LOC110496522 (LOC106588796)


Basic Information

Item Value
gene id LOC110496522
gene name LOC106588796
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53531922 ~ 53537779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572476.2
CGGGCTGTTCCATTATGAATCCGGGGGAGAAGGAGAGTAACTCCGAGCAGAAACTCATTGTAATAATGATATTAAAAATCAATTCACTCTCACGGCCGTCGTATAACGACTTCTACATACAGCAAAAGTATTCTGGGCTCACAAAATCAAGTTTGAAAACATATTTGAACGAAATTCAAAACTCGACTGCACACCTGACTTTAGAGACAAGTACATGAACtcgtgtttgtttttttaccatTCATTCTCTGTTGTGTGAACTGCATGTGAACTTTGAGAGAAGGAACATTCGTCTCTCAAACGAGTTAAAATGCCgttatcatcaaagACCCCCAGGGCCCTGTCGGCCATCTTTGAAAGTCCCAGTGACGATGAGGACTTCCTGGGTTTTGCAATGTCAGTGCCTAGTGACAGCGAATCAGACGACAGCAGGGACAGCCTTGCCTCTGAGGACTCTGGGAAGCCGGCCGTGCGTTTCAGGTCAAAGTTTGTGACCGCAGAGTTGTGCGTAGCGGAGGAGAGTGATGAAGACACAGGTTTCTACTCCGAGGGGGAGgagccagagacacacacaaggaGGAGTCTCTGTGTTGCCTTTAGGTTTCCCACCAAAAGACTCTCTGCCAAGAAAGGGGAGGCACCAAGGAAACCCCAGCCAATCACTACCGCCACTCCGACGAGGACAACCAATGAAAAGGAGCATCTGAAAAGGGGTGTGTCTCAGGTGTCCCGTGGGATGGTGACACGGGGTCAGAAACAGCCTCTAAAAAAAGAGGAGGAGGTTGAGTCTCCAGTTCTAAATAAACGAGCCAAGAACATCCAGGAGAACAAGGCCATGTTGGCCAAGCTGTTTGCtgacctgaccaacatggctgaacTCCCCCCCTCGACCATGAAGAAGAGGCGTGTGAGTGAGAAGCCGACCCCTCGAAGACTAGGTGTGCATGAGGGGGGCGAGAGGAGGAACCCATCGCGTGCGGCCAGACCGCCAGAGAAGTTTGGGGTGGAGGAGCGGACTACCTCCCCCTCACATAACAACAAATCTGTGAGGACTGTCTGTGTCAGGAAACTACTGGAGGTGGATGATGAGCTGAGAAGAAgtgggaagaagaggaggacgagcagcgggaagaggaggaagattaCACATGTGAGATCAGTCGATGAGATTACGGAGGAAGAGCTGGACAACGTGGCGGAAGGCGCCAAAGACAAGATACTGGACAAGGACCACggcaGCACTTGTCATCAGTGTAGACAGAAGACTCTGGACACCAAGACGGTGTGTCGTAGCGGAGTATGTTCAGGGGGCAAAGGTCAGTTTTGTGGGCCCTGTTTGAGGAACCGCTACGGAGAGGACGTACGCTCTGCCCTGCTGGATCCAgactGGGAGTGTCCTCTTTGTAGAGGTATCTGTAACTGCAGTCTGTGTCGACGAAGAGAAGGACGTTGTGCAACAGGACAACTCGTCCATTTGGCTCAACACAAGGGCCACAGCAATGTCCAAGATTACCTGGAGAGCATCCAAAAAGATCTTCGAGCCTAGAGACAAGACCAGACAAGCAGACAGCTCCCCTGTTGGTCAGGACAGACAATTACACCCTGGAGGCCCAGAGGGAGAGACCCAGCAGACAGAGGGTGTGTCtcaatctctcctttctcctgaagtTTACACTCTTCACTACTTCCCACAAAGCATTGGATTTGCAGAGGCATGGGCTAAAAGTagtttccaccatatttcttATTATACCAGTAATTTCCTTACAAATCAATGGatggaagtgaacaagtgcacactttgggcaGAAGGAGAGATCATTAGGACGTGgtcatactgacacacagaaTTGTTCTGCTTTAGTACTGCCACAGTTCACTCGAGTCCAGGATTTTGGATCTCTAGATGGTCTAGAACAGTGTTCCTCAATGACTGCCATGTCCCTCTAACACCCTATTTAATCACAGTCATGTTCAGTAGGGAGACAATGTTTTGAAACAGGAGGTAGTACCTGACATTTTCCAGTAAGAACATGTAATTACCATTTATCGTTGCAAAATATTTTGCTACGGTGTACACCACTGAATATGACCCAGGAAAACCATAACTTGTGGATCCCTGCAACTAAAAAGATTGAGCAACACCGGTCTAGATGGATATCTGTGGTTCCAAgactgtttacacaggcagcccaattctgaaatCATATTTTTATGCAACAGCAGTCAGGCAGTGGAGTTGAACTTTTTATTAGACCTTGGATGGGTCAGAGGGTACAGACAACCACTGTTAAATTCAATACCTTTTTAATCTGGGGAATAATGTTTACGCACCGATTTATTATGCTAAATTAGCATAGTTTGAGTTTACACCTATTTTACCTCTGCATCCCTAGTAGTTAGACATGGTTTACTTTTTACTGAAAGGAACAGAACATATTCCCTTGGTTATAGACCATAGCCAATACAATTGGGCCTATGGGAGGTATAGTGTACTGTTTACTACactgttttaatgtttttttttccttctATATGGAGTTAGTTTTAAGACTGCTTCTGAAAGTGGACACTGTATGTTAGTTGAATCTGAAATAAAGAACTGAAGTTCAAATGTTTACTA
>XM_021572477.2
GACTCGGGCTGTTCCATTATGAATCCGGGGGAGAAGGAGAGTAACTCCGAGCAGAAACTCATTGTAATAATGATATTAAAAATCAATTCACTCTCACGGCCGTCGTATAACGACTTCTACATACAGCAAAAGTATTCTGGGCTCACAAAATCAAGTTTGAAAACATATTTGAACGAAATTCAAAACTCGACTGCACACCTGACTTTAGAGACAAGTACATGAACtcgtgtttgtttttttaccatTCATTCTCTGTTGTGTGAACTGCATGTGAACTTTGAGAGAAGGAACATTCGTCTCTCAAACGAGTTAAAATGCCgttatcatcaaagACCCCCAGGGCCCTGTCGGCCATCTTTGAAAGTCCCAGTGACGATGAGGACTTCCTGGGTTTTGCAATGTCAGTGCCTAGTGACAGCGAATCAGACGACAGCAGGGACAGCCTTGCCTCTGAGGACTCTGGGAAGCCGGCCGTGCGTTTCAGGTCAAAGTTTGTGACCGCAGAGTTGTGCGTAGCGGAGGAGAGTGATGAAGACACAGGTTTCTACTCCGAGGGGGAGgagccagagacacacacaaggaGGAGTCTCTGTGTTGCCTTTAGGTTTCCCACCAAAAGACTCTCTGCCAAGAAAGGGGAGGCACCAAGGAAACCCCAGCCAATCACTACCGCCACTCCGACGAGGACAACCAATGAAAAGGAGCATCTGAAAAGGGGTGTGTCTCAGGTGTCCCGTGGGATGGTGACACGGGGTCAGAAACAGCCTCTAAAAAAAGAGGAGGAGGTTGAGTCTCCAGTTCTAAATAAACGAGCCAAGAACATCCAGGAGAACAAGGCCATGTTGGCCAAGCTGTTTGCtgacctgaccaacatggctgaacTCCCCCCCTCGACCATGAAGAGGCGTGTGAGTGAGAAGCCGACCCCTCGAAGACTAGGTGTGCATGAGGGGGGCGAGAGGAGGAACCCATCGCGTGCGGCCAGACCGCCAGAGAAGTTTGGGGTGGAGGAGCGGACTACCTCCCCCTCACATAACAACAAATCTGTGAGGACTGTCTGTGTCAGGAAACTACTGGAGGTGGATGATGAGCTGAGAAGAAgtgggaagaagaggaggacgagcagcgggaagaggaggaagattaCACATGTGAGATCAGTCGATGAGATTACGGAGGAAGAGCTGGACAACGTGGCGGAAGGCGCCAAAGACAAGATACTGGACAAGGACCACggcaGCACTTGTCATCAGTGTAGACAGAAGACTCTGGACACCAAGACGGTGTGTCGTAGCGGAGTATGTTCAGGGGGCAAAGGTCAGTTTTGTGGGCCCTGTTTGAGGAACCGCTACGGAGAGGACGTACGCTCTGCCCTGCTGGATCCAgactGGGAGTGTCCTCTTTGTAGAGGTATCTGTAACTGCAGTCTGTGTCGACGAAGAGAAGGACGTTGTGCAACAGGACAACTCGTCCATTTGGCTCAACACAAGGGCCACAGCAATGTCCAAGATTACCTGGAGAGCATCCAAAAAGATCTTCGAGCCTAGAGACAAGACCAGACAAGCAGACAGCTCCCCTGTTGGTCAGGACAGACAATTACACCCTGGAGGCCCAGAGGGAGAGACCCAGCAGACAGAGGGTGTGTCtcaatctctcctttctcctgaagtTTACACTCTTCACTACTTCCCACAAAGCATTGGATTTGCAGAGGCATGGGCTAAAAGTagtttccaccatatttcttATTATACCAGTAATTTCCTTACAAATCAATGGatggaagtgaacaagtgcacactttgggcaGAAGGAGAGATCATTAGGACGTGgtcatactgacacacagaaTTGTTCTGCTTTAGTACTGCCACAGTTCACTCGAGTCCAGGATTTTGGATCTCTAGATGGTCTAGAACAGTGTTCCTCAATGACTGCCATGTCCCTCTAACACCCTATTTAATCACAGTCATGTTCAGTAGGGAGACAATGTTTTGAAACAGGAGGTAGTACCTGACATTTTCCAGTAAGAACATGTAATTACCATTTATCGTTGCAAAATATTTTGCTACGGTGTACACCACTGAATATGACCCAGGAAAACCATAACTTGTGGATCCCTGCAACTAAAAAGATTGAGCAACACCGGTCTAGATGGATATCTGTGGTTCCAAgactgtttacacaggcagcccaattctgaaatCATATTTTTATGCAACAGCAGTCAGGCAGTGGAGTTGAACTTTTTATTAGACCTTGGATGGGTCAGAGGGTACAGACAACCACTGTTAAATTCAATACCTTTTTAATCTGGGGAATAATGTTTACGCACCGATTTATTATGCTAAATTAGCATAGTTTGAGTTTACACCTATTTTACCTCTGCATCCCTAGTAGTTAGACATGGTTTACTTTTTACTGAAAGGAACAGAACATATTCCCTTGGTTATAGACCATAGCCAATACAATTGGGCCTATGGGAGGTATAGTGTACTGTTTACTACactgttttaatgtttttttttccttctATATGGAGTTAGTTTTAAGACTGCTTCTGAAAGTGGACACTGTATGTTAGTTGAATCTGAAATAAAGAACTGAAGTTCAAATGTTTACTA

Function

NR:

description
cell division cycle-associated 7-like protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572476.2 False 2623 mRNA 0.47 11 53531922 53537775
XM_021572477.2 True 2624 mRNA 0.47 11 53531922 53537779

Neighbor

gene id symbol gene type direction distance location
LOC110496853 LOC106588795 coding downstream 1457 53517225 ~ 53530465 (-)
LOC110496852 LOC106588729 coding downstream 100098 53421106 ~ 53431824 (-)
LOC110496947 LOC106588730 coding downstream 136693 53392686 ~ 53395229 (-)
snx13 LOC106588736 coding downstream 146381 53357729 ~ 53385541 (-)
LOC110496518 LOC106588741 coding downstream 181475 53292413 ~ 53350447 (-)
LOC110496523 LOC106588797 coding upstream 1952 53539731 ~ 53597146 (-)
tomm7 NA coding upstream 85939 53621900 ~ 53628443 (-)
fam126a LOC106588800 coding upstream 91087 53628866 ~ 53649839 (-)
si:ch73-345f18.3 LOC106588788 coding upstream 115194 53652973 ~ 53655476 (-)
aste1b aste1 coding upstream 125768 53663547 ~ 53670502 (-)
G1562682 NA non-coding downstream 20027 53510167 ~ 53511895 (-)
G1562701 NA non-coding downstream 40491 53490200 ~ 53491431 (-)
G1562624 NA non-coding downstream 137446 53353741 ~ 53394476 (-)
G1562623 NA non-coding downstream 192292 53331774 ~ 53339630 (-)
G1562519 NA non-coding downstream 243399 53279501 ~ 53288523 (-)
G1562729 NA non-coding upstream 165313 53703092 ~ 53730527 (-)
LOC110496534 NA non-coding upstream 165986 53703762 ~ 53705633 (-)
G1562730 NA non-coding upstream 196391 53734170 ~ 53743453 (-)
LOC110496535 NA non-coding upstream 200564 53738342 ~ 53741052 (-)
G1561279 NA other downstream 884145 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1174612 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1281433 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1348715 52179320 ~ 52240648 (-)
G1560339 NA other downstream 2076637 51381731 ~ 51455285 (-)
G1562762 NA other upstream 60871 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 214627 53752406 ~ 53752683 (-)
G1562828 NA other upstream 336631 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 351930 53887137 ~ 53895002 (-)

Expression


Co-expression Network