LOC110496535


Basic Information

Item Value
gene id LOC110496535
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53738342 ~ 53741052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469564.2
ggggaggagactgaggTTCGAGAGAAATGAAAGTAAAACTATGACCCTTTCTCAATTGTATACTCCTCGAGtcatctctcctgtctcctcgtctccttctccaAACCCATATGAGGAGAAAGTCAGAAGGGAGAGAGACCTATAACTtactcatccaatgggttttgagaaggagacgatgagtggggagagaggacgcgaggagtatgcaattgagcaTCTCCTTATCACTAGGGTGCGGCAAGAGACGGGATGGGATAGACGGTAAACAACTTTTGTCAAATTGAAGTCGAACGATTTGATCCCCAGTCATCTCTAGCCTACTCATCAGGGGAGTCTAACCAACAGTCCAACGAACCAGTTGCATTTGATCTACAATCTTTAAGTCAACTATGGTTTTAACAGCGCACTGGTTCACGTTAGGTGTTGGTCAATATGCCTTTACAATGGGAGCAGCAACAGTCTCCACGCCTGCTCTGTTGGGTCTGGGGGTAATAGCTGCTGTCACAGTTGGCTGCTATTACGTCTACAAAACTGGTCATGAGAAAGAAAAGGGTAACCAGAAGAACGCATGATGTGACCCCGCCCCCTGCTGGAGGATCCAGACATCACAGCAGAACTCCACAACGCTAGATAATCATAGTTTGTGTGTTTCAAGGTGTTGTTGTGTTGAGAACATGGAACTGTGTTAAAAATTAAATATGCAGttgcattttcacatgtga
>TU1787988
CTCCTCGAGtcatctctcctgtctcctcgtctccttctccaAACCCATATGAGGAGAAAGTCAGAAGGGAGAGAGACCTATAACTtactcatccaatgggttttgagaaggagacgatgagtggggagagaggacgcgaggagtatgcaattgagcaTCTCCTTATCACTAGGGTGCGGCAAGAGACGGGATGGGATAGACGGTAAACAACTTTTGTCAAATTGAAGTCGAACGATTTGATCCCCAGTCATCTCTAGCCTACTCATCAGGGGAGTCTAACCAACAGTCCAACGAACCAGTTGCATTTGATCTACAATCTTTAAGTCAACTATGGTTTTAACAGCGCACTGGTTCACGTTAGGTGTTGGTCAATATGCCTTTACAATGGGAGCAGCAACAGTCTCCACGCCTGCTCTGTTGGGTCTGGGGGTAATAGCTGCTGTCACAGTTGGCTGCTATTACGTCTACAAAACTGGTCATGAGAAAGAAAAGGGTAACCAGAAGAACGCATGATGTGACCCCGCCCCCTGCTGGAGGATCCAGACATCACAGCAGAACTCCACAACGCTAGATAATCATAGTTTGTGTGTTTCAAGGTGTTGTTGTGTTGAGAACATGGAACTGTGTTAAAAATTAAATATGCAGttgcattttcacatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469564.2 False 725 mRNA 0.46 3 53738342 53741052
TU1787988 True 662 lncRNA 0.46 3 53738343 53740990

Neighbor

gene id symbol gene type direction distance location
LOC110496534 NA coding downstream 32709 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 67840 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 82866 53652973 ~ 53655476 (-)
fam126a LOC106588800 coding downstream 88503 53628866 ~ 53649839 (-)
tomm7 NA coding downstream 109899 53621900 ~ 53628443 (-)
LOC118941188 NA coding upstream 3335 53744387 ~ 53747035 (-)
mrpl3 mrpl3 coding upstream 146085 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 161196 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 307812 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 539492 54280544 ~ 54286577 (-)
G1562729 NA non-coding downstream 7815 53703092 ~ 53730527 (-)
G1562682 NA non-coding downstream 226447 53510167 ~ 53511895 (-)
G1562701 NA non-coding downstream 246911 53490200 ~ 53491431 (-)
G1562811 NA non-coding upstream 6544 53747596 ~ 53747867 (-)
G1562815 NA non-coding upstream 10783 53751835 ~ 53752081 (-)
G1562817 NA non-coding upstream 13477 53754529 ~ 53782777 (-)
G1562835 NA non-coding upstream 32364 53773416 ~ 53793921 (-)
G1562762 NA other downstream 135648 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1090565 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1381032 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1487853 52249354 ~ 52250489 (-)
G1562816 LOC100136012 other upstream 11354 53752406 ~ 53752683 (-)
G1562828 NA other upstream 133358 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 897815 54636849 ~ 54652932 (-)
G1563253 NA other upstream 919574 54660626 ~ 54665643 (-)

Expression


Co-expression Network