTGCCTGTCTGGTACAGCAGAAGAGAGAGGAGTTCCTGGCCTCGGTGGCTAGAGGGGTGGCCCCTAACGACTCACCTGAAGTACctaggaggagTTTCCCTGCTGGATCATGGGACTGGGAGTACCTGGGATTCACCTCTCCTGAGGAGTATGCTGATTTCCAGTACCGGCGGAGACACCGGCCGCGTCGTAGAGGAGACATGCCGAGTTTACACAGTCTGAGGAGCAACAGCAGTACTCCTGAGCCCAACCAGAACCCTGAgaatacagAGGTCCTCCAGGAGAGAGTTGAGGGGCGGAGACAGCCTCTGAGGTCACTGGATGAAGATGACCCCAACATTCTACTGGCCATCCAACTGTCACTACAGGACtcacggagggagagagaaatggagagagggatgggaggaggacTGGAAAGAGGCTCTGGTGTGATTGAGGGCCCAGGGCTTGGGTCTGGACAGGGTCTGGATATAGGGCCAGTAATGGGTCCAGGGGTGGGGAGCCTCAGTGAGACTCAGGACCCCTCCAGTGTGGGTGGTTCTCTGGGGGCCAGTGGCTCCTCTAACCTCCCTAGACCAGACCCTAACCAGTCGCTAAATGCTGAGCTGTTAGAGCTAGGAGAAAGTCTGATGAGACTGGGACAAATAACTACTCCATATACCCTAGACAACACTAATATCCCTACGCCATATAGCTTAGATCACACCTACGACCACTACAACCCTTCCCCCAGGTACAGTCAGAGTCAGGACCTTAGCTACACATCTTATACAACTGACCACAGCTATGCTGTTCTGGAACCTGACCTCAGCACACCTTATACACACGGCTACGGTCACACCTGTGATCATAACCAGGACCATACCACTATCAACATTCCCTTCACTCCAGAACACGACCATAATTGTGGTCAAAACCAAAACCGTGGCCATCCCACTATCAATGCCTTCTACAGTTCTGTTCACTGCCAACCCAGCCTCTACACTAAAACATCTCCTTCTCACACAGACCTTACAGCATCTTCTAGCCCTAAACACACAAGCCTTTACCCCTCAGACCCAGAGCCATATGCTATGTTCAGCCTTCCCCATAACCCTGAACCAGACCAAACCATATCTTGCACCCAGGACACACATCCTGACCAGAACCACCACCATTGCTGCCACTCCAGCCACTACACCCCTAACCCAGACCATTACACCCCTAACACAGACCCTTACACCCCTAACCCAGACCCTTACACCCCTAACCCAGACCATTACACCCCTAATCCAGACTCTTACACCCCTAACCCAGACCATTACACCCCTAACCCAGACCCTTACACCCCTAACCCAGACCATtacaaccctaacccagaccattacaaccctaacccagacccttACAACCCTAACCTGGACCCTTACACCCCTAACCCAGACTACACCTCGAATCCTGACCCATGCCGCACTTCCTCAGACCCCCACGGCCTCCTGCTCCCCTCCCCAGACCCAGAACTCGTCTCCCCAGTGGTCCCTCCAGGTGGTCCCTTCACCCCCAGTGACCCAGGCTGCCTGGAGCGCCTGGACCCCTCAGCTGAAGCCCTGCTCCTGGACAACATCATGGCCTggatccaacacacacacccccaggACAGCCCCCAGAACATCGACCTCATCCCCTCAGCTAGCTCCGAGACTGGCTCACCCCCGGAGAAATACTCACCTccggacacagagacagactcaCCCACTGTTTCACTCCAAGATGGTGGGGACCCAAAGAGTGATTCCCCTCCTGACGCCCAGGCCAGTTTCAGTGGGGAGGCCCTAGCCGAGCTACGGCAGGGAGAGGCGGGTAGGGGACAGGCTGGCTCCCCCGGCCCTGGAGACAGCCTGGAGGTTAAAAGACCCAGCACTCTGGATCTGGAGTGTTGTGAGGGTGAGGAGTATGTGGAGTGTGTAGTCACAGGGTTTGTGTCGGACCTGTCACAGGACGcattggacacacacatacactcacacacacactgtggagaTGACAACCTCACTCCTACCAAGACAGACTCAAGCCCCACCGCCTGGGTAGTGGAGGACCAATCACGCCCGGAGTGGGAAGAGCAAGTTCACCTGGTgtgacaacagacagacagatgacagagagcaggaggaagagaggaggagagtgggagcGAGGTAATGATAAGCAGCAGTgacagagatgagggagagaaaagagaggaagagagagtgattAATAGCATTATCAGAGAAAGAGCTTAGGAAAGATTTGGGGATGAAAAGCACTTAGAGGAAAGAACAGGAGAAAAGTCTGACATTTAACATGGTGTGTCCACTTGATTTAGCTTGCTGGGCACCGAAAGCTAATTAGTATATTTGACCAAGTTCTGGTCAGGTCATGTGACCCAGGTCTGGTCAGGTCATGTGACCTAGGTCTGGTCAGGTCATGTGACCCAGGTCTGGTCAGGTCATGTGACCCAGATCTGATCAGGTCATGCAGTGACCAGAGTTGATCAGAGCAGATGAGATGTGTTTAAATACAATCAAATATGAGTGACTTTAGTGATTTTATTGTCCATATCCATTCCACTACTGATGGACTGACTGTATGTGGTCTCCTCAGCCTAAGACCAGGGCGAGTTGTTTTACtgtttattcaacctttatttatccagatCAAAActccatgacagagagagagcgagggagagagagtgggaccgTGACATGGCTACTCTTTAGAAACAGTCCACGGCTGAGTTGATCAGTGTGCCTCATTTTTATTGAGAATCCCCTTTTTTTCATATGGAACCTCAAGCAACGTGCAAAGAATAGTAtgactattattactactatagGGTTGTTTTGTTTTTGACATGGTTTCCTTTCCTCTTGAGATAAGATGTGTTTTTGGAAGCAGCTGTGGTCTGTGGTCATatgtatcaagtgtctcagagtagtggtgctgatctaggaccaggtcctCCCTTTctatataatcttattcattatgatctaaaaggctcaattgatcctagatcagcacttctactctccCAGGTCTTTGACTAGGTACAGGACAGGAAGCTGTTATTTTTCTTGTGTTGGTGTTATAGAGATGGTTAGCACTGGTAGGATGATTATAATATAGTCAACTTTATAGAGATGAATCTGCAGTCTACAAGAGTTTATAATATAATTTCTAAAATCATATTTATCTTATTTAATTGTAATAAGCTGCTTAAATAAAGTAGTCATTGGATATAGAATAACATTTAGAAACGCAACCATGGTTTAACTTAACTGTTGCGTGTAGTGTGCAACCATCtggagtagtgcactagtttataGTAGGGTGCGATGTGACGTGCGCTGATCATACAAAACATGAAATGGAACACTgaagtctggatttggagtgtatttttttgtacaaCACCACTGTTTTAAGTTAAGATAATTGTTTATTTAGTCCAATTTGATtcacactaaggtttttattagatttctttttgttttctttgttttgtattttcttgGTACTTAATTGAAAGTTTCAAGGCCAGTGGCTGTGTCATAGTTTGTAACCCAGGCATCTGATTTTTATATTACTGTACCCTGGCAACCATAAACCTTGTTGTTATTTGCACTTTCATAGGTGATACTTGATCCATTCCCAGTCCATATGACAGACAGTGACGTTCGATGTGGCCAAGGACTGAAAGTATTAGTAAAACGTTTActctcaataaaaaaaatatttaaaaaaaca

Function

NR:

description
ankyrin repeat and IBR domain-containing protein 1-like

GO: NA

KEGG:

id description
K11968 ARIH1; ariadne-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953238.1 True 6176 mRNA 0.51 21 53141523 53173990

Neighbor

gene id symbol gene type direction distance location
LOC110496945 LOC106588722 coding upstream 168 53139151 ~ 53141355 (+)
LOC118941187 NA coding upstream 12986 53122112 ~ 53128537 (+)
LOC110496510 LOC106588740 coding upstream 31619 53077029 ~ 53109904 (+)
si:ch211-199g17.2 LOC106588746 coding upstream 90252 52996763 ~ 53051271 (+)
fkbp9 LOC106588749 coding upstream 223142 52906399 ~ 52918381 (+)
snrpd1 snrpd1 coding downstream 1671 53175661 ~ 53178938 (+)
ggcta LOC106588758 coding downstream 6901 53180891 ~ 53183494 (+)
sh3bp5a LOC106588751 coding downstream 24548 53198538 ~ 53275056 (+)
LOC110496519 LOC106588750 coding downstream 103795 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding downstream 113025 53287015 ~ 53288625 (+)
G1561562 NA non-coding upstream 4997 53135743 ~ 53136526 (+)
G1561433 NA non-coding upstream 99684 53038951 ~ 53041839 (+)
G1561511 NA non-coding upstream 120994 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 237463 52900686 ~ 52904060 (+)
G1561593 LOC106588741 non-coding downstream 118441 53292431 ~ 53299970 (+)
G1561723 NA non-coding downstream 321407 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 347474 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 365784 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 379308 53553298 ~ 53553592 (+)
G1560957 NA other upstream 699582 52441146 ~ 52441941 (+)
G1560911 NA other upstream 785688 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 883993 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 1067494 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 2505957 50633743 ~ 50635566 (+)
G1561544 LOC106588750 other downstream 103800 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 544379 53713836 ~ 53730416 (+)
G1561845 NA other downstream 643174 53817164 ~ 53840871 (+)
G1561856 NA other downstream 698183 53872173 ~ 53876930 (+)

Expression


Co-expression Network