mrpl3 (mrpl3)


Basic Information

Item Value
gene id mrpl3
gene name mrpl3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53887137 ~ 53895002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953264.1
CCGAGCACCTGCGGAATTATTTCCGAGCCGTACCGGAAACCCTCAGGGTGACATTCCACAGCAGAGCACAGGCATGAAGTCATGGGATTGCTGCTAAATTGAAGCATTTTTCCACATTTGAGTTTTTTTCGGTAACGTTAGCCTCGTGAGTGAAATAATTAAAGAATGGCCGCGTGGACCTGCCGACATCTTCTCTACAGAGGAGCACGTGTGCTAGCGGGACGAACCGGAGCGGTAGCAGCAGCGGACAGCTGTCTCTTTCAGAGTGTTCGGACAGTGAAGACCACAACATGGTGGGAGGAGCATCTGACGGAGGATAATAAATCATATATGAGGAAGAGTCTGGGAGAGGAGTATAATCGACAGATAGCTGCTAAGCTCCACCCACTGAAGGATGAGCCCTGGCCCAGACAAGAATGGacaaaggGGCTGGTTGCAGTGAAGTTGGGCATGGCCCCAGTCTGGAccaaaacaggagagagacacgtGGTGACCATGCTGCAGgtgcAGGATTGCCATGTGTTGAATTACCTGTCTAAAGAGGAGTACGATGGACACACTGCTGCCCTAATGGTGGGAGGGAAGAACGCATCGCCCTTCTACAAgacagatgaagagatggagatgttTAGGTTGGCTGGAGTTCCTCCTAAACAGAAAGTCACCACCTTTAAAGTCTCTGACAATGCCATCATCAaaccagGGACTCCTCTCTATGCAGCACACTTCCGTCCAGGACAATATGTAGATGTCACAGCCAAAACtattggTAAGGGTTTTCAGGGGGTGATGAAGCGGTATGGGTTTAAAGGCCAGCCAGCGTCTCATGGCCAGACCAAAACACACCGCAGACCTGGAGCCTCGGGACCTGGAGGGGATCCAGCCAAAGTCTTCAAAGGGAAAAAGATGCCAGGCATGATGGGAAATGTGTTTGACACTGCCCACGGCCTAAAGgtatggAGAGTTAACACCAGGTATAATGTTATCTATGTTCATGGCTCCGTTCCTGGCCACAAGAACTGCTTACTAAAGGTGAGGGACACTAACCTACCGACTTATGTGGAGAAGAACATCAACCCTCCGTTTCCAACGTTTTTCTGTGAGGAGGACGAACAGCTGCCTGAAGACCTGTACGACGAAGACCTGTtcatacacacacagccctcaCTCACACtctaacaaacacacagacatacacacaatcTCATGTCACAGTTGGTCACCATACAATTGATATGTAGGGTTAGCGGtgaaatatttaaatgttttctaGCCACACCCCTCTGTAGTCATTGTGTCTGGGACATTAAACATCCTTTCCTGGAAA
>XM_036953263.1
CGACGAAGCGGAACTACATTTCCGAGCACCTGCGGAATTATTTCCGAGCCGTACCGGAAACCCTCAGGGTGACATTCCACAGCAGAGCACAGGCATGAAGTCATGGGATTGCTGCTAAATTGAAGCATTTTTCCACATTTGAGTTTTTTTCGGTAACGTTAGCCTCGTGAGTGAAATAATTAAAGAATGGCCGCGTGGACCTGCCGACATCTTCTCTACAGAGGAGCACGTGTGCTAGCGGGACGAACCGGAGCGGTAGCAGCAGCGGACAGCTGTCTCTTTCAGAGTGTTCGGACAGTGAAGACCACAACATGGTGGGAGGAGCATCTGACGGAGGATAATAAATCATATATGAGGAAGAGTCTGGGAGAGGAGTATAATCGACAGATAGCTGCTAAGCTCCACCCACTGAAGGATGAGCCCTGGCCCAGACAAGAATGGacaaaggAGAGTCGTCGAGTAGGGCTGGTTGCAGTGAAGTTGGGCATGGCCCCAGTCTGGAccaaaacaggagagagacacgtGGTGACCATGCTGCAGgtgcAGGATTGCCATGTGTTGAATTACCTGTCTAAAGAGGAGTACGATGGACACACTGCTGCCCTAATGGTGGGAGGGAAGAACGCATCGCCCTTCTACAAgacagatgaagagatggagatgttTAGGTTGGCTGGAGTTCCTCCTAAACAGAAAGTCACCACCTTTAAAGTCTCTGACAATGCCATCATCAaaccagGGACTCCTCTCTATGCAGCACACTTCCGTCCAGGACAATATGTAGATGTCACAGCCAAAACtattggTAAGGGTTTTCAGGGGGTGATGAAGCGGTATGGGTTTAAAGGCCAGCCAGCGTCTCATGGCCAGACCAAAACACACCGCAGACCTGGAGCCTCGGGACCTGGAGGGGATCCAGCCAAAGTCTTCAAAGGGAAAAAGATGCCAGGCATGATGGGAAATGTGTTTGACACTGCCCACGGCCTAAAGgtatggAGAGTTAACACCAGGTATAATGTTATCTATGTTCATGGCTCCGTTCCTGGCCACAAGAACTGCTTACTAAAGGTGAGGGACACTAACCTACCGACTTATGTGGAGAAGAACATCAACCCTCCGTTTCCAACGTTTTTCTGTGAGGAGGACGAACAGCTGCCTGAAGACCTGTACGACGAAGACCTGTtcatacacacacagccctcaCTCACACtctaacaaacacacagacatacacacaatcTCATGTCACAGTTGGTCACCATACAATTGATATGTAGGGTTAGCGGtgaaatatttaaatgttttctaGCCACACCCCTCTGTAGTCATTGTGTCTGGGACATTAAACATCCTTTCCTGGAAA
>TU1788095
CCGGAAACCCTCAGGGTGACATTCCACAGCAGAGCACAGGCATGAAGTCATGGGATTGCTGCTAAATTGAAGCATTTTTCCACATTTGAGTTTTTTTCGGTAACGTTAGCCTCGTGAGTGAAATAATTAAAGAATGGCCGCGTGGACCTGCCGACATCTTCTCTACAGAGGAGCACGTGTGCTAGCGGGACGAACCGGAGCGGTAGCAGCAGCGGACAGCTGTCTCTTTCAGAGTGTTCGGACAGTGAAGACCACAACATGGTGGGAGGAGCATCTGACGGAGGATAATAAATCATATATGAGGAAGAGTCTGGGAGAGGAGTATAATCGACAGATAGCTGCTAAGCTCCACCCACTGAAGGATGAGCCCTGGCCCAGACAAGAATGGacaaaggAGAGTCGTCGAGTAGGGCTGGTTGCAGTGAAGTTGGGCATGGCCCCAGTCTGGAccaaaacaggagagagacacgtGGTGACCATGCTGCAGgtgcAGGATTGCCATGTGTTGAATTACCTGTCTAAAGAGGAGTACGATGGACACACTGCTGCCCTAATGGTGGGAGGGAAGAACGCATCGCCCTTCTACAAgacagatgaagagatggagatgttTAGGTTGGCTGGAGTTCCTCCTAAACAGAAAGTCACCACCTTTAAAGTCTCTGACAATGCCATCATCAaaccagGGACTCCTCTCTATGCAGCACACTTCCGTCCAGGACAATATGTAGATGTCACAGCCAAAACtattggTAAGGGTTTTCAGGGGGTGATGAAGCGGTATGGGTTTAaaggctgtctgtctggctccacgccctcgtctctctgtctctctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctggctccacgccctcgtctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctgtctgtctgtctggctccacgccctcgtctctctct

Function

symbol description
mrpl3 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 9. Orthologous to human MRPL3 (mitochondrial ribosomal protein L3).

NR:

description
39S ribosomal protein L3, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953264.1 False 1327 mRNA 0.49 11 53887137 53894981
XM_036953263.1 False 1363 mRNA 0.49 11 53887137 53895002
TU1788095 True 1153 TUCP 0.54 8 53889709 53894949

Neighbor

gene id symbol gene type direction distance location
LOC118941188 NA coding downstream 140130 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 146085 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 181504 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 216635 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 231661 53652973 ~ 53655476 (-)
cpne4b cpne4 coding upstream 7246 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 153862 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 385542 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 419222 54314224 ~ 54315645 (-)
LOC118941189 mrpl53 coding upstream 421122 54316124 ~ 54317624 (-)
G1562854 NA non-coding downstream 2981 53883077 ~ 53884156 (-)
G1562853 NA non-coding downstream 4068 53881366 ~ 53883069 (-)
G1562852 NA non-coding downstream 5954 53880861 ~ 53881183 (-)
G1562829 NA non-coding downstream 16487 53842606 ~ 53870650 (-)
G1562826 NA non-coding downstream 20740 53822929 ~ 53866397 (-)
G1562857 NA non-coding upstream 972 53895974 ~ 53896404 (-)
G1562856 NA non-coding upstream 1778 53896780 ~ 53898361 (-)
G1562859 NA non-coding upstream 10260 53905262 ~ 53905562 (-)
G1562860 NA non-coding upstream 13065 53908067 ~ 53908275 (-)
G1562868 LOC106588808 non-coding upstream 29658 53924660 ~ 53925478 (-)
G1562828 NA other downstream 11545 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 134454 53752406 ~ 53752683 (-)
tomm7 NA other downstream 258715 53621900 ~ 53628443 (-)
G1562762 NA other downstream 284443 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1239360 52644989 ~ 52647777 (-)
LOC110496860 LOC106588819 other upstream 743865 54636849 ~ 54652932 (-)
G1563253 NA other upstream 765624 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2586466 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2833350 56728341 ~ 56737381 (-)
G1566899 NA other upstream 4132509 58027511 ~ 58027790 (-)

Expression


Co-expression Network