LOC110514975 (LOC106588804)


Basic Information

Item Value
gene id LOC110514975
gene name LOC106588804
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53713836 ~ 53730416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951071.1
atgaagctggtgacGGATGTGTCTCAGTGCTTCCTGGACCTGCGCCCAGGAGGCGGGCTTTGCCACATCCTTGGCACTGCATACAAGTTCAAGACTGATCAGGGCTGGAGAAGGTTTGACCTACAGAACTCCTCCAGGACGGACCGAAACGTAGAGATGTTTACTACTCTGGAGAAGACCCTGGTCCAGAATAGCTGTCTGTCGAGGCCCGTCGTGTATGTGGACCAGGAGGTGGATCAGAACCTGAACAGCAGACTGGCTGACATCATCACCAAACaccagGGTTCGTTGACTGAGGACAGAACCCAAGCCTCTCACCACATCTACCCCTGTCCAGCTGTCACAGACCaagATTGGGAGTGGGTGCGCCCTGTTATGCGGAAGGACAACTATGTGTTGGTGCACTGGGGCAGGCACCctgacagGCCTGACCGTAAGTTTACTCCAGTGAAGAAGAGAAGacgctccccctctcctccctcttccgatggcaaaaagaaaggaggaaagAAGAGTGGTGGGTTTAAGAGGCGTGGGccaaaggaggaagaggaagacgtAAAGGAGGATCTGACTAAAGATATGGAGGATCCAACACCTGTCCCTAATATGGAAGAAATTATACTGCCTAAGAATgtgAACCCAAAGAAGGACAGTGAGAACACTCCTGTCAAAGGAGGGATGATGACCGACCTggATGAAATTGAGGACGACTCTCTGCTTCCTGGTGGAAGGgaggatgaggagggcagagaggggcTGCGTCTGTCAGATGGAGAAGACAACATCACAGAACAAACTCACCACATCATCGTCCCGTCCTACACCGCCTGGTTCAACTATAACTGTATTCACCAGATCGAGAAACGAGCTCTTCCAGAGTTCTTTAACGGACAGAACAAGTCCAAATCTCCAGAGATataccTGGCATATCGTAACTTCATGATTGACTCGTACCGGCTGAACCCCCAGGAGTACCTCAGCTCCACCTCCTGCAGACGGAACCTGACAGGAGATGTCTGCGCTGTCATGAGGGTCCATGCGTTGTTGGAGCAGTGGGGGTTAGTGAACTACCAGGTGGATGCAGAAAGCAGACCTCTCCCTATGGGACCCTCTCCCACCCCTCACTTCAACACACTGGCTGATACACCCTCAGGACTGGCCCCGCTGCAGCACAGACcactacagGTGTCGTCCTCCCAGCAGATGTTGTTCTTCCCTGAGAGAAGTGTAGAGAAGCCCTCAGACTCTCAGAACTTTGGCCTCAGAACAGACCTGTATGCCAGGAAACACCCCAAGAGTAAAGGAGCCAGTTCAGGGAGGGATTGGACAGAACAGGAGACCCTCCTACTGTTGGAGgCGTTAGAGGTCTATAGAGACGACTGGAACAAGGTGTCAGAACACGTGGGGTCTCGTACCCAGGACGAGTGCATCCTCCACTTCCTGCGCCTGCCAATAGAAGACCCTTATCTGGAGGACTCCGCCTCCTCTCTTGGCCCATTGGCCTACCAGCCCGttcctttcagccaatcagagaaTCCGGTGATGAGCACCGTGGCGTTCTTGGCGTCCGTGGTTGATCCCCGAGTTGCCTCCGCCGCCGCCAAGGCTGCTTTGGaGGAGTTTTGTCGTGTGCGTGAGGAAGCTGACAAGGTTCTGGAGTTCCCTGCACTCAATGAGGCTGAGAAGGCAGATGTGATGGATGGTGAGAAGATGGAGACTGACTCTGGCTCCCAGCAGTCTCTGCAGgcggATAGACAGACTGTTCTAGAGCCcagtggaggagagaggtcagTGGAGGGAGAACGAGTTAAGAGAGAGAATGCTGAAATGACAGTCACAGAGGAAAGAGACTGCGATAGCGGAGGGAACCacgagacagACCGAGGGGAGAAGGATGAGATTGCTGGACGatggagggaagtagagcaggATGAAGGGAGGAGACTAGCAGAGCTGGAGTTGGTAGATGGGACCGTTACCACGGCAGCAGCTGCTGCTCTCGGTGCCGCCGCTACTAAGGCCAAGcacctagcagcagtagaggagaggaagatcaAGTCTCTGGTGGCTCTGTTGGTGGAGACTCAGATGAAGAAGCTTGAGATCAAACTGAGACACTTTGAGGAGCTGGAGACCATCATGGACCGAGAGAAAGAGGCTtTGGAGCAACAGCGTCAGCAGCTGTTGTCAGAGCGACAGAGTTTCCACTCTGAGCAGCTGAAACATGCAGAGATGAAGATTCTACAGCAGAGAGAGCAGCAAGCACCATACACTCcacaacaacacacagGCCAGTCCATGCCCAGCCAGATGACGTCTACTGGGGGAAACCCTCTCACCATGGCCCCCCGACACCCTGGAGCTCCCAACGGCATGTACCCACCACCACAGCCTGATGGGATAGCTCCGACCCAGCCTGGTCCTCCAAGCACAGCCATACACAGCCGGGGAGCAGAAACATGAGACCACACCTTGACCCCAGTCACCTTATGAatacacacagtacatattttgGATCCACAGTAAGAAACAGTCAAGGAATCTAATCTTCACATTGGACAGGTCCTCATGTGACTGTCATTTTGATGTCATTCAACCATTGTTACACACACTTGCTGTATGCTTTATTGACCAGTGCTGAAGAGTATAAGCAAATCATTGTGTTTTATATGAAACTATC
>TU1786840
GGAGGATCTGACTAAAGATATGGAGGATCCAACACCTGTCCCTAATATGGAAGAAATTATACTGCCTAAGAATgtgAACCCAAAGAAGGACAGTGAGAACACTCCTGTCAAAGGAGGGATGATGACCGACCTggATGAAATTGAGGACGACTCTCTGCTTCCTGGTGGAAGGgaggatgaggagggcagagaggggcTGCGTCTGTCAGATGGAGAAGACAACATCACAGAACAAACTCACCACATCATCGTCCCGTCCTACACCGCCTGGTTCAACTATAACTGTATTCACCAGATCGAGAAACGAGCTCTTCCAGAGTTCTTTAACGGACAGAACAAGTCCAAATCTCCAGAGATataccTGGCATATCGTAACTTCATGATTGACTCGTACCGGCTGAACCCCCAGGAGTACCTCAGCTCCACCTCCTGCAGACGGA
>TU1786837
CGTCCTCCCAGCAGATGTTGTTCTTCCCTGAGAGAAGTGTAGAGAAGCCCTCAGACTCTCAGAACTTTGGCCTCAGAACAGACCTGTATGCCAGGAAACACCCCAAGAGTAAAGGAGCCAGTTCAGGGAGGGATTGGACAGAACAGGAGACCCTCCTACTGTTGGAGgCGTTAGAGGTCTATAGAGACGACTGGAACAAGGTGTCAGAACACGTGGGGTCTCGTACCCAGGACGAGTGCATCCTCCACTTCCTGCGCCTGCCAATAGAAGACCCTTATCTGGAGGACTCCGCCTCCTCTCTTGGCCCATTGGCCTACCAGCCCGttcctttcagccaatcagagaaTCCGGTGATGAGCACCGTGGCGTTCTTGGCGTCCGTGGTTGATCCCCGAGTTGCCTCCGCCGCCGCCAAGGCTGCTTTGGaGGAGTTTTGTCGTGTGCGTGAGGAAGCTGACAAGGTTCTGGAGTTCCCTGCACTCAATGAGGCTGAGAAGGCAGATGTGATGGATGGTGAGAAGATGGAGACTGACTCTGGCTCCCA
>TU1786836
tggctttgtcgtgccctcttcacgactgtcttggtgtgtttggacttatttacataagACCCACCACCACAGCCTGATGGGATAGCTCCGACCCAGCCTGGTCCTCCAAGCACAGCCATACACAGCCGGGGAGCAGAAACATGAGACCACACCTTGACCCCAGTCACCTTATGAatacacacagtacatattttgGATCCACAGTAAGAAACAGTCAAGGAATCTAATCTTCACATTGGACAGGTCCTCATGTGACTGTCATTTTGATGTCATTCAACCATTGTTACACACACTTGCTGTATGCTTTATTGACCAGTGCTGAAGAGTATAAGCAAATCATTGTGTT

Function

NR:

description
SWI/SNF complex subunit SMARCC1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951071.1 False 2683 mRNA 0.53 24 53713836 53730416
TU1786840 False 440 TUCP 0.49 6 53718369 53719476
TU1786837 False 544 TUCP 0.56 4 53720318 53724664
TU1786836 True 346 lncRNA 0.46 2 53729327 53730401

Neighbor

gene id symbol gene type direction distance location
LOC110496530 LOC106588804 coding upstream 10526 53675493 ~ 53703310 (+)
klhl7 klhl7 coding upstream 50283 53656226 ~ 53663553 (+)
LOC110496949 LOC106588787 coding upstream 92446 53618822 ~ 53621390 (+)
itgb8 LOC106588794 coding upstream 198862 53497721 ~ 53514974 (+)
LOC110496948 NA coding upstream 307331 53404665 ~ 53406505 (+)
LOC110519664 LOC106588805 coding downstream 81667 53812083 ~ 53882492 (+)
dync1li1 LOC106588808 coding downstream 185876 53916292 ~ 53928304 (+)
LOC110496857 LOC106588809 coding downstream 253221 53983637 ~ 54008038 (+)
gmpr gmpr coding downstream 291866 54022282 ~ 54036714 (+)
LOC118940998 NA coding downstream 524477 54254893 ~ 54258383 (+)
G1561816 LOC106588788 non-coding upstream 58261 53654222 ~ 53655575 (+)
G1561788 NA non-coding upstream 63998 53643224 ~ 53649838 (+)
G1561792 NA non-coding upstream 111584 53601291 ~ 53602252 (+)
G1561769 NA non-coding upstream 126484 53586370 ~ 53587352 (+)
G1561745 LOC106588797 non-coding upstream 160244 53553298 ~ 53553592 (+)
G1561837 NA non-coding downstream 1473 53731889 ~ 53732113 (+)
G1561838 NA non-coding downstream 1717 53732133 ~ 53732389 (+)
G1561839 LOC105030512 non-coding downstream 2181 53732597 ~ 53732985 (+)
G1561840 NA non-coding downstream 2638 53733054 ~ 53733450 (+)
G1561847 NA non-coding downstream 5623 53736039 ~ 53744227 (+)
G1561544 LOC106588750 other upstream 425371 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 534899 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1271895 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1358001 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1456306 52256636 ~ 52257530 (+)
G1561845 NA other downstream 86748 53817164 ~ 53840871 (+)
G1561856 NA other downstream 141757 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 779342 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1408232 55138648 ~ 55139231 (+)
G1564470 NA other downstream 2177834 55908085 ~ 55908934 (+)
G1561834 NA non-coding upstream 7519 53721305 ~ 53721808 (+)
LOC110514975 LOC106588804 other upstream 4663 53713836 ~ 53730416 (+)

Expression


Co-expression Network