LOC118941188


Basic Information

Item Value
gene id LOC118941188
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53744387 ~ 53747035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037512.1
tctcctgtctccttctcCAAACCCATATGAGGAGAAAGTCAGAAGGGAGAGAGACCTATAACTtactcatccaatgggttttgagaaggagacggtgagtggggagagaggacgcgaggagtGTGCAATTGAGCATCTCCTTATCACTAGGGTGCGGCAAGAGACGGGATGGGATAGACGGTAAACAACTTTTGTCAAATTGAAGTCGAACGATTTGATCCCCAGTCATCTCTAGCCTACTCATCAGGGGAGTCTAACCAACAGTCCAACGAACCAGTTGCATTTGATCTACAATCTTTAAGTCAACTATGGTTTTAACAGCGCACTGGTTCACATTAGGTGTTGGTCAATATGCCTTTACAATGGGAGCAGCAACAGTCTCCACGCCTGCTCTGTTGGGTCTGGGGGTAATAGCTGCTGTCACAGTTGGCTGCTATTACGTCTACAAAACTGGTCATGAGAAAGAAAAGGGTAACCAGAAGAACGCATGATGTGACCCCGCCCCCTGCTGGAGGATTCAGACATCACAGCAGAACTCCACAACGCTAGATAATCATAGTTTGTGTGTTTCAAGGTGTTGTTGTGTTGAGAACATGGAACTGTGTTAAAAATTAAATATGCAGttgcattttcacatgtga
>TU1787994
TTCTCGATTGTATACTCCTCGAGtcatctctcctgtctccttctcCAAACCCATATGAGGAGAAAGTCAGAAGGGAGAGAGACCTATAACTtactcatccaatgggttttgagaaggagacggtgagtggggagagaggacgcgaggagtGTGCAATTGAGCATCTCCTTATCACTAGGGTGCGGCAAGAGACGGGATGGGATAGACGGTAAACAACTTTTGTCAAATTGAAGTCGAACGATTTGATCCCCAGTCATCTCTAGCCTACTCATCAGGGGAGTCTAACCAACAGTCCAACGAACCAGTTGCATTTGATCTACAATCTTTAAGTCAACTATGGTTTTAACAGCGCACTGGTTCACATTAGGTGTTGGTCAATATGCCTTTACAATGGGAGCAGCAACAGTCTCCACGCCTGCTCTGTTGGGTCTGGGGGTAATAGCTGCTGTCACAGTTGGCTGCTATTACGTCTACAAAACTGGTCATGAGAAAGAAAAGGGTAACCAGAAGAACGCATGATGTGACCCCGCCCCCTGCTGGAGGATTCAGACATCACAGCAGAACTCCACAACGCTAGATAATCATAGTTTGTGTGTTTCAAGGTGTTGTTGTGTTGAGAACATGGAACTGTGTTAAAAATTAAATATGCAGttgcattttcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037512.1 False 641 mRNA 0.46 3 53744387 53747007
TU1787994 True 664 lncRNA 0.46 3 53744392 53747035

Neighbor

gene id symbol gene type direction distance location
LOC110496535 NA coding downstream 3335 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 38754 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 73885 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 88911 53652973 ~ 53655476 (-)
fam126a LOC106588800 coding downstream 94548 53628866 ~ 53649839 (-)
mrpl3 mrpl3 coding upstream 140130 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 155241 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 301857 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 533537 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 567217 54314224 ~ 54315645 (-)
G1562730 NA non-coding downstream 934 53734170 ~ 53743453 (-)
G1562729 NA non-coding downstream 13860 53703092 ~ 53730527 (-)
tomm7 NA non-coding downstream 115965 53621900 ~ 53628443 (-)
G1562811 NA non-coding upstream 589 53747596 ~ 53747867 (-)
G1562815 NA non-coding upstream 4828 53751835 ~ 53752081 (-)
G1562817 NA non-coding upstream 7522 53754529 ~ 53782777 (-)
G1562835 NA non-coding upstream 26409 53773416 ~ 53793921 (-)
G1562831 NA non-coding upstream 31146 53778153 ~ 53781014 (-)
G1562762 NA other downstream 141693 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1096610 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1387077 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1493898 52249354 ~ 52250489 (-)
G1562816 LOC100136012 other upstream 5399 53752406 ~ 53752683 (-)
G1562828 NA other upstream 127403 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 891860 54636849 ~ 54652932 (-)
G1563253 NA other upstream 913619 54660626 ~ 54665643 (-)

Expression


Co-expression Network