LOC110496949 (LOC106588787)


Basic Information

Item Value
gene id LOC110496949
gene name LOC106588787
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53618822 ~ 53621390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572949.2
tggAAGGAGATGAGGAAACACTTGCAATGTGTAAGAATATAAATGCTTGCGCATGTAGCATCGGTCAGACAAACAAGTAGCCTACCAACTTCAGCATCTCTCAAGAGTCACTGGACACAGCACCGACAAACAATTAACTGGGACATGACTTCTACATACTGTAAGTCGGAGGTCACACTATTCTACCGttctacctggtcaaataaacTGGGTTGTGTTTTGTATTTTATCACTAactcctctcttgctctcctcctTCATTCAGACCTCTCACTCCTCTCCGTGCTCGTGGTGATGGTAGTTAACGGGAGTCCCGTGCCCAGCGCGCCAGGTTGGACCTCTGGAGAGGAGCTCGCGGTAGAATCGTTCTCCGGTGAACCGGGCGCGCCGCCGATATGGGAGAACGTGATCAAGGTGATCAAGCTGCTCGTTCAGGAAGTGATCAACTTCCGAGACCAACAGtttgtggAGGAGTTTCAGAAGCCAGTGGAAGAGATGTCATCATTCATACAGTACCAGGTCCCTTCCAtccccacacacctctccaagacCCCCTGCTCCGCCTCAAACTACAACAAGGAGGCATGTCTGCAGAAGATCAGTCATGGTCTGCAGGTGTACCATGTTCTTCTCCAGCATGTTAAGGCTGAATACCCACAATCCACCCTGCTCCCCTCTGTCATGCACCAGACTACTGTCTTGATAGGCCTGTTCAAAGACAAGATGAAGGCTGCTGAGGTAGTAGAGGACCTGTCTGCCAGTGAGAGGGAGCGTGTGCTGGGTGAGGTGTCTACAGGGATAGAGTGGGAGAGGAAGACCAGCGTTCACGCCATCCTTAGGGAACTACGTCACTTCCTGGTCGACACCAAGACAGCCCTCCGCGCATGGGGAAGAGGGGCGAAGGCTGCCAGTAACCATGACATCACGATGGTGGGCAGAGGTGTGTTAGATCAGGCTTGGAGTAAAAACCTGCACTGATGTCTTATTCTCTGAATCagctgtttatttttatttattgaatgTAATACTTGACGGAACTTCAAAACAaagttatttatatatttattcatgtatttatggttgatgaaaaatgtattgaatttatTTAATCTGATTAATTTATTTGATCTCGAGCAGCTTTGTGCCTCTTGTACCCAACTTTCGAGAAACTTGttataaaaatacatatttatatattttttatagcaAATAGTGTTATTTATTTTCACACAAATGGACTCAATGTATTTTTCTAATTATGACATGTTGGTGGATTTCAAGCACAGACTTAAATTTATCTCTAAGTGCCTTTACAGTACATTAGTGACTACATTGATTGTGACTACTACTAGTTTGATCGTTGTAGCCTTCAATTGTCCAATTAACAACCAACCATATTAGCAAacttatttcatttcaaacttaACATTTCTCTATTATAGGTTACTTATCGTAATGAAcgatatcagcaaaatgcctgcgaTAATTGATCAGTATGGTCGGTGTCGATAATTGTTAGTTCATCGTCCCAGCTCTAACTGTGACAAatgttttggatataaaaatgaaTAATAAATGGTATCTGAGAGAATAGAGAAATGTGTTGCTCATATGTTGCTCACTAAACATTGTTTCAACATGATGGTTATTTTCACATGTGGTcatcacaaaaacaaaaaaaatctatttccACTTATCGGTAGGTGTCATTCTGTCAGCAAGACGCATACATTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006953 acute-phase response biological_process
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005138 interleukin-6 receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572949.2 True 1735 mRNA 0.42 4 53618822 53621390

Neighbor

gene id symbol gene type direction distance location
itgb8 LOC106588794 coding upstream 103848 53497721 ~ 53514974 (+)
LOC110496948 NA coding upstream 212317 53404665 ~ 53406505 (+)
LOC110496519 LOC106588750 coding upstream 311696 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding upstream 330197 53287015 ~ 53288625 (+)
sh3bp5a LOC106588751 coding upstream 343766 53198538 ~ 53275056 (+)
klhl7 klhl7 coding downstream 34836 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 54103 53675493 ~ 53703310 (+)
LOC110514975 LOC106588804 coding downstream 92446 53713836 ~ 53730416 (+)
LOC110519664 LOC106588805 coding downstream 190693 53812083 ~ 53882492 (+)
dync1li1 LOC106588808 coding downstream 294902 53916292 ~ 53928304 (+)
G1561792 NA non-coding upstream 16570 53601291 ~ 53602252 (+)
G1561769 NA non-coding upstream 31470 53586370 ~ 53587352 (+)
G1561745 LOC106588797 non-coding upstream 65230 53553298 ~ 53553592 (+)
G1561739 NA non-coding upstream 77049 53539774 ~ 53541773 (+)
G1561712 NA non-coding upstream 94475 53521464 ~ 53524347 (+)
G1561788 NA non-coding downstream 21834 53643224 ~ 53649838 (+)
G1561816 LOC106588788 non-coding downstream 32832 53654222 ~ 53655575 (+)
G1561834 NA non-coding downstream 99915 53721305 ~ 53721808 (+)
G1561837 NA non-coding downstream 110499 53731889 ~ 53732113 (+)
G1561544 LOC106588750 other upstream 330357 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 439885 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1176881 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1262987 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1361292 52256636 ~ 52257530 (+)
G1561845 NA other downstream 195774 53817164 ~ 53840871 (+)
G1561856 NA other downstream 250783 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 888368 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1517258 55138648 ~ 55139231 (+)

Expression


Co-expression Network