LOC110496519 (LOC106588750)


Basic Information

Item Value
gene id LOC110496519
gene name LOC106588750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53277785 ~ 53307126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572466.2
GTTCCTGGGCAATAGTCATTCCGCCATGTCCCTCCGTGTCCTCCTGGCAGTGGTGGTTGCTGTTCTCTATCTGTCCCCAGTAACCTTAACCTGGGCTGGGGACAGGACAGAGGGGACTCCTGGTCCATCTTACGTGGCCGCAGTCTACGAGCACAAGGTGATTCTGAACCCAGAGCCGCATGTGCCTCTGTCTCGGACCGCGGCGCTCGAGCACATGATGAGGAACCTGAAGGTCTATGAGGAGCAGGCCGAACGGGCAGCGGAACAGGGGGCTCAGATCATAGTATTTCCAGAAGACGGTATCCATGGATTCAACTTCAGTCGTCTGTCCATCTCTGGTTACCTAGAGACCATCCCTGACCCACTGACTGAGGACTGGAACCCCTGTACACAACCTGACAGACACAATCACACTGAGGTCCTCCAGAGTTTGAGCTGCATGGCTCGACGTCACCAACTGTACCTGGTGGCAAACATGCCTGACCTCCAGCCCTGCCCTCTGACCTCTCATCCCCACCTTGACCCCTCTCAAACTCCCTGCCCCCCTGATGGGCGCTGGCAGTTCAACACTGATGTAGTCTTCAGGTCTGATGGTTCCCTGGCGGCTCGCTACCACAAACAAAACCTGTTCTTCGAGAAGGAATTCGATACCCCGCCCAGACTAGAGGTGGTGACCTTTGACACGCCGTTCGCCGGACGGTTTGGAGTGTTCACCTGCTTTGACATCCTGTTTCACGACCCTACTGTCAGACTACTGGAGAAGGGTATCAGACAGATGATCTTCCCCACAGCCTGGATGAATCTGCTTCCTCTACTAACAGCAGTTCAGATCCAGAGAGCGGTCAGTCTGGGAGCTAACGTCACTCTGCTGGCGGCTAACCTCAGGCATGACAGCAAGGCTATGACGGGCAGCGGCATCTACACCCCTAGTACTTCCATCTATCACCACGCCTTCCACCACCCCGGGGAGCCAGAGGAGGGGAAGCTGCTGGTGTTGAGGATACCTGTACTGGACAGTGACTGGCTGGCAACACAGAAGCAGGCAaaggggcagggagagacaggCGGACAGGGTGAGGCAAAGgggcagggggagacaggaggacaggGTGAGGGTGAACCTCTCTCCGCTTCTCTTCCTACCTTCTCTCCCAatccctccccatccccctctcactTCATCTCCTCTATGATGTGTGACCCATTCTCCTTCGTCCTGCTGCATGGTTCAGAGGGCCAGCTGACTGTGTGTGACGGTCCTCTCTGCTGCCACCTGCAGTACCGACGGTCCCCACAGGGTGGCAATACGGAGCTCTATGCTCTAGGGGCATTTGCTGGCAATCACACGGCTGACGGACACTTCGCCTTGCAGGTGTGTGCGTTGGTCCGGTGCTCGGGGTCAGAGGTCAGCTCCTGTGGAAAGGGAGTGGAGGAGGCAGAGTCTAGAGTGGACTTCCGGTTGGAGGGGAAGTTCGGAACGCGGTATGTTTACCCATCGTTGCTAGGTAGTGGCATGGTTGTAGATGGACCCGACCGGATCGAGAAGACCACAGATGGTCGAGTGACTATGGAACACTCAGGGATGTCCGTCGGACTGGTGACCGCATGTCTCTACGGCAGGGTGTACGACCAGGACTAGGGTGCGTGTGTGAaagtgtgagagcgagagagagagagaaaataaagtaaataaatgTTCTCCAACCTC
>XM_036953242.1
GTTCCTGGGCAATAGTCATTCCGCCATGTCCCTCCGTGTCCTCCTGGCAGTGGTGGTTGCTGTTCTCTATCTGTCCCCAGTAACCTTAACCTGGGCTGGGGACAGGACAGAGGGGACTCCTGGTCCATCTTACGTGGCCGCAGTCTACGAGCACAAGGTGATTCTGAACCCAGAGCCGCATGTGCCTCTGTCTCGGACCGCGGCGCTCGAGCACATGATGAGGAACCTGAAGGTCTATGAGGAGCAGGCCGAACGGGCAGCGGAACAGGGGGCTCAGATCATAGTATTTCCAGAAGACGGTATCCATGGATTCAACTTCAGTCGTCTGTCCATCTCTGGTTACCTAGAGACCATCCCTGACCCACTGACTGAGGACTGGAACCCCTGTACACAACCTGACAGACACAATCACACTGAGGTCCTCCAGAGTTTGAGCTGCATGGCTCGACGTCACCAACTGTACCTGGTGGCAAACATGCCTGACCTCCAGCCCTGCCCTCTGACCTCTCATCCCCACCTTGACCCCTCTCAAACTCCCTGCCCCCCTGATGGGCGCTGGCAGTTCAACACTGATGTAGTCTTCAGGTCTGATGGTTCCCTGGCGGCTCGCTACCACAAACAAAACCTGTTCTTCGAGAAGGAATTCGATACCCCGCCCAGACTAGAGGTGGTGACCTTTGACACGCCGTTCGCCGGACGGTTTGGAGTGTTCACCTGCTTTGACATCCTGTTTCACGACCCTACTGTCAGACTACTGGAGAAGGGTATCAGACAGATGATCTTCCCCACAGCCTGGATGAATCTGCTTCCTCTACTAACAGCAGTTCAGATCCAGAGAGCGGTCAGTCTGGGAGCTAACGTCACTCTGCTGGCGGCTAACCTCAGGCATGACAGCAAGGCTATGACGGGCAGCGGCATCTACACCCCTAGTACTTCCATCTATCACCACGCCTTCCACCACCCCGGGGAGCCAGAGGAGGGGAAGCTGCTGGTGTTGAGGATACCTGTACTGGACAGTGACTGGCTGGCAACACAGAAGCAGGCAaaggggcagggagagacaggCGGACAGGGTGAGGCAAAGgggcagggggagacaggaggacaggGTGAGGGTGAACCTCTCTCCGCTTCTCTTCCTACCTTCTCTCCCAatccctccccatccccctctcactTCATCTCCTCTATGATGTGTGACCCATTCTCCTTCGTCCTGCTGCATGGTTCAGAGGGCCAGCTGACTGTGTGTGACGGTCCTCTCTGCTGCCACCTGCAGTACCGACGGTCCCCACAGGGTGGCAATACGGAGCTCTATGCTCTAGGGGCATTTGCTGGCAATCACACGGCTGACGGACACTTCGCCTTGCAGGTGTGTGCGTTGGTCAGGTGCTCGGGGTCAGAGGTCAGCTCCTGTGGAAAGGGAGTGGAGGAGGCAGAGTCTAGAGTGGACTTCCGGTTGGAGGGGAAGTTCGGAACGCGGTACGTTTACCCATCGTTGCTAGGTAGTGGCATGGTTGTAGATGGACCCGACCGGATCGAGAAGACCACAGATGGTCGAGTGACCATGGAACACTCAGGGATGTCCGTCGGATTGGTGACCGCATGTCTCTACGGCAGGGTGTACGACCAGGACTAgggtgcgtgtgtgagtgtgaaagtgtgagagagagagagagaatg

Function

NR:

description
biotinidase-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572466.2 False 1708 mRNA 0.56 6 53277785 53280838
XM_036953242.1 True 1683 mRNA 0.57 8 53277785 53307126

Neighbor

gene id symbol gene type direction distance location
sh3bp5a LOC106588751 coding upstream 2729 53198538 ~ 53275056 (+)
ggcta LOC106588758 coding upstream 94291 53180891 ~ 53183494 (+)
snrpd1 snrpd1 coding upstream 98847 53175661 ~ 53178938 (+)
LOC110496511 LOC106588739 coding upstream 103795 53141523 ~ 53173990 (+)
LOC110496945 LOC106588722 coding upstream 136430 53139151 ~ 53141355 (+)
LOC110496948 NA coding downstream 97539 53404665 ~ 53406505 (+)
itgb8 LOC106588794 coding downstream 190595 53497721 ~ 53514974 (+)
LOC110496949 LOC106588787 coding downstream 311696 53618822 ~ 53621390 (+)
klhl7 klhl7 coding downstream 349100 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 368367 53675493 ~ 53703310 (+)
G1561562 NA non-coding upstream 141259 53135743 ~ 53136526 (+)
si:ch211-199g17.2 LOC106588746 non-coding upstream 226514 52996763 ~ 53051271 (+)
G1561433 NA non-coding upstream 235946 53038951 ~ 53041839 (+)
G1561511 NA non-coding upstream 257256 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 373725 52900686 ~ 52904060 (+)
G1561723 NA non-coding downstream 188271 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 214338 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 232648 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 246172 53553298 ~ 53553592 (+)
G1561769 NA non-coding downstream 279244 53586370 ~ 53587352 (+)
G1560957 NA other upstream 835844 52441146 ~ 52441941 (+)
G1560911 NA other upstream 921950 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1020255 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 1203756 52036488 ~ 52083470 (+)
LOC110514975 LOC106588804 other downstream 411243 53713836 ~ 53730416 (+)
G1561845 NA other downstream 510038 53817164 ~ 53840871 (+)
G1561856 NA other downstream 565047 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 1202632 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1831522 55138648 ~ 55139231 (+)

Expression


Co-expression Network