ggcta (LOC106588758)


Basic Information

Item Value
gene id ggcta
gene name LOC106588758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53180891 ~ 53183494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572458.2
CTGCTCAAAACCAACCGATTTAGACTCAGCTATTAAGCACGCTATATTTAAGAATGTCTTGATAGCGCACATGAACATTCAAAAATCATGCACTGTGTCTTTAACAGGTTGAGCCCCTTCCAGCCAATGAACCGGACACACTACCCGGAAAAAAGCCGATTGCATGAGTAATAATGGGCTGTAGCTAATTTGTAAATAATTGGGTATATcgctatttatttcacttttattttaacCGGTGATCTTTTTATATAATTCAAAGGCTGACATTCTCGTATGATTGGTAACTTGGCTCATATCGCAAGGTTTTGCTTAGGAAACATGGCAGCAACAGCAGATCACTTCATGTATTTTGCTTTTGGAAGCAACTTGTTGAAGGAGAGACTTCAGCTGGCGAACCCCTCAGCTATATTTCATTGCACCGGCCGACTGAAGCAGAACTACACATTGAACTTTGGTCTGTGGGGGGAGCACATTGATAACCATTGGCATGGAGGAGTAGCAACCATCCAgcagaaagaggggggagaggtgtggGGGGTGGTCTGGAGGATGAGCAACGACCACCTAGCCAGCCTGGACAAgcaggaGGGGGTGGACATGGGTATGTACTTCCCCTTAGAGGTGACAGTGGAGACAGACAACGGGGCACTGCTCTGTAGAACGTACCAGATGAACCGCTTCCACGCCTGTCCCCCCTCGCCACAATACAAACAGGTGGTGTGTTTAGGAGCCCAGCAGAACGGTCTACCAGTGCAGTACATGAGGAGACTAGAAGAGGTTCAGACCAACAACTACAGCGGCCCTTCTATCCTGGACAAGATCTCACAGGTCATTAagtaattctgatatttttttccactaattggtcttttgatttGGTGTTTTGACCAATCGGATCAGctctgaaaagatctgatgtgattagtggaaaaaatatcagaattgggctgcctttgTAAACATAGCCAGAATCCATCTGAAATGACAAccaattgggctctggtcaaaagtggtgcactggcctcccgggtggcgcagtgtgccatcagagtcccttggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacacacaattggcctagcatcgtccgggttagggagggtttggctggtagggatatccttgtctcatcgtgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtatcctccgacacattggtgcggctggcttccgggttggaggcgcgctgtgttaagaagcagtgcggctggttgggttgtgtatcgaaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtagctactacaacaattggataccacgaaaaaggggtaaaaaaaaaagaaaaaaaaagtggtgcactatatagggtgccattttggacaaacacacagacaggcaccaTAAAGACAAATGCATGTGATGTGGCTTTGGAGAGATTTGATGACGAATGGTTCAATTGAAATGGAATGGGGCCTTTGAGAGAAATGGGAGATGTTGTAATGTATTTAATAGATGTATACTGAATGAAGTCCGTTACTTCAGAAATCAATTGATTTAATGTAAATTGTTATTCTTTGTTTCTTAAGAAACGTCTGAAGGATCTCTGCTCCCCAAACTGTATCTGGTCCAATTGTCTTTTCAACAAAACATAATTTTGTAGTCATTAATGACGTTGAACATACAACTATGTATATACAGAATTATCACCATAGTGTCCCAGTACAAATTCTGGAGTTTTATTTGTGCTTTAGTTTTTACTTAATTCAACGAATACAAACTtgtgcaaaatatatatatatatatatatataacaaagaTGCTTGAGTAAATTAAAGGTGTGTTTTAAATCAAA
>XM_021572460.2
CTCAAAACCAACCGATTTAGACTCAGCTATTAAGCACGCTATATTTAAGAATGTCTTGATAGCGCACATGAACATTCAAAAATCATGCACTGTGTCTTTAACAGGTTGAGCCCCTTCCAGCCAATGAACCGGACACACTACCCGGAAAAAAGCCGATTGCATGAGTAATAATGGGCTGTAGCTAATTTGTAAATAATTGGGTATATcgctatttatttcacttttattttaacCGGTGATCTTTTTATATAATTCAAAGGCTGACATTCTCGTATGATTGGTAACTTGGCTCATATCGCAAGGTTTTGCTTAGGAAACATGGCAGCAACAGCAGATCACTTCATGTATTTTGCTTTTGGAAGCAACTTGTTGAAGGAGAGACTTCAGCTGGCGAACCCCTCAGCTATATTTCATTGCACCGGCCGACTGAAGCAGAACTACACATTGAACTTTGGTCTGTGGGGGGAGCACATTGATAACCATTGGCATGGAGGAGTAGCAACCATCCAgcagaaagaggggggagaggtgtggGGGGTGGTCTGGAGGATGAGCAACGACCACCTAGCCAGCCTGGACAAgcaggaGGGGGTGGACATGGGTATGTACTTCCCCTTAGAGGTGACAGTGGAGACAGACAACGGGGCACTGCTCTGTAGAACGTACCAGATGAACCGCTTCCACGCCTGTCCCCCCTCGCCACAATACAAACAGGAGCCCAGCAGAACGGTCTACCAGTGCAGTACATGAGGAGACTAGAAGAGGTTCAGACCAACAACTACAGCGGCCCTTCTATCCTGGACAAGATCTCACAGGTCATTAagtaattctgatatttttttccactaattggtcttttgatttGGTGTTTTGACCAATCGGATCAGctctgaaaagatctgatgtgattagtggaaaaaatatcagaattgggctgcctttgTAAACATAGCCAGAATCCATCTGAAATGACAAccaattgggctctggtcaaaagtggtgcactggcctcccgggtggcgcagtgtgccatcagagtcccttggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacacacaattggcctagcatcgtccgggttagggagggtttggctggtagggatatccttgtctcatcgtgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtatcctccgacacattggtgcggctggcttccgggttggaggcgcgctgtgttaagaagcagtgcggctggttgggttgtgtatcgaaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtagctactacaacaattggataccacgaaaaaggggtaaaaaaaaaagaaaaaaaaagtggtgcactatatagggtgccattttggacaaacacacagacaggcaccaTAAAGACAAATGCATGTGATGTGGCTTTGGAGAGATTTGATGACGAATGGTTCAATTGAAATGGAATGGGGCCTTTGAGAGAAATGGGAGATGTTGTAATGTATTTAATAGATGTATACTGAATGAAGTCCGTTACTTCAGAAATCAATTGATTTAATGTAAATTGTTATTCTTTGTTTCTTAAGAAACGTCTGAAGGATCTCTGCTCCCCAAACTGTATCTGGTCCAATTGTCTTTTCAACAAAACATAATTTTGTAGTCATTAATGACGTTGAACATACAACTATGTATATACAGAATTATCACCATAGTGTCCCAGTACAAATTCTGGAGTTTTATTTGTGCTTTAGTTTTTACTTAATTCAACGAATACAAACTtgtgcaaaatatatatatatatatatatataacaaagaTGCTTGAGTAAATTAAAGGTGTGTTTTAAATCAAA
>XM_021572459.2
ATGAACATTCAAAAATCATGCACTGTGTCTTTAACAGGTTGAGCCCCTTCCAGCCAATGAACCGGACACACTACCCGGAAAAAAGCCGATTGCATGAGTAATAATGGGCTGTAGCTAATTTGTAAATAATTGGGTATATcgctatttatttcacttttattttaacCGGTGATCTTTTTATATAATTCAAAGGCTGACATTCTCGTATGATTGGTAACTTGGCTCATATCGCAAGGTTTTGCTTAGGAAACATGGCAGCAACAGCAGATCACTTCATGTATTTTGCTTTTGGAAGCAACTTGTTGAAGGAGAGACTTCAGCTGGCGAACCCCTCAGCTATATTTCATTGCACCGGCCGACTGAAGAACTACACATTGAACTTTGGTCTGTGGGGGGAGCACATTGATAACCATTGGCATGGAGGAGTAGCAACCATCCAgcagaaagaggggggagaggtgtggGGGGTGGTCTGGAGGATGAGCAACGACCACCTAGCCAGCCTGGACAAgcaggaGGGGGTGGACATGGGTATGTACTTCCCCTTAGAGGTGACAGTGGAGACAGACAACGGGGCACTGCTCTGTAGAACGTACCAGATGAACCGCTTCCACGCCTGTCCCCCCTCGCCACAATACAAACAGGTGGTGTGTTTAGGAGCCCAGCAGAACGGTCTACCAGTGCAGTACATGAGGAGACTAGAAGAGGTTCAGACCAACAACTACAGCGGCCCTTCTATCCTGGACAAGATCTCACAGGTCATTAagtaattctgatatttttttccactaattggtcttttgatttGGTGTTTTGACCAATCGGATCAGctctgaaaagatctgatgtgattagtggaaaaaatatcagaattgggctgcctttgTAAACATAGCCAGAATCCATCTGAAATGACAAccaattgggctctggtcaaaagtggtgcactggcctcccgggtggcgcagtgtgccatcagagtcccttggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacacacaattggcctagcatcgtccgggttagggagggtttggctggtagggatatccttgtctcatcgtgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtatcctccgacacattggtgcggctggcttccgggttggaggcgcgctgtgttaagaagcagtgcggctggttgggttgtgtatcgaaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtagctactacaacaattggataccacgaaaaaggggtaaaaaaaaaagaaaaaaaaagtggtgcactatatagggtgccattttggacaaacacacagacaggcaccaTAAAGACAAATGCATGTGATGTGGCTTTGGAGAGATTTGATGACGAATGGTTCAATTGAAATGGAATGGGGCCTTTGAGAGAAATGGGAGATGTTGTAATGTATTTAATAGATGTATACTGAATGAAGTCCGTTACTTCAGAAATCAATTGATTTAATGTAAATTGTTATTCTTTGTTTCTTAAGAAACGTCTGAAGGATCTCTGCTCCCCAAACTGTATCTGGTCCAATTGTCTTTTCAACAAAACATAATTTTGTAGTCATTAATGACGTTGAACATACAACTATGTATATACAGAATTATCACCATAGTGTCCCAGTACAAATTCTGGAGTTTTATTTGTGCTTTAGTTTTTACTTAATTCAACGAATACAAACTtgtgcaaaatatatatatatatatatatataacaaagaTGCTTGAGTAAATTAAAGGTGTGTTTTAAATCAAA

Function

NR:

description
gamma-glutamylcyclotransferase-like isoform X2

GO: NA

KEGG:

id description
K00682 GGCT; gamma-glutamylcyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572458.2 False 1965 mRNA 0.45 4 53180891 53183494
XM_021572460.2 False 1949 mRNA 0.45 4 53180894 53183494
XM_021572459.2 True 1892 mRNA 0.45 4 53180961 53183494

Neighbor

gene id symbol gene type direction distance location
snrpd1 snrpd1 coding upstream 1953 53175661 ~ 53178938 (+)
LOC110496511 LOC106588739 coding upstream 6901 53141523 ~ 53173990 (+)
LOC110496945 LOC106588722 coding upstream 39536 53139151 ~ 53141355 (+)
LOC118941187 NA coding upstream 52354 53122112 ~ 53128537 (+)
LOC110496510 LOC106588740 coding upstream 70987 53077029 ~ 53109904 (+)
sh3bp5a LOC106588751 coding downstream 15044 53198538 ~ 53275056 (+)
LOC110496519 LOC106588750 coding downstream 94291 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding downstream 103521 53287015 ~ 53288625 (+)
LOC110496948 NA coding downstream 221171 53404665 ~ 53406505 (+)
itgb8 LOC106588794 coding downstream 314227 53497721 ~ 53514974 (+)
G1561562 NA non-coding upstream 44365 53135743 ~ 53136526 (+)
si:ch211-199g17.2 LOC106588746 non-coding upstream 129620 52996763 ~ 53051271 (+)
G1561433 NA non-coding upstream 139052 53038951 ~ 53041839 (+)
G1561511 NA non-coding upstream 160362 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 276831 52900686 ~ 52904060 (+)
G1561593 LOC106588741 non-coding downstream 108937 53292431 ~ 53299970 (+)
G1561723 NA non-coding downstream 311903 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 337970 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 356280 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 369804 53553298 ~ 53553592 (+)
G1560957 NA other upstream 738950 52441146 ~ 52441941 (+)
G1560911 NA other upstream 825056 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 923361 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 1106862 52036488 ~ 52083470 (+)
G1561544 LOC106588750 other downstream 94296 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 534875 53713836 ~ 53730416 (+)
G1561845 NA other downstream 633670 53817164 ~ 53840871 (+)
G1561856 NA other downstream 688679 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 1326264 54412770 ~ 54510923 (+)

Expression


Co-expression Network