LOC110496857 (LOC106588809)


Basic Information

Item Value
gene id LOC110496857
gene name LOC106588809
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53983637 ~ 54008038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953266.1
TGACGGTGATCGCGGGTGCAAGCCTCATATGCTAAACGCATTGTAATTGGCTGCTTCGGAGTAGTCAGTGCTTTGCATAGCAATTCATTGATATAGCTTACTGCTGGTAGGGAGTGTTTGGCTGCCACACGAAGTGAGAGGGTTTGGAAAGTGGACGAAGGTTTGATGTAGGGTCTCAAAAGAGGAATACCGTGGTTGTGTTATTATTTTAAAAGAGGTATAGACCAAATATAAAATACTAGACAGCCAAAATGCTTTGCCATGTTACCCGTCCGGATTCGGTGGTTATGGAAGTGGAAGTTGATTCGAAGGCGAATGGTGAAGACTGTCTGAATAAGGTGTGTAGGAAGTTGGGAATCATAGAGGTGGACTACTTTGGCCTGCAGTTCTCGGGCAGTAAGGGAGAGAACCTGTGGCTCAACCTGAGGAACAGAATCTGCCAGCAGATGGACAATCTGACTCCCTGCCGACTCAGGCTTAGAGTCAAGTTCTTTGTGGAACCACATCTCATACTCCAGGAACAGACTAGGCATGTGTTCTTCATGCATGTCAAGGAGGACCTCCACAGCGGCCACCTGAGGATGTGTTCAGAGCAGGCTGAGGTGCTGAGTGCCCTACTGGCCCAGGCCGAGTTCAGAGACTACAACCAGAACACTGCCAAATACTGCTACTCTGAGCTGTGTGGGAGCGAACCCTGCCCGGCAACAGTCGACAGTATCATCTCTAAGCACAAGGCGTTGGAGGGTCAGAGCCTGGGGTCGGTGGAGTACCAGGCCCTGCAGCTGGTGTCCAGTTTGGAGCACTACGGGGTGGAGTGGCACTGGGCCAGGGATGCAGAGGCACAGAGGCTGGCCATAGGGGTGGGCCCGGAGGGCATCACTGTCTGTAAAGAGGACTTCAGCCTGGTCAACAGGATCAGCTATCCCATAATCCAAATAGCCACCCAGTCAGGGAAGAGTGTTTACCTGACGGTGATCAAGGATACCAGCGATAGTGTGGTTCTACTATTCAAGCTAATCAGCAACCGGGCTGCCAGCGGACTGTACCGggccatcacagagacacatgcCTTCTACAGGTGTGACACGGTGACCAACGCAGTGATGATGCAGTACAGCCGTGATTTCAAGGGCCACCTGGCGTCTCTCTTCCTCAACGAGAACATAAACCTGGGAAAGAAGTACGTCTTCGACATCCGACGCACCTCCAAGGAGGTCTACGACTACGCACGCCGGGCACTCTACAACGCCGGCATCGTGGACCTGGTGGCACGTGCGGCGGGGACGGGCGGCGAGAGGACGCCTTTGGGGCACAGTCCCCTTCGTGGccagggggagggggtgggggaggatTGTGGCAGCTGCCAGCAGAGCAGGGCACTGCTGGAGAGACTAGAGAAGCTCAGGGAGGCTCTGCTGTGTATGCTGTGCTGTGAGGAGGAGATAGATGCAGCCTTCTGCCCCTGTGGACACATGGTATGCTGCCAGACATGCGCCAACCAACTACCGTTGTGTCCGGTGTGTCGATCTGAGGTGGAACACGTGCAGCATGTCTACCTGCCCACCTGCACCAGTCTCCTAAACCTCAGCAACACCTCCCACGACGACGACAGCAGCCCCGTCCACAGAGCTATCGGTGGGCTAGCATATACCTGCCACACCAAGGACCACTCCAACACCAACAACCACCACGACTCCAACAAGATCTACCAGACTGAGACATAAACCACTCCCCCACTtccagactgcatcccaaatagcaccctggcACCCTACATAGTGCTGTCCCCAATAATGCACTAAttagggaatatgatgccattcCAGACACAGTCCAGTCCCAACACCACGGTTTCTTTGTTTATCACCTTACCATCCTGACAGTGGTATTTTTCCACTGtcgatatttatttttttaaaccaatGATGGATTTGGGATTTTGAATTTCCATTTGAATTTTAGGATTATTGCCTATTATATTTTCTTAATTGAACTGCAGCTGTTGATTTGATCAGCAGTAGCGGTGTGATCGGATTTATTTCATTTGGATTgtgcttttgtttgtttttttgctccaTATCCGTGTACAGAATGTGAATGATCTATTGGGCTCATAGCCTGTAACGCTTGTACAATATGAGGGAATTCTGTGTTCTAGGAGAATAGTAGGCAACGTACATAATCGTTCAGTTGTTTTATAAGTATATTTGCATTTAAGTTTCTTCGTTTTAAGCTTTTAGAATCTCATTTTATGGTTCTAATGGAgtgaaatgcatttttttgttctGTTTCCATGCCAATGAGAAGTTATTTGGGGGTAGGAATCTGGCCCTGGTACAGCACTGCATTCTGATTTTAGAGAAGTActttcccaaaaggcaccctatttcctatgtacagtactgcaccacttttgaccagtggTGCACTTTGCAGGGAaggggtgcaatttgggatgcaaccaagGGGAAGTCTTGACGATAAGCCCGGTATTAATGTGTATATGAGTGCCAGGTTCTGGAACCAAACCAGAACTCTGACAGGGAAAGATAAATGGTTGAATCTCCTAGTCCATTCCCAATGGGTCTTTATAAAGTAACTCCACTCATACGGAACTCTATGAGCTCCAGACATTCAGCATTCTATCCCATAACAGAACCTTCACAGATGGAAGCCCCAAAATAAGATGCTCCCTGTATTCTTTTACTCAATAAGTGATCTGTGATTATTTATTAGTAAGGCTGTTTTTTTAACCTGATCCCAGATTGGCTTGTGTTGTATAACTAACCCAGGTTTTAGGAGCTAGCTATACAGCACAAGcagttctgggaccaggctactgttTTTCAGCCTCTACTGtgtagcggtgtgtgtgtgtgtgtgcgtcctcaACTTCTGTTCTATGTGGTCAACTAGGGAGTTCCTTATGATTTTATTATTAAAGGGTACTAGTCGATCTGTCAGTGCAATACGAGCTGctttttgagtttttttttttttttggggggggggggggggggggggtggaagaaTGAATACACTGTCACTTTACCAAGGAAACTTCACCAGTGTTTTATCCATAGGGTTTTGCCTTAATGTAGCAACACTGGCTTGCGtctcaagtggcaccctattccctatgcagtgcagtgcagtacttttgaccagagcccatagcacTCTGGTTGAAATTAGTGCACTGtttaggaatagggtgccatttgagacaacgACATTGTGTTTTGATATGCATTCTTTCTTTGAGGAATATGTTGTCTTTATTGCTGACACCATTTGGCACATAGTCACTGCAGGGGATTGATTATTTCATCTCTTTGTTCAAGTAGGATTTGTTTCTGTTTTCTGAAGCAAAAACTATGCTCTGCAAATGTAGAAAGAACTGTCTTTTATATTGTATTTCTTTGAACTAGAAAAGTattaataaagtttttttttttaaacaagca

Function

NR:

description
E3 ubiquitin-protein ligase MYLIP-A-like

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953266.1 True 3467 mRNA 0.47 7 53983637 54008038

Neighbor

gene id symbol gene type direction distance location
dync1li1 LOC106588808 coding upstream 55456 53916292 ~ 53928304 (+)
LOC110519664 LOC106588805 coding upstream 101145 53812083 ~ 53882492 (+)
LOC110514975 LOC106588804 coding upstream 253221 53713836 ~ 53730416 (+)
LOC110496530 LOC106588804 coding upstream 280327 53675493 ~ 53703310 (+)
klhl7 klhl7 coding upstream 320084 53656226 ~ 53663553 (+)
gmpr gmpr coding downstream 14244 54022282 ~ 54036714 (+)
LOC118940998 NA coding downstream 246855 54254893 ~ 54258383 (+)
LOC110496546 LOC106588814 coding downstream 314779 54322817 ~ 54409921 (+)
LOC110496545 LOC106588816 coding downstream 404732 54412770 ~ 54510923 (+)
LOC110496548 LOC106588817 coding downstream 546340 54554378 ~ 54576444 (+)
G1561891 NA non-coding upstream 68074 53915148 ~ 53915563 (+)
G1561864 NA non-coding upstream 70917 53912243 ~ 53912720 (+)
G1561843 mrpl3 non-coding upstream 88689 53887139 ~ 53894948 (+)
G1561853 NA non-coding upstream 115231 53855267 ~ 53868406 (+)
G1561943 LOC106588811 non-coding downstream 36034 54044072 ~ 54053417 (+)
G1561956 NA non-coding downstream 76830 54084868 ~ 54097923 (+)
G1561987 NA non-coding downstream 110433 54118471 ~ 54118930 (+)
G1561989 NA non-coding downstream 113693 54121731 ~ 54144598 (+)
G1561990 NA non-coding downstream 114313 54122351 ~ 54165287 (+)
G1561856 NA other upstream 106707 53872173 ~ 53876930 (+)
G1561845 NA other upstream 142766 53817164 ~ 53840871 (+)
G1561544 LOC106588750 other upstream 695172 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 804700 53175661 ~ 53178938 (+)
G1563547 NA other downstream 1130610 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1900212 55908085 ~ 55908934 (+)
LOC110496862 LOC106588838 other downstream 2020900 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other downstream 2042550 56050588 ~ 56051793 (+)

Expression


Co-expression Network