LOC110496852 (LOC106588729)


Basic Information

Item Value
gene id LOC110496852
gene name LOC106588729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53421106 ~ 53431824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953246.1
actggaggGCACTTGGGTCGGGTCGCGGAAGGGTGTTGAATGTGTCTGCGCAAGCGTTTAAGCCCCATGGACAGCAACCGCGTGCCAGTCTCGTTTGCGACCGTTCAGAGCATAATGCTCTCCTCTCATTATTGACCGGAGGAGCTCCCGTTATCAGCAACAGCAAACAGACGACTCACTTTTGGATTTGATCCAGCCTTTATTCATGCAGGTTAGTCTCGATAAAAATAGGtagtaaaaaaataacatttactCGACATGACAGAGATGTCCGTGGAAGGCAACCTACTCTACATTTCAAGCGGATTTACCTGATCTCCTGCCCAGAACTTTCCTCATCAGGGATATGCACATCAAGCCGCTCTCCGAGGGCtgactccctctcctcctctgtccgcCGGCGTTGGATCCTCCAGGGTCGGGTTGCTAGTTGGCACAAGTACATTATAAATGTTTTGAAATGGGGTGAAACCAGAAGGTACCTGAACTTATCCAGGTCATCTATATTTAACCAGGACAGTCCACTTATCAACAACCGTGACTGTTTTCCGGGGAGCAGCCTATTGTTGTTTTTCCGTTTAAAAAAGTTTTGCTGCCAACCCGTGTCCTCCTGACTGAAGCCGACTTAGGAGGGCAGACAGGCGGACTGGTCTCCAGGAGGATGCCTGGGCAGGATGTGTTCCAGCCGGAAAATTCTGTGGAGCCTGCTGCTGCTGTCAGTGTTGGAGGTGGGGCTGGGGGTCTCCAGTATCGTCCTGGGAGCCGTTGGGCTCAGCCGGGTCAGGGAGGAACACAAACCACAGCAAGGAGATGCTTCACCTATCTGGAGTGGCCTGTGTtttctcATCTGTGGGATGTGTGGAGTCCTGTGTGCTAGGAAGAGGACTGGACTCATCatgatTCTGTTCTCAGCCTGCTGTATCTGTGGTCTGATTGGAGGGATTCTCAACTTCCAGTTCGTTCGGGCGTTGGCACGACGACCGGACTCTCTCCGCTCGCTACACCTGGCAGccatgaccattgcctgcctggGTATCTCTTCCTGTACTCTCTCTACCTGGTTGACCTGTCGTCTGGCCAGCTCAGAACAACAGAGGATGTTTCTGGAGAGAGAACACTCACTGCACCACTCACATGAGATGGCTGAGAAGGAACCATACACACACGGATCTTTTGTAAGAAACAAACACACGCTCGCATGCATGCGTGCTCACACATTGCTACTGATTTCtcctaatttgtgtgtgtgtgtgctttcatgTATGCATGAGTGTGTTTCTAACAGGAGATTCTGGACAACTCCAGCAACGGGATTCCTCAGATCTCCTACAACAGCAACACCACCTCTCTTTGACAACAGACACACATTGTTGCCCTGACAACAGACACACCTTGTTGCCCTGACAATGGATACACCTTGTTGCCCTGACAATGGACACACCTTGTTGCCCTGATAACAGACACACCTCGTTCTGCTGACCATGGGGTGGTATCATCCAACAGAGCTGAGCAGCACTATTACACAGTTGTGTGTGGAGAACTTCAGCACAGAAATTAACGCTCTTCTTGGACAAGTTGTTACTAGTTCTGATAGTCCCAACAAACAGTCACATGACCTCATGTGCATGCAATCAATTTgtaatctctctctatctctctctctctggctataTGAATGCAGGTATACTGTGTTTGAAGGAAAATGCTATAGCTATCTGATGTAGAGCAGAATATGGAATGCTTTAAATATTATATATGCAACCAACGATGCAAACTGAATATCAGTGGTGGCCAACCATCCTCCTGGGTAGCTACTGGGTTTGCAGGCTTATGCTCcagccctgctctaacacacATAATTAAGTTAATCAGGATCCTGGAGACTGAACACCAAGCTCTCAAGGAGGTGGGTTGGCTAACCCTGCTGTATATTCATGCTTGTATATCAGGAAAACAAACATTATCTATGGAGTGACAATATGTTTCTTTAGGCTTCTATAAAACACACATAAAACTCTGTAAACGTTAGATGGTGTTGTAGATTTCATAACCAgttccagagacagacagacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcaggcaTCCTTTCTGATATTGAATTAGAGGAGACACACTTTCTGCTAAGGGGACTATTGTCTGTGGGAGTACAAGATATTGATCTCACAcgccagtgtgtgtgcgtgcgtgcatgctaATTGAGCATTAAATCAAA
>XM_036953247.1
actggaggGCACTTGGGTCGGGTCGCGGAAGGGTGTTGAATGTGTCTGCGCAAGCGTTTAAGCCCCATGGACAGCAACCGCGTGCCAGTCTCGTTTGCGACCGTTCAGAGCATAATGCTCTCCTCTCATTATTGACCGGAGGAGCTCCCGTTATCAGCAACAGCAAACAGACGACTCACTTTTGGATTTGATCCAGCCTTTATTCATGCAGGTTAGTCTCGATAAAAATAGGtagtaaaaaaataacatttactCGACATGACAGAGATGTCCGTGGAAGGCAACCTACTCTACATTTCAAGCGGATTTACCTGATCTCCTGCCCAGAACTTTCCTCATCAGGGATATGCACATCAAGCCGCTCTCCGAGGGCtgactccctctcctcctctgtccgcCGGCGTTGGATCCTCCAGGGTCGGGTTGCTAGTTGGCACAAGTACATTATAAATGTTTTGAAATGGGGTGAAACCAGAAGGTACCTGAACTTATCCAGGTCATCTATATTTAACCAGGACAGTCCACTTATCAACAACCGTGACTGTTTTCCGGGGAGCAGCCTATTGTTGTTTTTCCGTTTAAAAAAGTTTTGCTGCCAACCCGTGTCCTCCTGACTGAAGCCGACTTAGGAGGGCAGACAGGCGGACTGGTCTCCAGGAGGATGCCTGGGCAGGATGTGTTCCAGCCGGAAAATTCTGTGGAGCCTGCTGCTGCTGTCAGTGTTGGAGGTGGGGCTGGGGGTCTCCAGTATCGTCCTGGGAGCCGTTGGGCTCAGCCGGGTCAGGGAGGAACACAAACCACAGCAAGGAGATGCTTCACCTATCTGGAGTGGCCTGTGTtttctcATCTGTGGGATGTGTGGAGTCCTGTGTGCTAGGAAGAGGACTGGACTCATCatgatTCTGTTCTCAGCCTGCTGTATCTGTGGTCTGATTGGAGGGATTCTCAACTTCCAGTTCGTTCGGGCGTTGGCACGACGACCGGACTCTCTCCGCTCGCTACACCTGGCAGccatgaccattgcctgcctggGTATCTCTTCCTGTACTCTCTCTACCTGGTTGACCTGTCGTCTGGCCAGCTCAGAACAACAGAGGATGTTTCTGGAGAGAGAACACTCACTGCACCACTCACATGAGATGGCTGAGAAGGAACCATACACACACGGATCTTTTGAGATTCTGGACAACTCCAGCAACGGGATTCCTCAGATCTCCTACAACAGCAACACCACCTCTCTTTGACAACAGACACACATTGTTGCCCTGACAACAGACACACCTTGTTGCCCTGACAATGGATACACCTTGTTGCCCTGACAATGGACACACCTTGTTGCCCTGATAACAGACACACCTCGTTCTGCTGACCATGGGGTGGTATCATCCAACAGAGCTGAGCAGCACTATTACACAGTTGTGTGTGGAGAACTTCAGCACAGAAATTAACGCTCTTCTTGGACAAGTTGTTACTAGTTCTGATAGTCCCAACAAACAGTCACATGACCTCATGTGCATGCAATCAATTTgtaatctctctctatctctctctctctggctataTGAATGCAGGTATACTGTGTTTGAAGGAAAATGCTATAGCTATCTGATGTAGAGCAGAATATGGAATGCTTTAAATATTATATATGCAACCAACGATGCAAACTGAATATCAGTGGTGGCCAACCATCCTCCTGGGTAGCTACTGGGTTTGCAGGCTTATGCTCcagccctgctctaacacacATAATTAAGTTAATCAGGATCCTGGAGACTGAACACCAAGCTCTCAAGGAGGTGGGTTGGCTAACCCTGCTGTATATTCATGCTTGTATATCAGGAAAACAAACATTATCTATGGAGTGACAATATGTTTCTTTAGGCTTCTATAAAACACACATAAAACTCTGTAAACGTTAGATGGTGTTGTAGATTTCATAACCAgttccagagacagacagacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcaggcaTCCTTTCTGATATTGAATTAGAGGAGACACACTTTCTGCTAAGGGGACTATTGTCTGTGGGAGTACAAGATATTGATCTCACAcgccagtgtgtgtgcgtgcgtgcatgctaATTGAGCATTAAATCAAA

Function

NR:

description
PREDICTED: transmembrane protein 196-like isoform X2

GO: NA

KEGG:

id description
K22195 TMEM196; transmembrane protein 196

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953246.1 False 2328 mRNA 0.48 4 53421106 53431824
XM_036953247.1 True 2218 mRNA 0.48 5 53421106 53431824

Neighbor

gene id symbol gene type direction distance location
LOC110496947 LOC106588730 coding downstream 25877 53392686 ~ 53395229 (-)
snx13 LOC106588736 coding downstream 35565 53357729 ~ 53385541 (-)
LOC110496518 LOC106588741 coding downstream 70659 53292413 ~ 53350447 (-)
mturn LOC106588759 coding downstream 226097 53188075 ~ 53195009 (-)
LOC110496514 LOC106588757 coding downstream 233369 53183343 ~ 53187737 (-)
LOC110496853 LOC106588795 coding upstream 85401 53517225 ~ 53530465 (-)
LOC110496522 LOC106588796 coding upstream 100098 53531922 ~ 53537779 (-)
LOC110496523 LOC106588797 coding upstream 107907 53539731 ~ 53597146 (-)
tomm7 NA coding upstream 191894 53621900 ~ 53628443 (-)
fam126a LOC106588800 coding upstream 197042 53628866 ~ 53649839 (-)
G1562624 NA non-coding downstream 26630 53353741 ~ 53394476 (-)
G1562623 NA non-coding downstream 81476 53331774 ~ 53339630 (-)
G1562519 NA non-coding downstream 132583 53279501 ~ 53288523 (-)
G1562522 snrpd1 non-coding downstream 242171 53175708 ~ 53178935 (-)
G1562576 NA non-coding downstream 274186 53141638 ~ 53146920 (-)
G1562701 NA non-coding upstream 58376 53490200 ~ 53491431 (-)
G1562682 NA non-coding upstream 78343 53510167 ~ 53511895 (-)
G1562729 NA non-coding upstream 271268 53703092 ~ 53730527 (-)
LOC110496534 NA non-coding upstream 271941 53703762 ~ 53705633 (-)
G1561279 NA other downstream 773329 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1063796 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1170617 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1237899 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1965821 51381731 ~ 51455285 (-)
G1562762 NA other upstream 166826 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 320582 53752406 ~ 53752683 (-)
G1562828 NA other upstream 442586 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 457885 53887137 ~ 53895002 (-)

Expression


Co-expression Network