LOC110519664 (LOC106588805)


Basic Information

Item Value
gene id LOC110519664
gene name LOC106588805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53812083 ~ 53882492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953260.1
gaggaacagactaaaccaacagagggaggaacagactaaaccaacagatggtggaagagactaaaccaacagagggggtaacggactaaaccaacagagtgAGGAAGAAACTAAACCAAAAGAGGGGGGaacggactaaaccaacagaggggggaacggactaaaccaacagagggggtaacagactaaaccaacagacagaggaacagacagTGGAGCAGATCAACCCCAGACCACAGACAGAGCAGCCATGTCTCACCGGCAACAGATCTGAACACAGAGAGGGTTTATGCTTGGAttaccactgctacacacacacactgacacatgctcatacacacacacactgacagacacacactgacagacacacacacacacacacacacacacactctgaaggAGTCTGTGCTGCTGAGTAACtgggtctggtgtgtgtgtgtcctggtgcATCGgtgtgtgtaccagtgtgtgtagCGCGGTGTGTGTCGGAGGACGGTGGTATGGCGCGCTGGGAGAGCCGGTCGTGGAGTTGGTCATTAAtgatgtctctcctcctctctctgtctgctcacgGAGACCTCTCATTGACCACCGTCAGCAGGACGGAAGTCCAGCACAGCCAATCATCTTTCTCCGCTTTAGAAAGGGCGGTGCTTATCGGTGATGACTCAGCAGAGCTgattggtttagggttaggactagCGGCTGGACTTCCTCTCAGCGCCATCAAACGCAAACCCTCTCACAGAAGACACTCCCACTTGGACTTCACTGAACAGGACGATCAGCCAATCAGAGAAGAGCTAACTGGCGGGGAATCTCAGGAACGCTCAGATGATATCATCAAGGTGGAGTTCCATAACCCCGACCGCcccttgacccctgacctctcgtctgattctgattggctgacGGCTGTAGTTCAGCCCCTGCAGCAGCGGGCGGGAGACCCCACAGCCTGGACTCTGTCAGATTTCTACGACTACTTGTCCCCCGATGACGAACTCTCCACCATAGACACAACCCTTGACCCTGATCCGACCCTGACCCCTCTGGCAGACATGGAGGATGAAAACCCATCGCTCACTGGCTCCCCTGTCCCCAATGTTACCCCTGACAATGATGACCCCCAGCCACCCTCTCAGTCTCAGCCCCCCTCTCAGTCTcaatccccccctcctcctttccctcctcagGGGTCAGATGGGTGTGGTCTGGGCTTTGTGAGGTCAGAGGTCgggggtgagtgtgtgtctcagtgtgacGCACAGCCTGACTTCTGCTACAACAGAGGAGTTTGTACCATCGCTACCGGAATAGGAGCATTCTGCAGATGTAATGTTCAGGACTATATGTGGAACAAGGGCTCTCGTTGTGATTGGGTGGTGACAGACTTCCAGGTGCTGTGTGTGGTAGTGGGTGTGGCCTCTACGACCCTTATCctactcatcatcatcatcgtcttcTTCGCCAAACGACTCCACCGCCTGAGGATTGAGAACAGGCGACTCCGCAAACGCAGTATATACCGTCCACACAGCGAGATGCAGACTGATGGCTTCTCTGTTTCCACGGCGCAAGATGGTTCCCATGCCAACGTAAGGAAGTTGTGTGactcccccccgcccccccctcaACCCCACGCTCACAATCTGGCTTACTATGACAACATTATCTGTCAGGACGACCCTCAGAAAATGGAGGACCCTGTAAAGTCTCAATTCACTCAAGGGGAGGAGTCTCTGAACATCGCCAACTCTCATTCGCCCAAACATATTAACAACCGCCCTGCCCACTCCTCTGACCACACCCCTAACGCAGACCAGGAGTCTATAAATGTCTATCCTCCTCTGACTCTCAACCCTATATATTTCTAAAGCAGGATGGAGTCACCATTGGTCTACAGTTGCTCCTCCCTAAAGAGGCTAAGCTCCGCCCCGAGGCCAGCCCCCCTCTGCACTACAAC
>XM_036953259.1
aggaacagactaaaccaacagagggaggaacagactaaaccaacagatggtggaagagactaaaccaacagagggggtaacggactaaaccaacagagtgAGGAAGAAACTAAACCAAAAGAGGGGGGaacggactaaaccaacagaggggggaacggactaaaccaacagagggggtaacagactaaaccaacagacagaggaacagacagTGGAGCAGATCAACCCCAGACCACAGACAGAGCAGCCATGTCTCACCGGCAACAGATCTGAACACAGAGAGGGTTTATGCTTGGAttaccactgctacacacacacactgacacatgctcatacacacacacactgacagacacacactgacagacacacacacacacacacacacacacactctgaaggAGTCTGTGCTGCTGAGTAACtgggtctggtgtgtgtgtgtcctggtgcATCGgtgtgtgtaccagtgtgtgtagCGCGGTGTGTGTCGGAGGACGGTGGTATGGCGCGCTGGGAGAGCCGGTCGTGGAGTTGGTCATTAAtgatgtctctcctcctctctctgtctgctcacgGAGACCTCTCATTGACCACCGTCAGCAGGACGGAAGTCCAGCACAGCCAATCATCTTTCTCCGCTTTAGAAAGGGCGGTGCTTATCGGTGATGACTCAGCAGAGCTgattggtttagggttaggactagCGGCTGGACTTCCTCTCAGCGCCATCAAACGCAAACCCTCTCACAGAAGACACTCCCACTTGGACTTCACTGAACAGGACGATCAGCCAATCAGAGAAGAGCTAACTGGCGGGGAATCTCAGGAACGCTCAGATGATATCATCAAGGTGGAGTTCCATAACCCCGACCGCcccttgacccctgacctctcgtctgattctgattggctgacGGCTGTAGTTCAGCCCCTGCAGCAGCGGGCGGGAGACCCCACAGCCTGGACTCTGTCAGATTTCTACGACTACTTGTCCCCCGATGACGAACTCTCCACCATAGACACAACCCTTGACCCTGATCCGACCCTGACCCCTCTGGCAGACATGGAGGATGAAAACCCATCGCTCACTGGCTCCCCTGTCCCCAATGTTACCCCTGACAATGATGACCCCCAGCCACCCTCTCAGTCTCAGCCCCCCTCTCAGTCTcaatccccccctcctcctttccctcctcagGGGTCAGATGGGTGTGGTCTGGGCTTTGTGAGGTCAGAGGTCgggggtgagtgtgtgtctcagtgtgacGCACAGCCTGACTTCTGCTACAACAGAGGAGTTTGTACCATCGCTACCGGAATAGGAGCATTCTGCAGATGTAATGTTCAGGACTATATGTGGAACAAGGGCTCTCGTTGTGATTGGGTGGTGACAGACTTCCAGGTGCTGTGTGTGGTAGTGGGTGTGGCCTCTACGACCCTTATCctactcatcatcatcatcgtcttcTTCGCCAAACGACTCCACCGCCTGAGGATTGAGAACAGGCGACTCCGCAAACGCAGTATATACCGTCCACACAGCGAGATGCAGACTGATGGCTTCTCTGTTTCCACGGCGCAAGATGGTTCCCATGCCAACGTAAGGAAGTTGTGTGactcccccccgcccccccctcaACCCCACGCTCACAATCTGGCTTACTATGACAACATTATCTGTCAGGACGACCCTCAGAAAATGGAGGACCCTGTAAAGTCTCAATTCACTCAAGGGGAGGAGTCTCTGAACATCGCCAACTCTCATTCGCCCAAACATATTAACAACCGCCCTGCCCACTCCTCTGACCACACCCCTAACGCAGACCAGGAGGTAAACAGGGAGGAGGCAAACTCCTCTCCCTCCAACAACATATACTAAATCATTATTATGATTAATGTAATACCACCATGCACATAAGGGGAACCATAGTACTGCATACatctactatactatattattctataCTATAGCTGGGTTCCTGGAGAGGGACTGTTGTGCCCCTTGACTCCACTAGAAGCTAAAAGGACGAAAACACaactatactacagtatactatactgtactgtattatactatactgtactgtactcaatacctTACATTACATGTTacaccactactgaccacatggGGGCGATGCTACTCCTTCCTTGCTACACCGAGCTGCATCACTGTAGCAATTCTGAACTAAACTGTCTCTGGCTGGACAAACTCTCCTCTCCCACAATGTCCTGCTCTAATCTCTGACCTTAGAACTCTGACCCTTTACTGCTGTCCTCCCTTCTCCCACTGTCCGCCTTAAGTCTGAGTCAAAAATAGCATTCCTTTTATTGTGCACCACTTTTGcctagagctctggtcaaaagtagtgcacaatgtagggaatagggtgccatttccgaTCTTTACCCTTCTTTTTGTCTGCATGCATTGCTGTTTTCTACTAAAACAGCTCTTTTTGGAAAATCATTATAAACAAGATTGACCAGAAATACAAGAGAAACAGTTGAGATACTTTGATGTTTGATATGATCCAGTGAATATGTCTAGGTCTCATGTAAAGTTACTGTGTTGTCTGGCTTGCTAACATTGATATATTTATGGTTTCTATTGATGCGGGTTATAACCCTTTGATGAAATTCAAGGGGTTGGTATTTTTGGGGGGAGAACACATCGTTATAGCATCGGAACCAGAGTTGTTGAAATAAAACTTTGTAACTTTAAA
>XM_036953261.1
ggaacagactaaaccaacagagggaggaacagactaaaccaacagatggtggaagagactaaaccaacagagggggtaacggactaaaccaacagagtgAGGAAGAAACTAAACCAAAAGAGGGGGGaacggactaaaccaacagaggggggaacggactaaaccaacagagggggtaacagactaaaccaacagacagaggaacagacagTGGAGCAGATCAACCCCAGACCACAGACAGAGCAGCCATGTCTCACCGGCAACAGATCTGAACACAGAGAGGGTTTATGCTTGGAttaccactgctacacacacacactgacacatgctcatacacacacacactgacagacacacactgacagacacacacacacacacacacacacacactctgaaggAGTCTGTGCTGCTGAGTAACtgggtctggtgtgtgtgtgtcctggtgcATCGgtgtgtgtaccagtgtgtgtagCGCGGTGTGTGTCGGAGGACGGTGGTATGGCGCGCTGGGAGAGCCGGTCGTGGAGTTGGTCATTAAtgatgtctctcctcctctctctgtctgctcacgGAGACCTCTCATTGACCACCGTCAGCAGGACGGAAGTCCAGCACAGCCAATCATCTTTCTCCGCTTTAGAAAGGGCGGTGCTTATCGGTGATGACTCAGCAGAGCTgattggtttagggttaggactagCGGCTGGACTTCCTCTCAGCGCCATCAAACGCAAACCCTCTCACAGAAGACACTCCCACTTGGACTTCACTGAACAGGACGATCAGCCAATCAGAGAAGAGCTAACTGGCGGGGAATCTCAGGAACGCTCAGATGATATCATCAAGGTGGAGTTCCATAACCCCGACCGCcccttgacccctgacctctcgtctgattctgattggctgacGGCTGTAGTTCAGCCCCTGCAGCAGCGGGCGGGAGACCCCACAGCCTGGACTCTGTCAGATTTCTACGACTACTTGTCCCCCGATGACGAACTCTCCACCATAGACACAACCCTTGACCCTGATCCGACCCTGACCCCTCTGGCAGACATGGAGGATGAAAACCCATCGCTCACTGGCTCCCCTGTCCCCAATGTTACCCCTGACAATGATGACCCCCAGCCACCCTCTCAGTCTCAGCCCCCCTCTCAGTCTcaatccccccctcctcctttccctcctcagGGGTCAGATGGGTGTGGTCTGGGCTTTGTGAGGTCAGAGGTCgggggtgagtgtgtgtctcagtgtgacGCACAGCCTGACTTCTGCTACAACAGAGGAGTTTGTACCATCGCTACCGGAATAGGAGCATTCTGCAGATGTAATGTTCAGGACTATATGTGGAACAAGGGCTCTCGTTGTGATTGGGTGGTGACAGACTTCCAGGTGCTGTGTGTGGTAGTGGGTGTGGCCTCTACGACCCTTATCctactcatcatcatcatcgtcttcTTCGCCAAACGACTCCACCGCCTGAGGATTGAGAACAGGCGACTCCGCAAACGCAGTATATACCGTCCACACAGCGAGATGCAGACTGATGGCTTCTCTGTTTCCACGGCGCAAGATGGTTCCCATGCCAACAGAGCGAGAAGCAGCTGCATCTGGGAGTATAAGCCTAGACACCCTTACTGTCAGGACGACCCTCAGAAAATGGAGGACCCTGTAAAGTCTCAATTCACTCAAGGGGAGGAGTCTCTGAACATCGCCAACTCTCATTCGCCCAAACATATTAACAACCGCCCTGCCCACTCCTCTGACCACACCCCTAACGCAGACCAGGAGGTAAACAGGGAGGAGGCAAACTCCTCTCCCTCCAACAACATATACTAAATCATTATTATGATTAATGTAATACCACCATGCACATAAGGGGAACCATAGTACTGCATACatctactatactatattattctataCTATAGCTGGGTTCCTGGAGAGGGACTGTTGTGCCCCTTGACTCCACTAGAAGCTAAAAGGACGAAAACACaactatactacagtatactatactgtactgtattatactatactgtactgtactcaatacctTACATTACATGTTacaccactactgaccacatggGGGCGATGCTACTCCTTCCTTGCTACACCGAGCTGCATCACTGTAGCAATTCTGAACTAAACTGTCTCTGGCTGGACAAACTCTCCTCTCCCACAATGTCCTGCTCTAATCTCTGACCTTAGAACTCTGACCCTTTACTGCTGTCCTCCCTTCTCCCACTGTCCGCCTTAAGTCTGAGTCAAAAATAGCATTCCTTTTATTGTGCACCACTTTTGcctagagctctggtcaaaagtagtgcacaatgtagggaatagggtgccatttccgaTCTTTACCCTTCTTTTTGTCTGCATGCATTGCTGTTTTCTACTAAAACAGCTCTTTTTGGAAAATCATTATAAACAAGATTGACCAGAAATACAAGAGAAACAGTTGAGATACTTTGATGTTTGATATGATCCAGTGAATATGTCTAGGTCTCATGTAAAGTTACTGTGTTGTCTGGCTTGCTAACATTGATATATTTATGGTTTCTATTGATGCGGGTTATAACCCTTTGATGAAATTCAAGGGGTTGGTATTTTTGGGGGGAGAACACATCGTTATAGCATCGGAACCAGAGTTGTTGAAATAAAACTTTGTAACTTTAAA
>XM_036953262.1
aacagactaaaccaacagagggaggaacagactaaaccaacagatggtggaagagactaaaccaacagagggggtaacggactaaaccaacagagtgAGGAAGAAACTAAACCAAAAGAGGGGGGaacggactaaaccaacagaggggggaacggactaaaccaacagagggggtaacagactaaaccaacagacagaggaacagacagTGGAGCAGATCAACCCCAGACCACAGACAGAGCAGCCATGTCTCACCGGCAACAGATCTGAACACAGAGAGGGTTTATGCTTGGAttaccactgctacacacacacactgacacatgctcatacacacacacactgacagacacacactgacagacacacacacacacacacacacacacactctgaaggAGTCTGTGCTGCTGAGTAACtgggtctggtgtgtgtgtgtcctggtgcATCGgtgtgtgtaccagtgtgtgtagCGCGGTGTGTGTCGGAGGACGGTGGTATGGCGCGCTGGGAGAGCCGGTCGTGGAGTTGGTCATTAAtgatgtctctcctcctctctctgtctgctcacgGAGACCTCTCATTGACCACCGTCAGCAGGACGGAAGTCCAGCACAGCCAATCATCTTTCTCCGCTTTAGAAAGGGCGGTGCTTATCGGTGATGACTCAGCAGAGCTgattggtttagggttaggactagCGGCTGGACTTCCTCTCAGCGCCATCAAACGCAAACCCTCTCACAGAAGACACTCCCACTTGGACTTCACTGAACAGGACGATCAGCCAATCAGAGAAGAGCTAACTGGCGGGGAATCTCAGGAACGCTCAGATGATATCATCAAGGTGGAGTTCCATAACCCCGACCGCcccttgacccctgacctctcgtctgattctgattggctgacGGCTGTAGTTCAGCCCCTGCAGCAGCGGGCGGGAGACCCCACAGCCTGGACTCTGTCAGATTTCTACGACTACTTGTCCCCCGATGACGAACTCTCCACCATAGACACAACCCTTGACCCTGATCCGACCCTGACCCCTCTGGCAGACATGGAGGATGAAAACCCATCGCTCACTGGCTCCCCTGTCCCCAATGTTACCCCTGACAATGATGACCCCCAGCCACCCTCTCAGTCTCAGCCCCCCTCTCAGTCTcaatccccccctcctcctttccctcctcagGGGTCAGATGGGTGTGGTCTGGGCTTTGTGAGGTCAGAGGTCgggggtgagtgtgtgtctcagtgtgacGCACAGCCTGACTTCTGCTACAACAGAGGAGTTTGTACCATCGCTACCGGAATAGGAGCATTCTGCAGATGTAATGTTCAGGACTATATGTGGAACAAGGGCTCTCGTTGTGATTGGGTGGTGACAGACTTCCAGGTGCTGTGTGTGGTAGTGGGTGTGGCCTCTACGACCCTTATCctactcatcatcatcatcgtcttcTTCGCCAAACGACTCCACCGCCTGAGGATTGAGAACAGGCGACTCCGCAAACGCAGTATATACCGTCCACACAGCGAGATGCAGACTGATGGCTTCTCTGTTTCCACGGCGCAAGATGGTTCCCATGCCAACGACGACCCTCAGAAAATGGAGGACCCTGTAAAGTCTCAATTCACTCAAGGGGAGGAGTCTCTGAACATCGCCAACTCTCATTCGCCCAAACATATTAACAACCGCCCTGCCCACTCCTCTGACCACACCCCTAACGCAGACCAGGAGGTAAACAGGGAGGAGGCAAACTCCTCTCCCTCCAACAACATATACTAAATCATTATTATGATTAATGTAATACCACCATGCACATAAGGGGAACCATAGTACTGCATACatctactatactatattattctataCTATAGCTGGGTTCCTGGAGAGGGACTGTTGTGCCCCTTGACTCCACTAGAAGCTAAAAGGACGAAAACACaactatactacagtatactatactgtactgtattatactatactgtactgtactcaatacctTACATTACATGTTacaccactactgaccacatggGGGCGATGCTACTCCTTCCTTGCTACACCGAGCTGCATCACTGTAGCAATTCTGAACTAAACTGTCTCTGGCTGGACAAACTCTCCTCTCCCACAATGTCCTGCTCTAATCTCTGACCTTAGAACTCTGACCCTTTACTGCTGTCCTCCCTTCTCCCACTGTCCGCCTTAAGTCTGAGTCAAAAATAGCATTCCTTTTATTGTGCACCACTTTTGcctagagctctggtcaaaagtagtgcacaatgtagggaatagggtgccatttccgaTCTTTACCCTTCTTTTTGTCTGCATGCATTGCTGTTTTCTACTAAAACAGCTCTTTTTGGAAAATCATTATAAACAAGATTGACCAGAAATACAAGAGAAACAGTTGAGATACTTTGATGTTTGATATGATCCAGTGAATATGTCTAGGTCTCATGTAAAGTTACTGTGTTGTCTGGCTTGCTAACATTGATATATTTATGGTTTCTATTGATGCGGGTTATAACCCTTTGATGAAATTCAAGGGGTTGGTATTTTTGGGGGGAGAACACATCGTTATAGCATCGGAACCAGAGTTGTTGAAATAAAACTTTGTAACTTTAAA

Function

NR:

description
chondroitin sulfate proteoglycan 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953260.1 False 1969 mRNA 0.54 6 53812083 53882492
XM_036953259.1 False 2726 mRNA 0.49 5 53812084 53880463
XM_036953261.1 False 2695 mRNA 0.49 6 53812085 53880463
XM_036953262.1 True 2639 mRNA 0.49 5 53812087 53880463

Neighbor

gene id symbol gene type direction distance location
LOC110514975 LOC106588804 coding upstream 81667 53713836 ~ 53730416 (+)
LOC110496530 LOC106588804 coding upstream 108773 53675493 ~ 53703310 (+)
klhl7 klhl7 coding upstream 148530 53656226 ~ 53663553 (+)
LOC110496949 LOC106588787 coding upstream 190693 53618822 ~ 53621390 (+)
itgb8 LOC106588794 coding upstream 297109 53497721 ~ 53514974 (+)
dync1li1 LOC106588808 coding downstream 33800 53916292 ~ 53928304 (+)
LOC110496857 LOC106588809 coding downstream 101145 53983637 ~ 54008038 (+)
gmpr gmpr coding downstream 139790 54022282 ~ 54036714 (+)
LOC118940998 NA coding downstream 372401 54254893 ~ 54258383 (+)
LOC110496546 LOC106588814 coding downstream 440325 54322817 ~ 54409921 (+)
G1561851 NA non-coding upstream 8359 53769857 ~ 53803724 (+)
G1561849 NA non-coding upstream 15240 53789231 ~ 53796843 (+)
G1561855 NA non-coding upstream 18226 53772491 ~ 53793857 (+)
G1561857 NA non-coding upstream 19844 53791692 ~ 53792239 (+)
G1561873 NA non-coding upstream 33017 53775205 ~ 53779066 (+)
G1561843 mrpl3 non-coding downstream 4647 53887139 ~ 53894948 (+)
G1561864 NA non-coding downstream 29751 53912243 ~ 53912720 (+)
G1561891 NA non-coding downstream 32656 53915148 ~ 53915563 (+)
G1561943 LOC106588811 non-coding downstream 161580 54044072 ~ 54053417 (+)
G1561544 LOC106588750 other upstream 523618 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 633146 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1370142 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1456248 52355297 ~ 52355835 (+)
LOC110496545 LOC106588816 other downstream 627266 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1256156 55138648 ~ 55139231 (+)
G1564470 NA other downstream 2025758 55908085 ~ 55908934 (+)
LOC110496862 LOC106588838 other downstream 2146446 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other downstream 2168096 56050588 ~ 56051793 (+)

Expression


Co-expression Network