LOC110496851 (LOC106588750)


Basic Information

Item Value
gene id LOC110496851
gene name LOC106588750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53287015 ~ 53288625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496851
ACCCGGGCTGGGGACAGGACAGAGGGGACTTCCTGTCCATCCTACGTGGCCACAGTCTACGAGCATCAGGTGATTCTGAACCCAGAGCCGCATGTGCCTCTGTCTCGGGCCGGGGCGCTCGAGCACACGATGAGGAACCTGAAGACCTATGAGGAGCAGGCCGCACGGGCAGCAGAACAGGGGCTCAGATCATAGTATTTCCAGAAGACGGTATCCATGGATTCAACTTCAGTCGTCTGTCCATCTCTGGTTACCTAGAGACCATCCCTGACCCACTGACTGAGGACTGGAACCCCTGTACACAACCTGACAGACACAATCACACTGAgGTCCTCCAGAGTTTGAGCTGCATGGCTCAACGCCACCAACTGTACCTGGTGGCAAACATGCCTGACCTCCAGCCCTGCCCTCTGACCTCTCATCCCCACCTTGACCCCTCTCAAACTCCCTGCCCCCCTGATGGGCGCTGGCAGTTCAACACTGATGTAGTCTTCAGGTCTGATGGTTCCCTGGCGGCTCGCTACCACAAACAAAACCTGTTCTTCGAGAAGGAATTCGATACCCCGCCCAGACTAGAGGTGGTGACCTTTGACACGCCGTTCGGCGGACGGTTTGGAGTGTTCACCTGCTTTGACATCCTGTTTCACGACCCTACTGTCAGACTACTGGAGAAGGGTATCAGACAGATGATCTTCCTCATAGCCTGGATGAATCTGCTTCCTCTACTAACAGCAGTTCAGATCCAGAGAGCGGTCAGTCTGGGAGCTAACGTCACTCTGCTGGCGGCTAACCTCAGGCATGACAGCAAGGCTATGACGGGCAGCGGCATCTACACCCCTAGTACTTCCATCTATCACCACGCCTTCCACCACCCTGGGGAGCCAGAGGAGGGGAAGCTGCTGGTGTTGAGGATACCTGTACTGGACAGTGACTGGCTGGCAACACAGAAGCAGGCAAAGgggcagggggagacaggaggacaggGTGAGGCAAAGGGGCAGGGAGAGCCcggaggacagggggagacaggaggagagggtgaaCCTCCCTCTGCCGcagttccttccctctctcccactccctcccccttTCAATGCCTTTATGGCGGGTGACCTGTTCTTCTTTGC

Function

NR:

description
biotinidase-like

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496851 True 1127 mRNA 0.57 4 53287015 53288625

Neighbor

gene id symbol gene type direction distance location
sh3bp5a LOC106588751 coding upstream 11959 53198538 ~ 53275056 (+)
ggcta LOC106588758 coding upstream 103521 53180891 ~ 53183494 (+)
snrpd1 snrpd1 coding upstream 108077 53175661 ~ 53178938 (+)
LOC110496511 LOC106588739 coding upstream 113025 53141523 ~ 53173990 (+)
LOC110496945 LOC106588722 coding upstream 145660 53139151 ~ 53141355 (+)
LOC110496948 NA coding downstream 116040 53404665 ~ 53406505 (+)
itgb8 LOC106588794 coding downstream 209096 53497721 ~ 53514974 (+)
LOC110496949 LOC106588787 coding downstream 330197 53618822 ~ 53621390 (+)
klhl7 klhl7 coding downstream 367601 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 386868 53675493 ~ 53703310 (+)
G1561562 NA non-coding upstream 150489 53135743 ~ 53136526 (+)
si:ch211-199g17.2 LOC106588746 non-coding upstream 235744 52996763 ~ 53051271 (+)
G1561433 NA non-coding upstream 245176 53038951 ~ 53041839 (+)
G1561511 NA non-coding upstream 266486 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 382955 52900686 ~ 52904060 (+)
G1561593 LOC106588741 non-coding downstream 3806 53292431 ~ 53299970 (+)
G1561723 NA non-coding downstream 206772 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 232839 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 251149 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 264673 53553298 ~ 53553592 (+)
G1560957 NA other upstream 845074 52441146 ~ 52441941 (+)
G1560911 NA other upstream 931180 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1029485 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 1212986 52036488 ~ 52083470 (+)
LOC110514975 LOC106588804 other downstream 429744 53713836 ~ 53730416 (+)
G1561845 NA other downstream 528539 53817164 ~ 53840871 (+)
G1561856 NA other downstream 583548 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 1221133 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1850023 55138648 ~ 55139231 (+)

Expression


Co-expression Network