cpne4b (cpne4)


Basic Information

Item Value
gene id cpne4b
gene name cpne4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53902248 ~ 53915395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953265.1
gagagagatgttctcTTCATTCATACCGTGAGGACCCTGATGTACTGTATCCCCTGTCTGCGCATGGCTTGAGGTGCAAGGCTCAGTACCTACTGCTTAGCTGACGtacggagagagggaaagaaagagagagagagagaagcgggaTGGGTGCAGAGTGTGTGAGGACGGCGAAGTCACTGTGATTCCGCCCAGCAGTGAAGTTTCCTTCATCTCACTGCTCTGCCCGTCTCTATCTGGTACCTGAGgtcCTGTGTGTGTCCAGCATGAGTAACATCTATGAGTCTGCAGAGGCGACCCTCGGCCTGTGCAACTCTTCCTGTCTGACCAAGGTTGAGCTGAGAGTGGCTTGTCGAGGGATCTCAGACCGAGATGCCCTTTCTAAACCAGACCCCTGTGTTGTACTCAAGATGCAGTCACACGGGCAGTGGTTCGAggtggacCGGACAGAGGTGATCCGTAGCAGTATCAATCCAGTGTTTTCCAAGGTGTTTCTGGTTGACTTCTACTTTGAGGAGGTTCAGCGTCTTCGCTATGAGCTACATGACATCAGCTCCGCTCACAATGGACTCAGAGACACAGACTTCCTCGGAGCTATGGAGTGCACGTTGGGACAAatcGTGTCCCAGAGGAAACTGTCCAAAGCGTTACTTAAACAGGGAAACACTACCAGCAAGTCCTCCATCACAGTAACATCAGAGGAGTTATCGGGTAATGATGACTACGTAGAACTCTCCTTCAGCGCTCGCAAACTAGACGACAAgGATTTCTTCAGTAAATCAGATCCGTTTTTGGAAATCTTCAGAATAAATGATGATGGCAGCGGATCACTAGTTCACAGAACTGAgacGGTGATGAACGACCTCAGCCCGGTGTGGAAGTCATTCAAGGTCTCTCTCAACACACTATGTAGCGGAGACCATGACCGCCAACTAAAGTGCACAGTGTATGATTGGGACTCCAATGGGAAGCACGACTTCATTGGAGAGTTCCAGACCACCTATAAGGAGATACGCACAGACCTGGAAGGGAGACAGaTGCAATGGGACTGTATAAACCCTAAGTACCAGGTGAAGAAGAAAAACTACAGAAACTCTGGTGTCGTCGTCCTCAACCACTGTAAGATCATCAAGATGTATTCTTTCCTAGATTACATCATGGGAGGCTGTCAGATCCAGTTCACAgtGGCCATAGACTTTACAGCATCAAACGGAGACCCCGGAAACAGCTGTTCTCTCCACTACATCCATCCGTACCAGCCCAATGAGTACCTGAAAGCCCTGGTGGCTGTGGGAGAAATATGTCAAGACTACGACAGtgACAAGATGTTTCCAGTTTTTGGGTTTGGAGCTCAGATCCCACCTGACTTTAAGGTGTCACACGATTTTGCCGTGAACTTTGATGAAGACAATCCGGAATGTTCCGGTATCCAGGGTGTGGTGGAAGCCTACCAGGCCTGTCTTCCTAAGATCCAGCTGTACGGACCGACCAACATTGCTCCCATCATACAGAAAGTTGCTTCTTCTGCCTCAGAGGAGATGCACACCATGGAAGCTATGgaGTATTTCATCCTATTGATCCTAACAGATGGAGTGATAACAGACATGGCTGACACTAGAGAAGCTATAGTACATGCTTCCCACCTGCCCATGTCTGTCATCATAGTAGGAGTGGGAAACGCTGACTTCAGTGACATGCAGATGCTGGATGGAGACGATGGAATACTCAGGTCCCCAAAAGGAGAACCTGTTCTCAGAGACATTGTCCAGTTTGTTCCCTTCAAAGACTTCAAACACgCGTCCCCGGCTGCGCTAGCTAAGAGTGTGCTAGCAGAGGTGCCCAATCAGGTGGTGGATTACTACAATGCCAAAGGAATCCATCCCAAATGTCTGTCTGACTACGACGAATCTACCAGACCCTTCAGCCCCtgaccacacacatatacacgtattcatcacacacacattaaacacacacacacattcacatgttATAAACAAAAACTAATACATactcacccatac

Function

symbol description
cpne4 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Located in extracellular exosome.

NR:

description
PREDICTED: copine-4 isoform X1

GO: NA

KEGG:

id description
K24525 CPNE4_6_7; copine 4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953265.1 True 2024 mRNA 0.49 18 53902248 53915395

Neighbor

gene id symbol gene type direction distance location
mrpl3 mrpl3 coding downstream 7246 53887137 ~ 53895002 (-)
LOC118941188 NA coding downstream 155241 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 161196 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 196615 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 231746 53663547 ~ 53670502 (-)
atxn1a LOC106588811 coding upstream 133469 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 365149 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 398829 54314224 ~ 54315645 (-)
LOC118941189 mrpl53 coding upstream 400729 54316124 ~ 54317624 (-)
tpd52 tpd52 coding upstream 610298 54525693 ~ 54552317 (-)
G1562856 NA non-coding downstream 3887 53896780 ~ 53898361 (-)
G1562857 NA non-coding downstream 5844 53895974 ~ 53896404 (-)
G1562854 NA non-coding downstream 18092 53883077 ~ 53884156 (-)
G1562853 NA non-coding downstream 19179 53881366 ~ 53883069 (-)
G1562852 NA non-coding downstream 21065 53880861 ~ 53881183 (-)
G1562868 LOC106588808 non-coding upstream 9265 53924660 ~ 53925478 (-)
G1562866 NA non-coding upstream 12326 53927721 ~ 53928165 (-)
G1562930 LOC106588809 non-coding upstream 90691 54006086 ~ 54008006 (-)
G1562891 NA non-coding upstream 128703 54044098 ~ 54047835 (-)
G1562828 NA other downstream 26656 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 149565 53752406 ~ 53752683 (-)
tomm7 NA other downstream 273826 53621900 ~ 53628443 (-)
G1562762 NA other downstream 299554 53598650 ~ 53602694 (-)
LOC110496860 LOC106588819 other upstream 723472 54636849 ~ 54652932 (-)
G1563253 NA other upstream 745231 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2566073 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2812957 56728341 ~ 56737381 (-)
G1566899 NA other upstream 4112116 58027511 ~ 58027790 (-)

Expression


Co-expression Network