Gene
RNA
| Item | Value |
|---|---|
| gene id | snrpd1 |
| gene name | snrpd1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 53175661 ~ 53178938 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| snrpd1 | Predicted to enable RNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide). |
| description |
|---|
| PREDICTED: small nuclear ribonucleoprotein Sm D1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021572457.2 | False | 653 | mRNA | 0.48 | 4 | 53175661 | 53178938 |
| TU1786576 | True | 591 | TUCP | 0.49 | 4 | 53175722 | 53178937 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496511 | LOC106588739 | coding | upstream | 1671 | 53141523 ~ 53173990 (+) |
| LOC110496945 | LOC106588722 | coding | upstream | 34306 | 53139151 ~ 53141355 (+) |
| LOC118941187 | NA | coding | upstream | 47124 | 53122112 ~ 53128537 (+) |
| LOC110496510 | LOC106588740 | coding | upstream | 65757 | 53077029 ~ 53109904 (+) |
| si:ch211-199g17.2 | LOC106588746 | coding | upstream | 124390 | 52996763 ~ 53051271 (+) |
| ggcta | LOC106588758 | coding | downstream | 1953 | 53180891 ~ 53183494 (+) |
| sh3bp5a | LOC106588751 | coding | downstream | 19600 | 53198538 ~ 53275056 (+) |
| LOC110496519 | LOC106588750 | coding | downstream | 98847 | 53277785 ~ 53307126 (+) |
| LOC110496851 | LOC106588750 | coding | downstream | 108077 | 53287015 ~ 53288625 (+) |
| LOC110496948 | NA | coding | downstream | 225727 | 53404665 ~ 53406505 (+) |
| G1561562 | NA | non-coding | upstream | 39135 | 53135743 ~ 53136526 (+) |
| G1561433 | NA | non-coding | upstream | 133822 | 53038951 ~ 53041839 (+) |
| G1561511 | NA | non-coding | upstream | 155132 | 53019742 ~ 53020529 (+) |
| G1561478 | LOC106588754 | non-coding | upstream | 271601 | 52900686 ~ 52904060 (+) |
| G1561593 | LOC106588741 | non-coding | downstream | 113493 | 53292431 ~ 53299970 (+) |
| G1561723 | NA | non-coding | downstream | 316459 | 53495397 ~ 53495714 (+) |
| G1561712 | NA | non-coding | downstream | 342526 | 53521464 ~ 53524347 (+) |
| G1561739 | NA | non-coding | downstream | 360836 | 53539774 ~ 53541773 (+) |
| G1561745 | LOC106588797 | non-coding | downstream | 374360 | 53553298 ~ 53553592 (+) |
| G1560957 | NA | other | upstream | 733720 | 52441146 ~ 52441941 (+) |
| G1560911 | NA | other | upstream | 819826 | 52355297 ~ 52355835 (+) |
| G1560811 | LOC100846955 | other | upstream | 918131 | 52256636 ~ 52257530 (+) |
| LOC110496482 | LOC106588780 | other | upstream | 1101632 | 52036488 ~ 52083470 (+) |
| G1559041 | thsd7a | other | upstream | 2540095 | 50633743 ~ 50635566 (+) |
| G1561544 | LOC106588750 | other | downstream | 98852 | 53277790 ~ 53288465 (+) |
| LOC110514975 | LOC106588804 | other | downstream | 539431 | 53713836 ~ 53730416 (+) |
| G1561845 | NA | other | downstream | 638226 | 53817164 ~ 53840871 (+) |
| G1561856 | NA | other | downstream | 693235 | 53872173 ~ 53876930 (+) |
| LOC110496545 | LOC106588816 | other | downstream | 1330820 | 54412770 ~ 54510923 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
