LOC110496947 (LOC106588730)


Basic Information

Item Value
gene id LOC110496947
gene name LOC106588730
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53392686 ~ 53395229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572948.2
agagaggagagcaaacAGGACTGAATGACCCTCAGGTTGGACTGGCTCTCCTCTTCACTACCTCATTAATGCTTGAAGCGTTCAGACGAACAACACATCAAATGGTGGGCCCGACCTGAGGCTACTACTCTCCTATCCAGCTCAGTTCACTTCCATGGAGATCAGCTCACAGTTCACTTCTGAAATGGACTCCGTTTAGAAGTATAAGGACATGAAAGGCGTGGcgctgggggagaggagagaagggatttATTAAAACAGCAGGACAGATGACGGTTTGGCGGTTGGACTCGAGCCAAAGAGGAACTCGGAACGCACCCATTCGCAGCCTGACAGGATTTAGAAACATCAGGTGGGGACTGGACAGCTATTCAAAAATCATAACAAGAACATTAAACAAGATTGGTGTGTCTTTCATCCAATATTTTGGCAAAAAGATTTTACTACACTTTTTAAATTAAACTCATGATCCTTTGACCCCAACTGCCTACATAGGATTTGAAAATCTGGAATAACGGTAGGAGGATTGATGTTTACCACCACAATCAAAGCAGGCAACTGTGTCGGTTATCATCAGGCTTAAAGTGAATGGTGTTGGAGCGTTTACCTTCATGGAGCCAGACCCTAATCTAGTCACGGCTCAGATTATAGATTATTGTGCTTGACTGAGTTCCTAAAGTAACAGGACTATATATTCATTAAATGAACTCTCCCTccagacagagaggctgctgAAGTCGTGAGTcgtgagtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttataaatgGAGAGGCAGGGCCGTCTTGGGGACTCGGCACTGTATGACTTTGTCAGTGATATAAACCTCATGGAGATTCACCCAAAGTCCACTTCGGGTTCAAAACAGCTCATGGACAGCTTTCTCCCAGTCACTGGCTACCGGGGCCGGTACTACAACCTCTCCTATGTTAACGGGAGCCACCGGGAAACAGGTACAAGCGAGGGGGAACAAACCGGACACGGACATCCCCTGCATGAGATGGCCACAGGGAGCACATCTGCCTACACCTATTACAGCCCAggctctttctcacacacatctcacacacacacctcagacacacacaccgggCGGTCGAAGCGGAGGCGTGTGATCAATGTGGGCCAGCGTCAGGCGGCGAACGTccgggagaggaagaggatgttCAGTCTCAACGAGGCATTTGATGAGCTGCGGAGAAAAGTTCCGACCTTTGCTTACGAGAAAAGGCTGTCACGCATCGAGACGCTCCGCCTCGCCATCGTTTACATCTCCTTCATGACGGACCTGTTAGAGAacacctgacctgatcaggatcACATAGATCCATCAGGGTTATCAGAGCCAGGTTGATTAATCAGACTGGTTAGTTTGATTGATGCTTCACCTCGGCATCGTTTACAACTCCTTCATGACAGACCTTTCAGAGAACACCTGACCTGATCTATCAGGGTGATCAGAACcagattgattgattaattggtTAATTGATCAGATATTCCGTTTGATTACATTGATTATATCATATCTATTTATGGAATATAAAGTTTTAGAATGGGGCTATGGTTGTCAATTAACATATATACATTTAATATCAAGTAGCTATTTATGCTGTTTTTATAGTGTTGTAGAAATGTGTTATTAACATTATCCCAAGTTAAATGATGTGTAccagagcaacaacaaaaaacacttgGTTTGTTTTAATAGGTAAAACTGGGTTGAATTTCATGGATTTAATTATAATGGGAAATCAAAGAGATTAGAAAACttgttataaaaaaatatgtggGTTAGGGGAGGGAACAACAGGATCCAACCCAACGGGGTTAGTCTGTGCATAATAAGGGGATTCAGATAGGGACAGATTTACTTCTCACGTTTATGTATCTATCGAGGTGCTAATTGTATGAGAGGGTTTCAGGGTAGAGATAAAAATGTTGGGTAGGAGGGTGATTAGAGAGATTTacccagaggaggctggtgggaggagctataggaggacgggctcattagAATGTCTGgcatggaatcaatggaacggtatcaaacacatcaaacatatggaaaacacatgtttgactccgttccatatataccactccagccattacaataagcACATTCTCCTATaatcctcccaccagcctcctctggattTACCACTTAGGGAAAAGTTACCTCGTCAGAacccactgtgtgtgtttgtgtttgtgtttgtgtttgtgtttgtgtttgtgtttgtgggtgggtgggtgtgtgtgtgtgtggaatgccTGGGTCAGCAACTTTTATAGGAGAGAGTCCGCCACCTAATGGCCAATACAGTCCCTTTAGAAAGTATCCCTTgtctttttccatattttgttgtgtttcagcgtgaatttaaaattgattacatttagattttttggtccctggtctacacacaataccccataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K22400 FERD3L; Fer3-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572948.2 True 2544 mRNA 0.44 1 53392686 53395229

Neighbor

gene id symbol gene type direction distance location
snx13 LOC106588736 coding downstream 7145 53357729 ~ 53385541 (-)
LOC110496518 LOC106588741 coding downstream 42239 53292413 ~ 53350447 (-)
mturn LOC106588759 coding downstream 197677 53188075 ~ 53195009 (-)
LOC110496514 LOC106588757 coding downstream 204949 53183343 ~ 53187737 (-)
LOC110496850 LOC106588723 coding downstream 377388 52918684 ~ 53015298 (-)
LOC110496852 LOC106588729 coding upstream 25877 53421106 ~ 53431824 (-)
LOC110496853 LOC106588795 coding upstream 121996 53517225 ~ 53530465 (-)
LOC110496522 LOC106588796 coding upstream 136693 53531922 ~ 53537779 (-)
LOC110496523 LOC106588797 coding upstream 144502 53539731 ~ 53597146 (-)
tomm7 NA coding upstream 228489 53621900 ~ 53628443 (-)
G1562623 NA non-coding downstream 53056 53331774 ~ 53339630 (-)
G1562519 NA non-coding downstream 104163 53279501 ~ 53288523 (-)
G1562522 snrpd1 non-coding downstream 213751 53175708 ~ 53178935 (-)
G1562576 NA non-coding downstream 245766 53141638 ~ 53146920 (-)
G1562568 NA non-coding downstream 275917 53116542 ~ 53116769 (-)
G1562701 NA non-coding upstream 94971 53490200 ~ 53491431 (-)
G1562682 NA non-coding upstream 114938 53510167 ~ 53511895 (-)
G1562729 NA non-coding upstream 307863 53703092 ~ 53730527 (-)
LOC110496534 NA non-coding upstream 308536 53703762 ~ 53705633 (-)
G1561279 NA other downstream 744909 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1035376 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1142197 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1209479 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1937401 51381731 ~ 51455285 (-)
G1562762 NA other upstream 203421 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 357177 53752406 ~ 53752683 (-)
G1562828 NA other upstream 479181 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 494480 53887137 ~ 53895002 (-)

Expression


Co-expression Network