LOC110496534


Basic Information

Item Value
gene id LOC110496534
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53703762 ~ 53705633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469563.2
TGGAAACTCGCAGAGCTCTGAGTTTAGAGCAATGATTTTCCGACTCGAAgatcactgacgtgatcttttttttttaaagttcccAGTTGTTGGAACGCGGCATTAAGGCGTTTCCGTGTGAATGTCGTCGCGATGTAGGTGTTTTCCAGAGCGATCATTAACGCAGAACACACACCTTTGGGCTCTTGAAGGGACATATTCATTATCTCAGACAAGATGGCTTTGGTTATTCAAGGATTGGCTATCTGGGGCTTAAACATCGGTCTGCTGGCAGTATCAACTAAAACTCTCATCGTTATTGGAATTTTCGCTGTTGTAGGAACTGCAACATACTACCTTGCCAAATCGCTTTATGAGAAACAGAAGGCGGCTTAAACCTCAGCAACATGACTAACGACTggagaggagccagagagaggtTGATTAACTCGACGACTTACTGTCTCTCTTTACTGCTTTGTTCATTACATGGGTTTTTACAATGAGTTGTAAAGGGAAATTGTCTAtatgctcttgagcaaggcactaatCCAGTGACTTACAAGAGCATTTAGGGtcaagagcttctgctaaatgtcTAAAATATAAATATGACTTCAATTTCAGTGCACATGTCTGCCCACAATGGATAGAGTGGACCAATGAATCCAGCTGTTTATTAGATgaacaaaaaaaatctgtatCACCTGTTCATATTGTCCTTTTCAATTGTTTCCCGTGTCTATCAAGACATTTAAACAACCTAAAAGTTAATTGTAATGTGTGGCAATTAAATGTATTCATCCCTCA
>TU1787981
TCGCGATGTAGGTGTTTTCCAGAGCGATCATTAACGCAGAACACACACCTTTGGGCTCTTGAAGGGACATATTCATTATCTCAGACAAGATGGCTTTGGTTATTCAAGGATTGGCTATCTGGGGCTTAAACATCGGTCTGCTGGCAGTATCAACTAAAACTCTCATCGTTATTGGAATTTTCGCTGTTGTAGGAACTGCAACATACTACCTTGCCAAATCGCTTTATGAGAAACAGAAGGCGGCTTAAACCTCAGCAACATGACTAACGACTggagaggagccagagagaggtTGATTAACTCGACGACTTACTGTCTCTCTTTACTGCTTTGTTCATTACATGGGTTTTTACAATGAGTTGTAAAGGGAAATTGTCTAtatgctcttgagcaaggcactaatCCAGTGACTTACAAGAGCATTTAGGGtcaagagcttctgctaaatgtcTAAAATATAAATATGACTTCAATTTCAGTGCACATGTCTGCCCACAATGGATAGAGTGGACCAATGAATCCAGCTGTTTATTAGATgaacaaaaaaaatctgtatCACCTGTTCATATTGTCCTTTTCAATTGTTTCCCGTGTCTATCAAGACATTTAAACAACCTAAAAGTTAATTGTAATGTGTGGCAATTAAATGTATTCATCCC
>TU1787982
GATTTTCCGACTCGAAgatcactgacgtgatcttttttttttaaagttcccAGTTGTTGGAACGCGGCATTAAGGCGTTTCCGTGTGAATGTCGTCGCGATGTAGGTGTTTTCCAGAGCGATCATTAACGCAGAACACACACCTTTGGGCTCTTGAAGGGACATATTCATTATCTCAGACAAGATGGCTTTGGTTATTCAAGGATTGGCTATCTGGGGCTTAAACATCGGTCTGCTGGCAGTATCAACTAAAACTCTCATCGTTATTGGAATTTTCGCTGTTGTAGGAACTGCAACATACTACCTTGCCAAATCGCTTTATGAGAAACAGAAGGCGGCTTAAACCTCAGCAACATGACTAACGACTggagaggagccagagagaggtTGATTAACTCGACGACTTACTGTCTCTCTTTACTGCTTTGTTCATTACATGGGTTTTTACAATGAGTTGTAAAGGGAAATTGTCTAtatgctcttgagcaaggcactaatCCAGTGACTTACAAGAGCATTTAGGGtcaagagcttctgctaaatgtcTAAAATATAAATATGACTTCAATTTCAGTGCACATGTCTGCCCACAATGGATAGAGTGGACCAATGAATCCAGCTGTTTATTAGATgaacaaaaaaaatctgtatCACCTGTTCATATTGTCCTTTTCAATTGTTTCCCGTGTCTATCAAGACATTTAAACAACCTAAAAGTTAATTGTAATGTGTGGCAATTAAATGTATTCATCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469563.2 False 789 mRNA 0.40 3 53703762 53705633
TU1787981 False 659 lncRNA 0.39 3 53703765 53705506
TU1787982 True 753 lncRNA 0.40 3 53703765 53705600

Neighbor

gene id symbol gene type direction distance location
aste1b aste1 coding downstream 33260 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 48286 53652973 ~ 53655476 (-)
fam126a LOC106588800 coding downstream 53923 53628866 ~ 53649839 (-)
tomm7 NA coding downstream 75319 53621900 ~ 53628443 (-)
LOC110496523 LOC106588797 coding downstream 106616 53539731 ~ 53597146 (-)
LOC110496535 NA coding upstream 32709 53738342 ~ 53741052 (-)
LOC118941188 NA coding upstream 38754 53744387 ~ 53747035 (-)
mrpl3 mrpl3 coding upstream 181504 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 196615 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 343231 54048864 ~ 54244155 (-)
G1562682 NA non-coding downstream 191867 53510167 ~ 53511895 (-)
G1562701 NA non-coding downstream 212331 53490200 ~ 53491431 (-)
G1562624 NA non-coding downstream 309286 53353741 ~ 53394476 (-)
G1562623 NA non-coding downstream 364132 53331774 ~ 53339630 (-)
G1562730 NA non-coding upstream 28537 53734170 ~ 53743453 (-)
G1562811 NA non-coding upstream 41963 53747596 ~ 53747867 (-)
G1562815 NA non-coding upstream 46202 53751835 ~ 53752081 (-)
G1562762 NA other downstream 101068 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1055985 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1346452 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1453273 52249354 ~ 52250489 (-)
G1562816 LOC100136012 other upstream 46773 53752406 ~ 53752683 (-)
G1562828 NA other upstream 168777 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 933234 54636849 ~ 54652932 (-)
G1563253 NA other upstream 954993 54660626 ~ 54665643 (-)

Expression


Co-expression Network