itgb8 (LOC106588794)


Basic Information

Item Value
gene id itgb8
gene name LOC106588794
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53497721 ~ 53514974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953249.1
CTGAGTCAGTGCACAGCATAaaaccaagagagagacagatttttTAGGCTGGGCTTTACAATCAGCATATGGTCGTGAGACGCTCAACGCTGAAACATTGCAAAGAAGAAAACGATATAAACAAAGGAGAGGAACGAGAGCGCGCTGAGACACTGGTGTTGTTTGAATGAGCTCAGTGAAGTCTCTCCCGGGACACAGTATGTGACGGGGGGGGGGCACAAAACGTCACTACACCTGCTGCGGGCTGGGATAAATGcacgatagagagagaaagagagatgtctCGTTTTCACTTTCTCAGTCGCACTATAAAGAGCTTGCCAAGGCAACTCCACGTGAATCAGATTTCTGGGAATAATCGTCTGTTTGGATAAGAAGGTTATTGGGCGGAAAGAAAACAAACAACAATGCCCCAACGACGCACCATTCATTCCTGGCGCTGCCTCTTGTTCACGCGGTCGTGCGGTATTTCCCGGTTGATTCCCATTATTGGAGAGTGTCAGTAGTAGGCGGTGACCGGAGCTGCATGCCTGCTGCCGGTGTCTCGAGCTGACCCGATCCCTACAGCCTGCCCCCGGTGTAGATATGACTTCCTGGCTACATAAATACGGTTACCCGACTCTGCATTGCGTGCTGCTCTGCGTGGTATTGGCCGCTAACATCATCGGCGGGAGCTCTCATTCCGGTGAGCGTGTATGTTCGTCTCCTCCTGTCTCATCGTGTTCAGAGTGCCTCCGACGCGGACCACAGTGTGCCTGGTGCTTTGAGGCgGGTTTCCTGGATGGAGCGGAGGTGGGAGAGCGCTGCGACCTGGTGGGGAACCTGGCAAGGAGGGGGTGTGGCCTAGAGTTCATAGAGCATCCAGAGGTCATGGTGGAGGTCAATGCTACGACCAGCAGCACTCAGGTGTCACCGGGAGAGATCACCCTCACACTCAGACCAGGTGCTGAGGCCAGTGTGATAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTATACTACCTGGTGGACGTATCAGCATCCATGCAGGAAAACCTGGACCAGCTGAAGACGGTGGGCGTAGCCTTGTCCCACCGTATGAGAGAACATTCCAGTGATCTGCGTCTGGGGTTCGGCTCCTTCGTTGACAAACCTGTCTCCCCCTACATCAATGTACACCCCTCTAAGATAAATAACCCCTGCAGTGACTATGAGGTGAAGTGTCGCCCAGCCCATGGCTTCCACCACGTTCTTAGTATGACGGCCAACATGTCCGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCAGAGGGAGGGTTAGACGCTATGCTCCAAGCTACTgGTGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGCCTCTGCCATCTGGAGAACAACGTCTATATGGAGAGCACTAccatgGACCATCCCAGTTTAGGCCTGTTGGCTGAGAAGCTTCTAGAGAACCACATCTACTCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGTTGGTCAGGTTGCTACCAGGCTCCAATCTTCTGTTCCAGGCTCCCAAACTTATAGACGTGGTGGTGGATGCatacaagAGGTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCATTCAGCCGTTTCCTGGTCagcgtctctcctctctgtccggAAGGATCTGTATCCCACGACAACCGCAGCTGCTCCAACGTCCAGCCCAACCagacggTCTACTTCAACATCACCATCGGTCTGCACTCCTGTcctgacgatgatgatgatgacgtgGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCATCCATCATCAAGGTTCACTCACGATGTCGCTGTCACTGTGGACCGGACTGGCATTGCCACGACGATACCACACATCAGTCAACGTGTGGTGAGGTCACCCCAGATACAGACCGTAATAATCAAGACATGAACAATcgggacatgcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACccacacgctctcacacacacacaccggacctAGACCCAGAGCACACACCCACACGCCCTCACACACACGGACCGGAGTGGTCACGGCAGTGTCGTGCGGAGGGATCGGGGGTGGACTGTAACGgtcggggagtgtgtgtgtgtgggaagtgtgtgtgtgagaggaacAGTCTAGGAACAGTGTATGGACAGTACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGGACTACTGTGTGGagggcgaggtatgtgtgtgtctggtgaTTGTGTATGTGAAGAGGGCTGGACAGGAGAGAGCTGCAGGTGCCCAGTCTCTACGGCAATCTGCCTGTCCGACAACGGGTTGCTATGCAGCGGGcgtggcaggtgtgtgtgtggcagatgTGTGTGTGACAACCATCAATATTCCGGAGCATTTTGTGAGAGATGTCCCACCTGCCACAGCTCCTGTCAGTCACACTGgAGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAGAGGCTGGGGAGTGCAACCATACCTGCATCCCATTAGTGGGTTACGTCAATGATGTCACAGtcctacTAGGCCAGGTATGGAGACAGTGTGTGTATAAGAAAGACAACTGTTACTATCGCTTCCACACTGCACTTGTCTCAGGAAATACTCTTCTACATTTCAACACACAacctgagtGTGTTTCCAGTAGGCGGTATGTGGGGAccttcctcagtgtgtgtgtgttgacgttCCTCCCTGGCTTGGTGATGCTGGCTGTGCTGGTGCTGCTGCTGCACAGACGATCTTTGCCACAGGGTGGCGCCACTGATCAACAATACAACCCCACTGGCAAGGATCTGTCACACGTCCCAAAGACCAATGAGAAGACGGTATCCTACAGGAGGGACCGCCCCCCGGGCCCTGACCGACCAATGGAGATGCATATCACCGTTCCCAAGATGCCCCTGGGCGAACCCTGGCAGtaaggggtcaggggttagaggtcaacaGTTGAAGTGGGCCAATGCTGACCGGTACAGAAAAGCAGCAACTCTAATGTTATACTGCTTGAGAACCGGCACCTGTGAAATACAGGTACAGTAAAATGACAGTGAGCAGGGCTACAGGAATCTTCTCTCAGTACACTTGCACTGGTTACAGGTTAGGGGAAGGATAGTAAATCATGAAAAACTGGACAGAGTAACACTCCAAACAGGAGTCTTGTTACTGATACTGTAATATTATGTGGCTTTATGGACTGGCAGCCATTGAAAGGTACTGAACATTGATCGATTTATCAATGCTAAATATTTATGCTTTTATTACAGAGAACACTACAAGTTTATTAGTTtacttgatctctctctctctactcaacctgtgtgtcctgcgTTAGCTTGCCACCTAGTGGTCAGTGGTGAAACGACATAACAGAATGGGATGAATGAATAATTGGATgaaggaatgaatgaatgaatgagtgaaTGGTGACCTTGCACCAGCAGTAACGTGTGAATATGTGACACTCCACAAtcattacctttttttttttacctaccGCCAAATCTACTTGATTTCTTTATTCTATGTGCCTGGCATAACTGGAGTTTTGAGAGGACAGGTAGCCTCCAACGGTTGTTAATGTACAGTATCTAGTTTTAATATTTGAAACAAGCATTAATTTAAAATTAGCATACTTgtggagagacagagtagagattTGCACTAGCATCGTTACGTAGCATGATAGGTCGTAGTGTTGTCAGACTACTGAGTGCTAATTGGCTCCTGAACTATTGGGAAGGCTGCTGATTGGCTCCTAAACTACTGGGAAGGCTCCTGATTGGATCCTGAACGTTCCATAATACACTTCTATCTACAACAATTCCAGTAAACAAAACTATGAATAATATTTAATAATGCATTTGTTGCATGTTTTCTTTACATCTGATGTTTGATGTTTACAGCATTCATTAGCTGCTAATTTATTTAGTCCATAACACTAATATCATTATTTATTGTGATttatttcaacaaaaaaaaaatgtttattgtcATTTTTGTATTCTATTTTTAATTAAAGGTACTGACTGCCTACAGGGCTGTAATATTACAGGACTGTATCTCAATGTTAAATGAATCAGTAATTATAAAAATGATCTCTCTAACTGGCAGACTTGGGTCAAATACTTTCAAAAACTGGTATCACATTATTAGAATGGTACCCATTGTCTCACGTCAGAAAGCTTGACAACCTTGTCTGCATAGTTCATGGCCAGTCTGAAGACAATGAAGGGCACCTACtgcacatttggaaagtattcagaccccttgactttttccacattttgttacgttacagccttattctaaaatgtattaaattatttaattttctcatcaatctacacacaataccccatactgacaaa
>XM_036953248.1
TGAGTCAGTGCACAGCATAaaaccaagagagagacagatttttTAGGCTGGGCTTTACAATCAGCATATGGTCGTGAGACGCTCAACGCTGAAACATTGCAAAGAAGAAAACGATATAAACAAAGGAGAGGAACGAGAGCGCGCTGAGACACTGGTGTTGTTTGAATGAGCTCAGTGAAGTCTCTCCCGGGACACAGTATGTGACGGGGGGGGGGCACAAAACGTCACTACACCTGCTGCGGGCTGGGATAAATGcacgatagagagagaaagagagatgtctCGTTTTCACTTTCTCAGTCGCACTATAAAGAGCTTGCCAAGGCAACTCCACGTGAATCAGATTTCTGGGAATAATCGTCTGTTTGGATAAGAAGGTTATTGGGCGGAAAGAAAACAAACAACAATGCCCCAACGACGCACCATTCATTCCTGGCGCTGCCTCTTGTTCACGCGGTCGTGCGGTATTTCCCGGTTGATTCCCATTATTGGAGAGTGTCAGTAGTAGGCGGTGACCGGAGCTGCATGCCTGCTGCCGGTGTCTCGAGCTGACCCGATCCCTACAGCCTGCCCCCGGTGTAGATATGACTTCCTGGCTACATAAATACGGTTACCCGACTCTGCATTGCGTGCTGCTCTGCGTGGTATTGGCCGCTAACATCATCGGCGGGAGCTCTCATTCCGGTGAGCGTGTATGTTCGTCTCCTCCTGTCTCATCGTGTTCAGAGTGCCTCCGACGCGGACCACAGTGTGCCTGGTGCTTTGAGGCgGGTTTCCTGGATGGAGCGGAGGTGGGAGAGCGCTGCGACCTGGTGGGGAACCTGGCAAGGAGGGGGTGTGGCCTAGAGTTCATAGAGCATCCAGAGGTCATGGTGGAGGTCAATGCTACGACCAGCAGCACTCAGGTGTCACCGGGAGAGATCACCCTCACACTCAGACCAGGTGCTGAGGCCAGTGTGATAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTATACTACCTGGTGGACGTATCAGCATCCATGCAGGAAAACCTGGACCAGCTGAAGACGGTGGGCGTAGCCTTGTCCCACCGTATGAGAGAACATTCCAGTGATCTGCGTCTGGGGTTCGGCTCCTTCGTTGACAAACCTGTCTCCCCCTACATCAATGTACACCCCTCTAAGATAAATAACCCCTGCAGTGACTATGAGGTGAAGTGTCGCCCAGCCCATGGCTTCCACCACGTTCTTAGTATGACGGCCAACATGTCCGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCAGAGGGAGGGTTAGACGCTATGCTCCAAGCTACTGTATGTCAGgGTGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGCCTCTGCCATCTGGAGAACAACGTCTATATGGAGAGCACTAccatgGACCATCCCAGTTTAGGCCTGTTGGCTGAGAAGCTTCTAGAGAACCACATCTACTCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGTTGGTCAGGTTGCTACCAGGCTCCAATCTTCTGTTCCAGGCTCCCAAACTTATAGACGTGGTGGTGGATGCatacaagAGGTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCATTCAGCCGTTTCCTGGTCagcgtctctcctctctgtccggAAGGATCTGTATCCCACGACAACCGCAGCTGCTCCAACGTCCAGCCCAACCagacggTCTACTTCAACATCACCATCGGTCTGCACTCCTGTcctgacgatgatgatgatgacgtgGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCATCCATCATCAAGGTTCACTCACGATGTCGCTGTCACTGTGGACCGGACTGGCATTGCCACGACGATACCACACATCAGTCAACGTGTGGTGAGGTCACCCCAGATACAGACCGTAATAATCAAGACATGAACAATcgggacatgcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACccacacgctctcacacacacacaccggacctAGACCCAGAGCACACACCCACACGCCCTCACACACACGGACCGGAGTGGTCACGGCAGTGTCGTGCGGAGGGATCGGGGGTGGACTGTAACGgtcggggagtgtgtgtgtgtgggaagtgtgtgtgtgagaggaacAGTCTAGGAACAGTGTATGGACAGTACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGGACTACTGTGTGGagggcgaggtatgtgtgtgtctggtgaTTGTGTATGTGAAGAGGGCTGGACAGGAGAGAGCTGCAGGTGCCCAGTCTCTACGGCAATCTGCCTGTCCGACAACGGGTTGCTATGCAGCGGGcgtggcaggtgtgtgtgtggcagatgTGTGTGTGACAACCATCAATATTCCGGAGCATTTTGTGAGAGATGTCCCACCTGCCACAGCTCCTGTCAGTCACACTGgAGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAGAGGCTGGGGAGTGCAACCATACCTGCATCCCATTAGTGGGTTACGTCAATGATGTCACAGtcctacTAGGCCAGGTATGGAGACAGTGTGTGTATAAGAAAGACAACTGTTACTATCGCTTCCACACTGCACTTGTCTCAGGAAATACTCTTCTACATTTCAACACACAacctgagtGTGTTTCCAGTAGGCGGTATGTGGGGAccttcctcagtgtgtgtgtgttgacgttCCTCCCTGGCTTGGTGATGCTGGCTGTGCTGGTGCTGCTGCTGCACAGACGATCTTTGCCACAGGGTGGCGCCACTGATCAACAATACAACCCCACTGGCAAGGATCTGTCACACGTCCCAAAGACCAATGAGAAGACGGTATCCTACAGGAGGGACCGCCCCCCGGGCCCTGACCGACCAATGGAGATGCATATCACCGTTCCCAAGATGCCCCTGGGCGAACCCTGGCAGtaaggggtcaggggttagaggtcaacaGTTGAAGTGGGCCAATGCTGACCGGTACAGAAAAGCAGCAACTCTAATGTTATACTGCTTGAGAACCGGCACCTGTGAAATACAGGTACAGTAAAATGACAGTGAGCAGGGCTACAGGAATCTTCTCTCAGTACACTTGCACTGGTTACAGGTTAGGGGAAGGATAGTAAATCATGAAAAACTGGACAGAGTAACACTCCAAACAGGAGTCTTGTTACTGATACTGTAATATTATGTGGCTTTATGGACTGGCAGCCATTGAAAGGTACTGAACATTGATCGATTTATCAATGCTAAATATTTATGCTTTTATTACAGAGAACACTACAAGTTTATTAGTTtacttgatctctctctctctactcaacctgtgtgtcctgcgTTAGCTTGCCACCTAGTGGTCAGTGGTGAAACGACATAACAGAATGGGATGAATGAATAATTGGATgaaggaatgaatgaatgaatgagtgaaTGGTGACCTTGCACCAGCAGTAACGTGTGAATATGTGACACTCCACAAtcattacctttttttttttacctaccGCCAAATCTACTTGATTTCTTTATTCTATGTGCCTGGCATAACTGGAGTTTTGAGAGGACAGGTAGCCTCCAACGGTTGTTAATGTACAGTATCTAGTTTTAATATTTGAAACAAGCATTAATTTAAAATTAGCATACTTgtggagagacagagtagagattTGCACTAGCATCGTTACGTAGCATGATAGGTCGTAGTGTTGTCAGACTACTGAGTGCTAATTGGCTCCTGAACTATTGGGAAGGCTGCTGATTGGCTCCTAAACTACTGGGAAGGCTCCTGATTGGATCCTGAACGTTCCATAATACACTTCTATCTACAACAATTCCAGTAAACAAAACTATGAATAATATTTAATAATGCATTTGTTGCATGTTTTCTTTACATCTGATGTTTGATGTTTACAGCATTCATTAGCTGCTAATTTATTTAGTCCATAACACTAATATCATTATTTATTGTGATttatttcaacaaaaaaaaaatgtttattgtcATTTTTGTATTCTATTTTTAATTAAAGGTACTGACTGCCTACAGGGCTGTAATATTACAGGACTGTATCTCAATGTTAAATGAATCAGTAATTATAAAAATGATCTCTCTAACTGGCAGACTTGGGTCAAATACTTTCAAAAACTGGTATCACATTATTAGAATGGTACCCATTGTCTCACGTCAGAAAGCTTGACAACCTTGTCTGCATAGTTCATGGCCAGTCTGAAGACAATGAAGGGCACCTACtgcacatttggaaagtattcagaccccttgactttttccacattttgttacgttacagccttattctaaaatgtattaaattatttaattttctcatcaatctacacacaataccccatactgacaaa

Function

NR:

description
integrin beta-8-like

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953249.1 False 4629 mRNA 0.49 16 53497721 53514974
XM_036953248.1 True 4637 mRNA 0.49 16 53497722 53514974

Neighbor

gene id symbol gene type direction distance location
LOC110496948 NA coding upstream 91216 53404665 ~ 53406505 (+)
LOC110496519 LOC106588750 coding upstream 190595 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding upstream 209096 53287015 ~ 53288625 (+)
sh3bp5a LOC106588751 coding upstream 222665 53198538 ~ 53275056 (+)
ggcta LOC106588758 coding upstream 314227 53180891 ~ 53183494 (+)
LOC110496949 LOC106588787 coding downstream 103848 53618822 ~ 53621390 (+)
klhl7 klhl7 coding downstream 141252 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 160519 53675493 ~ 53703310 (+)
LOC110514975 LOC106588804 coding downstream 198862 53713836 ~ 53730416 (+)
LOC110519664 LOC106588805 coding downstream 297109 53812083 ~ 53882492 (+)
G1561723 NA non-coding upstream 2007 53495397 ~ 53495714 (+)
G1561593 LOC106588741 non-coding upstream 197751 53292431 ~ 53299970 (+)
G1561562 NA non-coding upstream 361195 53135743 ~ 53136526 (+)
si:ch211-199g17.2 LOC106588746 non-coding upstream 446450 52996763 ~ 53051271 (+)
G1561712 NA non-coding downstream 6490 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 24800 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 38324 53553298 ~ 53553592 (+)
G1561769 NA non-coding downstream 71396 53586370 ~ 53587352 (+)
G1561792 NA non-coding downstream 86317 53601291 ~ 53602252 (+)
G1561544 LOC106588750 other upstream 209256 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 318784 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1055780 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1141886 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1240191 52256636 ~ 52257530 (+)
G1561845 NA other downstream 302190 53817164 ~ 53840871 (+)
G1561856 NA other downstream 357199 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 994784 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1623674 55138648 ~ 55139231 (+)

Expression


Co-expression Network